Wall clock time and date at job start Tue Mar 31 2020 05:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46955 * 2 1 4 4 H 1.08998 * 109.58597 * 297.82936 * 3 2 1 5 5 C 1.53201 * 109.58360 * 58.10789 * 3 2 1 6 6 C 1.53075 * 109.29189 * 174.28169 * 5 3 2 7 7 C 1.53048 * 109.65759 * 298.84749 * 6 5 3 8 8 C 1.53189 * 109.31353 * 61.30194 * 7 6 5 9 9 N 1.46924 * 109.58810 * 177.54071 * 3 2 1 10 10 C 1.34774 * 120.63103 * 6.62323 * 9 3 2 11 11 O 1.21283 * 119.99803 * 4.82151 * 10 9 3 12 12 C 1.50698 * 120.00102 * 184.81359 * 10 9 3 13 13 N 1.46897 * 109.47019 * 180.02562 * 12 10 9 14 14 C 1.46904 * 111.00341 * 293.95410 * 13 12 10 15 15 C 1.53004 * 109.47403 * 172.25333 * 14 13 12 16 16 C 1.46904 * 111.00006 * 170.00225 * 13 12 10 17 17 C 1.50695 * 109.46972 * 284.94673 * 16 13 12 18 18 H 1.07997 * 120.00310 * 4.93477 * 17 16 13 19 19 C 1.37879 * 119.99842 * 184.92563 * 17 16 13 20 20 N 1.31508 * 120.00154 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99880 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47030 * 90.00488 * 21 19 17 23 23 H 1.48497 * 109.47356 * 209.99975 * 21 19 17 24 24 H 1.48498 * 109.47339 * 330.00414 * 21 19 17 25 25 H 1.09004 * 109.46522 * 184.48588 * 1 2 3 26 26 H 1.08998 * 109.47328 * 304.48296 * 1 2 3 27 27 H 1.08994 * 109.46804 * 64.49313 * 1 2 3 28 28 H 1.08994 * 109.47528 * 239.99827 * 2 1 3 29 29 H 1.09006 * 109.46976 * 119.99616 * 2 1 3 30 30 H 1.08997 * 109.49414 * 294.36902 * 5 3 2 31 31 H 1.09001 * 109.50017 * 54.47288 * 5 3 2 32 32 H 1.09001 * 109.45310 * 178.75478 * 6 5 3 33 33 H 1.09005 * 109.33810 * 58.86283 * 6 5 3 34 34 H 1.09001 * 109.49236 * 301.34926 * 7 6 5 35 35 H 1.09004 * 109.51975 * 181.26947 * 7 6 5 36 36 H 1.08999 * 109.58401 * 185.58186 * 8 7 6 37 37 H 1.08995 * 109.58582 * 65.15137 * 8 7 6 38 38 H 1.08997 * 109.47102 * 300.00094 * 12 10 9 39 39 H 1.09000 * 109.46955 * 60.00535 * 12 10 9 40 40 H 1.08996 * 109.47119 * 292.25804 * 14 13 12 41 41 H 1.08997 * 109.46806 * 52.25693 * 14 13 12 42 42 H 1.09004 * 109.46526 * 65.96613 * 15 14 13 43 43 H 1.08994 * 109.46930 * 185.96856 * 15 14 13 44 44 H 1.09003 * 109.46916 * 305.97441 * 15 14 13 45 45 H 1.08996 * 109.47196 * 44.95203 * 16 13 12 46 46 H 1.09004 * 109.47133 * 164.95179 * 16 13 12 47 47 H 0.97002 * 120.00459 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7098 1.9468 -0.9081 5 6 1.4922 2.1808 1.2255 6 6 2.1180 3.5760 1.2970 7 6 3.6365 3.4522 1.4425 8 6 4.2056 2.7294 0.2176 9 7 3.5080 1.4460 0.0594 10 6 4.2016 0.2939 -0.0299 11 8 3.6208 -0.7482 -0.2481 12 6 5.6988 0.3005 0.1411 13 7 6.2139 -1.0679 -0.0006 14 6 5.7408 -1.9247 1.0949 15 6 6.1337 -3.3764 0.8132 16 6 7.6810 -1.0729 -0.0768 17 6 8.1148 -0.5946 -1.4384 18 1 7.3798 -0.2394 -2.1455 19 6 9.4502 -0.6101 -1.7813 20 7 10.3452 -1.0428 -0.9204 21 14 9.9881 -0.0164 -3.4688 22 1 10.2750 1.4396 -3.4131 23 1 11.2129 -0.7466 -3.8833 24 1 8.9041 -0.2701 -4.4516 25 1 -0.3632 -1.0246 0.0804 26 1 -0.3634 0.5818 0.8471 27 1 -0.3633 0.4425 -0.9275 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 0.4090 2.2694 1.1426 31 1 1.7443 1.6244 2.1283 32 1 1.7134 4.1118 2.1556 33 1 1.8842 4.1237 0.3840 34 1 3.8705 2.8830 2.3422 35 1 4.0776 4.4463 1.5158 36 1 5.2713 2.5507 0.3612 37 1 4.0520 3.3408 -0.6715 38 1 6.1486 0.9383 -0.6197 39 1 5.9498 0.6828 1.1306 40 1 6.1945 -1.6007 2.0315 41 1 4.6561 -1.8503 1.1717 42 1 7.2193 -3.4709 0.8413 43 1 5.6927 -4.0254 1.5696 44 1 5.7692 -3.6668 -0.1722 45 1 8.0868 -0.4103 0.6875 46 1 8.0498 -2.0855 0.0870 47 1 11.2846 -1.0541 -1.1617 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081017954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:22 Heat of formation + Delta-G solvation = -46.540426 kcal Electronic energy + Delta-G solvation = -23873.072609 eV Core-core repulsion = 20669.220350 eV Total energy + Delta-G solvation = -3203.852259 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.60482 -38.98487 -37.65140 -35.24197 -34.68439 -33.77176 -31.86410 -30.31637 -29.75797 -27.38601 -25.63628 -25.01565 -24.49102 -22.36417 -21.95918 -21.29703 -19.88787 -18.58445 -17.84341 -17.19750 -16.61466 -16.49584 -15.92885 -15.66558 -15.52148 -15.37256 -15.28943 -14.49214 -14.36114 -14.31428 -14.16959 -14.04911 -13.56654 -13.32272 -13.18409 -12.98618 -12.86596 -12.65429 -12.56895 -12.54685 -12.29456 -12.11279 -12.02098 -11.84582 -11.68209 -11.55820 -11.41816 -11.36702 -11.29799 -10.58237 -9.87869 -9.48078 -8.96646 -8.17811 -6.27642 1.41064 1.43391 1.54805 1.69614 1.98543 2.41858 3.12974 3.29306 3.59121 3.86418 3.89235 4.01288 4.12133 4.23797 4.26897 4.29333 4.31610 4.42652 4.48562 4.50003 4.58629 4.67103 4.69310 4.73567 4.86690 4.87675 4.92098 5.00303 5.04124 5.09604 5.14903 5.21778 5.24389 5.29399 5.29731 5.32974 5.35602 5.49549 5.50119 5.67374 5.82820 6.08478 6.26846 6.51437 6.61362 6.86570 7.33564 7.41581 8.92503 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018180 B = 0.004737 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.801131 B = 5909.657650 C = 6592.954290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C 0.145 3.855 4 H 0.076 0.924 5 C -0.125 4.125 6 C -0.116 4.116 7 C -0.131 4.131 8 C 0.097 3.903 9 N -0.612 5.612 10 C 0.517 3.483 11 O -0.544 6.544 12 C 0.049 3.951 13 N -0.533 5.533 14 C 0.052 3.948 15 C -0.134 4.134 16 C 0.206 3.794 17 C -0.521 4.521 18 H 0.056 0.944 19 C 0.007 3.993 20 N -0.932 5.932 21 Si 0.965 3.035 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.271 1.271 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.043 0.957 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.057 0.943 40 H 0.015 0.985 41 H 0.080 0.920 42 H 0.038 0.962 43 H 0.077 0.923 44 H 0.048 0.952 45 H -0.034 1.034 46 H 0.020 0.980 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.136 10.787 5.541 21.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C 0.043 3.957 4 H 0.094 0.906 5 C -0.163 4.163 6 C -0.153 4.153 7 C -0.169 4.169 8 C -0.025 4.025 9 N -0.347 5.347 10 C 0.306 3.694 11 O -0.422 6.422 12 C -0.083 4.083 13 N -0.258 5.258 14 C -0.075 4.075 15 C -0.192 4.192 16 C 0.080 3.920 17 C -0.559 4.559 18 H 0.074 0.926 19 C -0.192 4.192 20 N -0.573 5.573 21 Si 0.790 3.210 22 H -0.193 1.193 23 H -0.208 1.208 24 H -0.196 1.196 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.113 0.887 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.074 0.926 40 H 0.033 0.967 41 H 0.099 0.901 42 H 0.057 0.943 43 H 0.095 0.905 44 H 0.067 0.933 45 H -0.016 1.016 46 H 0.038 0.962 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.436 10.008 5.011 21.568 hybrid contribution 1.292 0.241 0.018 1.314 sum -17.144 10.249 5.029 20.598 Atomic orbital electron populations 1.21935 0.94713 1.01896 1.02421 1.21853 0.95450 0.94745 1.02513 1.21426 0.78074 0.97121 0.99119 0.90611 1.22025 1.01353 0.96331 0.96635 1.21530 0.94402 0.96150 1.03243 1.21906 0.96867 1.01289 0.96809 1.21987 0.97048 0.83627 0.99811 1.48256 1.07077 1.06598 1.72722 1.20691 0.89392 0.83535 0.75805 1.90654 1.70034 1.32960 1.48511 1.21883 0.92142 0.92763 1.01470 1.61798 1.11321 1.08280 1.44394 1.22131 1.00461 0.94133 0.90807 1.21671 1.00384 0.95416 1.01702 1.19502 0.81746 0.95594 0.95179 1.21405 0.92221 1.42083 1.00184 0.92596 1.25824 0.96573 0.95538 1.01229 1.70069 1.01936 1.48143 1.37110 0.85444 0.77569 0.78612 0.79360 1.19311 1.20791 1.19552 0.93035 0.91199 0.92137 0.92182 0.93817 0.88729 0.92832 0.90144 0.90778 0.92549 0.88642 0.90133 0.89861 0.88543 0.92572 0.96714 0.90138 0.94270 0.90457 0.93315 1.01622 0.96218 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.65 71.98 0.69 -2.23 16 2 C -0.11 -2.87 3.90 30.60 0.12 -2.75 16 3 C 0.14 3.29 3.04 44.98 0.14 3.42 16 4 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 5 C -0.13 -2.08 4.80 30.69 0.15 -1.93 16 6 C -0.12 -1.54 5.88 30.64 0.18 -1.36 16 7 C -0.13 -2.05 6.08 30.67 0.19 -1.86 16 8 C 0.10 2.04 6.35 86.36 0.55 2.59 16 9 N -0.61 -16.55 2.97 -795.03 -2.36 -18.91 16 10 C 0.52 18.48 7.19 87.66 0.63 19.11 16 11 O -0.54 -22.19 9.90 -3.04 -0.03 -22.22 16 12 C 0.05 1.91 3.63 85.56 0.31 2.23 16 13 N -0.53 -24.83 4.18 -905.37 -3.79 -28.62 16 14 C 0.05 2.16 5.32 86.30 0.46 2.62 16 15 C -0.13 -5.26 9.69 71.98 0.70 -4.56 16 16 C 0.21 11.15 4.62 85.55 0.40 11.54 16 17 C -0.52 -29.89 8.60 25.60 0.22 -29.67 16 18 H 0.06 3.21 7.61 -2.91 -0.02 3.18 16 19 C 0.01 0.37 5.46 84.66 0.46 0.83 16 20 N -0.93 -55.92 13.29 21.45 0.28 -55.64 16 21 Si 0.97 44.47 29.54 68.60 2.03 46.50 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 25 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.07 1.08 6.29 -2.39 -0.02 1.06 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 2.02 6.31 -2.39 -0.02 2.01 16 29 H 0.04 1.36 7.18 -2.38 -0.02 1.34 16 30 H 0.09 1.21 6.63 -2.39 -0.02 1.19 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.08 1.85 5.93 -2.39 -0.01 1.83 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.10 3.94 6.87 -2.39 -0.02 3.93 16 39 H 0.06 2.06 7.87 -2.39 -0.02 2.04 16 40 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.08 3.26 5.79 -2.39 -0.01 3.24 16 42 H 0.04 1.65 6.43 -2.39 -0.02 1.64 16 43 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 45 H -0.03 -1.93 8.01 -2.39 -0.02 -1.95 16 46 H 0.02 1.16 5.86 -2.38 -0.01 1.14 16 47 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -68.09 352.18 2.24 -65.86 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.92 Total: 15.06 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 5.19 Total: -2.02 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -5.87 Total: -103.17 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.03 Total: -22.22 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -68.09 2.24 -65.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081017954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.318 kcal (2) G-P(sol) polarization free energy of solvation -68.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds