Wall clock time and date at job start Tue Mar 31 2020 06:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46840 * 2 1 4 4 N 1.46494 * 109.47436 * 119.99949 * 2 1 3 5 5 C 1.34779 * 120.00067 * 119.99858 * 4 2 1 6 6 O 1.21288 * 119.99913 * 180.02562 * 5 4 2 7 7 C 1.50697 * 120.00165 * 0.02562 * 5 4 2 8 8 N 1.46893 * 109.47095 * 179.97438 * 7 5 4 9 9 C 1.46894 * 111.00304 * 293.95001 * 8 7 5 10 10 C 1.46904 * 110.99724 * 169.99705 * 8 7 5 11 11 C 1.50711 * 109.47184 * 189.99872 * 10 8 7 12 12 H 1.08004 * 119.99632 * 0.02562 * 11 10 8 13 13 C 1.37872 * 119.99776 * 180.02562 * 11 10 8 14 14 N 1.31520 * 119.99356 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 120.00347 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47162 * 89.99888 * 15 13 11 17 17 H 1.48507 * 109.46879 * 209.99773 * 15 13 11 18 18 H 1.48502 * 109.47001 * 329.99793 * 15 13 11 19 19 C 1.46500 * 120.00026 * 300.00391 * 4 2 1 20 20 C 1.54961 * 110.92632 * 126.53830 * 19 4 2 21 21 C 1.54270 * 104.16191 * 156.29508 * 20 19 4 22 22 C 1.53869 * 106.63967 * 336.44607 * 21 20 19 23 23 C 1.54268 * 106.60115 * 359.97438 * 22 21 20 24 24 H 1.09000 * 109.47141 * 299.99936 * 1 2 3 25 25 H 1.08998 * 109.47321 * 60.00120 * 1 2 3 26 26 H 1.09002 * 109.46841 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47141 * 240.00064 * 2 1 3 28 28 H 1.09001 * 109.46818 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47066 * 300.00037 * 3 2 1 30 30 H 1.09000 * 109.47202 * 60.00101 * 3 2 1 31 31 H 1.09005 * 109.47031 * 299.99954 * 7 5 4 32 32 H 1.09002 * 109.46850 * 59.99256 * 7 5 4 33 33 H 1.09002 * 109.47140 * 59.99855 * 9 8 7 34 34 H 1.09000 * 109.47436 * 179.97438 * 9 8 7 35 35 H 1.08997 * 109.47224 * 300.00436 * 9 8 7 36 36 H 1.08998 * 109.47184 * 310.00055 * 10 8 7 37 37 H 1.08999 * 109.47340 * 70.00479 * 10 8 7 38 38 H 0.96999 * 119.99390 * 180.02562 * 14 13 11 39 39 H 1.09001 * 110.67461 * 3.22943 * 19 4 2 40 40 H 1.08997 * 110.47708 * 37.64106 * 20 19 4 41 41 H 1.09002 * 110.53308 * 274.97498 * 20 19 4 42 42 H 1.09002 * 110.03399 * 217.13605 * 21 20 19 43 43 H 1.08995 * 110.02943 * 95.75505 * 21 20 19 44 44 H 1.08999 * 110.03405 * 119.26051 * 22 21 20 45 45 H 1.09001 * 110.03705 * 240.64196 * 22 21 20 46 46 H 1.08997 * 110.48788 * 142.28685 * 23 22 21 47 47 H 1.09001 * 110.48482 * 264.93365 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.7933 -1.7864 1.0724 6 8 3.1972 -2.3584 2.0627 7 6 3.1578 -2.3010 -0.2963 8 7 4.0027 -3.4950 -0.1614 9 6 5.2990 -3.1573 0.4415 10 6 4.1828 -4.1615 -1.4581 11 6 4.8401 -5.5012 -1.2473 12 1 5.0978 -5.8253 -0.2498 13 6 5.1124 -6.3131 -2.3279 14 7 5.6856 -7.4824 -2.1438 15 14 4.6674 -5.7523 -4.0532 16 1 5.8091 -5.0069 -4.6413 17 1 4.3630 -6.9368 -4.8956 18 1 3.4762 -4.8675 -3.9942 19 6 1.6645 -0.1901 2.5267 20 6 1.0332 -1.3115 3.3900 21 6 1.2843 -0.8563 4.8424 22 6 2.4931 0.0949 4.8034 23 6 2.9358 0.1847 3.3283 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.2495 -2.5577 -0.8416 32 1 3.7029 -1.5300 -0.8409 33 1 5.1389 -2.7289 1.4309 34 1 5.9045 -4.0593 0.5301 35 1 5.8152 -2.4332 -0.1887 36 1 3.2114 -4.3038 -1.9315 37 1 4.8126 -3.5448 -2.0993 38 1 5.8775 -8.0534 -2.9040 39 1 0.9906 0.6632 2.4502 40 1 1.5270 -2.2641 3.1980 41 1 -0.0362 -1.3888 3.1939 42 1 1.5078 -1.7186 5.4707 43 1 0.4089 -0.3322 5.2259 44 1 2.2043 1.0809 5.1672 45 1 3.3030 -0.3053 5.4133 46 1 3.2541 1.1987 3.0866 47 1 3.7373 -0.5261 3.1266 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083218938.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:49 Heat of formation + Delta-G solvation = -31.325944 kcal Electronic energy + Delta-G solvation = -23811.822273 eV Core-core repulsion = 20608.629763 eV Total energy + Delta-G solvation = -3203.192510 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.45206 -37.56698 -36.28275 -35.79768 -32.41775 -31.49807 -29.27782 -28.71602 -27.75452 -27.36804 -26.60211 -23.93313 -21.89971 -21.53983 -20.29066 -20.16464 -18.30463 -17.17105 -16.72096 -16.23174 -15.35645 -15.29051 -14.54642 -14.37223 -14.23262 -14.06007 -13.82160 -13.57571 -13.49716 -13.01844 -12.86239 -12.47902 -12.44665 -12.13655 -11.87799 -11.71493 -11.56322 -11.28227 -11.24195 -11.15716 -11.10397 -11.00205 -10.86854 -10.83734 -10.67908 -10.34461 -10.32816 -9.85170 -9.32922 -8.95208 -8.55967 -8.51259 -7.33818 -6.02296 -3.99496 2.93209 2.98175 3.28343 3.35830 3.36722 4.43002 4.48584 4.58016 4.59860 4.78680 4.86295 4.90285 4.92799 5.08078 5.25156 5.29741 5.34707 5.38080 5.45599 5.56316 5.57070 5.58801 5.63178 5.66188 5.69516 5.70318 5.84196 5.91960 5.92354 6.01364 6.03105 6.18580 6.25298 6.29272 6.36277 6.44804 6.78896 6.83116 6.87287 7.04205 7.49344 7.61943 7.92094 8.03764 8.54392 8.68548 9.08509 9.58689 11.10991 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022097 B = 0.004363 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.859616 B = 6416.355672 C = 7126.675690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.126 3.874 3 C -0.162 4.162 4 N -0.610 5.610 5 C 0.518 3.482 6 O -0.505 6.505 7 C 0.034 3.966 8 N -0.512 5.512 9 C 0.033 3.967 10 C 0.163 3.837 11 C -0.507 4.507 12 H 0.083 0.917 13 C 0.068 3.932 14 N -0.900 5.900 15 Si 0.875 3.125 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.268 1.268 19 C 0.148 3.852 20 C -0.143 4.143 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.136 4.136 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.004 0.996 36 H 0.028 0.972 37 H -0.016 1.016 38 H 0.263 0.737 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.822 20.877 6.979 24.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.022 3.978 3 C -0.220 4.220 4 N -0.345 5.345 5 C 0.306 3.694 6 O -0.379 6.379 7 C -0.098 4.098 8 N -0.236 5.236 9 C -0.115 4.115 10 C 0.037 3.963 11 C -0.545 4.545 12 H 0.101 0.899 13 C -0.134 4.134 14 N -0.539 5.539 15 Si 0.703 3.297 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.193 1.193 19 C 0.045 3.955 20 C -0.181 4.181 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.175 4.175 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.112 0.888 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.022 0.978 36 H 0.046 0.954 37 H 0.002 0.998 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.761 20.045 7.719 24.025 hybrid contribution 0.117 0.874 -1.684 1.901 sum -10.644 20.919 6.035 24.235 Atomic orbital electron populations 1.22180 0.94915 1.02762 1.02212 1.21196 0.94526 0.93583 0.88486 1.22174 1.01825 0.95727 1.02246 1.48116 1.51864 1.28671 1.05888 1.20796 0.77496 0.78965 0.92102 1.90603 1.51651 1.56309 1.39340 1.22056 0.99984 0.94323 0.93434 1.61689 1.14865 1.20569 1.26501 1.22393 0.90141 1.00655 0.98336 1.20240 0.96139 0.94853 0.85117 1.21027 1.38220 0.99298 0.95965 0.89948 1.24896 0.94917 0.94804 0.98740 1.69899 1.42893 1.10107 1.31003 0.86863 0.79250 0.78435 0.85162 1.20370 1.21132 1.19255 1.21904 0.95960 0.96185 0.81462 1.22829 0.99989 1.01242 0.94038 1.21995 0.97533 0.99091 0.96941 1.22000 0.98060 0.98979 0.96557 1.22727 0.98956 1.01255 0.94543 0.92340 0.91504 0.91919 0.88767 0.92164 0.91514 0.92311 0.88802 0.93331 0.91398 0.90223 0.97795 0.95450 0.99841 0.92679 0.89500 0.88406 0.92375 0.91757 0.92421 0.92361 0.91804 0.92354 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.18 37.16 0.34 -0.97 16 2 C 0.13 1.20 3.12 -67.93 -0.21 0.98 16 3 C -0.16 -1.27 9.19 37.16 0.34 -0.92 16 4 N -0.61 -7.46 2.43 -156.30 -0.38 -7.84 16 5 C 0.52 8.37 6.69 -10.99 -0.07 8.30 16 6 O -0.51 -9.69 10.38 5.55 0.06 -9.64 16 7 C 0.03 0.58 3.76 -4.98 -0.02 0.56 16 8 N -0.51 -11.32 4.49 -245.83 -1.10 -12.42 16 9 C 0.03 0.70 9.03 60.06 0.54 1.24 16 10 C 0.16 4.00 3.79 -4.97 -0.02 3.98 16 11 C -0.51 -14.72 9.01 -34.44 -0.31 -15.03 16 12 H 0.08 2.64 7.37 -52.48 -0.39 2.25 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 15 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 19 C 0.15 1.66 2.43 -65.89 -0.16 1.50 16 20 C -0.14 -1.74 6.18 -25.03 -0.15 -1.90 16 21 C -0.12 -1.23 6.80 -25.61 -0.17 -1.41 16 22 C -0.12 -1.21 6.80 -25.62 -0.17 -1.38 16 23 C -0.14 -1.58 6.22 -25.07 -0.16 -1.73 16 24 H 0.06 0.44 7.01 -51.93 -0.36 0.08 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.92 5.77 -51.93 -0.30 0.62 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.43 7.15 -51.93 -0.37 0.06 16 31 H 0.09 1.49 7.58 -51.93 -0.39 1.10 16 32 H 0.05 0.76 7.77 -51.93 -0.40 0.35 16 33 H 0.07 1.38 5.88 -51.93 -0.31 1.08 16 34 H 0.08 1.86 6.76 -51.93 -0.35 1.51 16 35 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 36 H 0.03 0.67 6.99 -51.93 -0.36 0.31 16 37 H -0.02 -0.39 7.55 -51.93 -0.39 -0.78 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.09 0.81 6.21 -51.93 -0.32 0.48 16 40 H 0.10 1.55 5.64 -51.93 -0.29 1.26 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.09 1.26 6.18 -51.93 -0.32 0.94 16 LS Contribution 352.86 15.07 5.32 5.32 Total: -1.00 -32.25 352.86 -8.71 -40.96 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -8.38 Total: -1.13 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -0.33 Total: -4.90 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -0.71 Total: -47.40 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.06 Total: -9.64 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.25 -8.71 -40.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218938.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.631 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds