Wall clock time and date at job start Tue Mar 31 2020 06:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46840 * 2 1 4 4 N 1.46494 * 109.47436 * 119.99949 * 2 1 3 5 5 C 1.34779 * 120.00067 * 119.99858 * 4 2 1 6 6 O 1.21288 * 119.99913 * 180.02562 * 5 4 2 7 7 C 1.50697 * 120.00165 * 0.02562 * 5 4 2 8 8 N 1.46893 * 109.47095 * 179.97438 * 7 5 4 9 9 C 1.46894 * 111.00304 * 293.95001 * 8 7 5 10 10 C 1.46904 * 110.99724 * 169.99705 * 8 7 5 11 11 C 1.50711 * 109.47184 * 189.99872 * 10 8 7 12 12 H 1.08004 * 119.99632 * 0.02562 * 11 10 8 13 13 C 1.37872 * 119.99776 * 180.02562 * 11 10 8 14 14 N 1.31520 * 119.99356 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 120.00347 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47162 * 89.99888 * 15 13 11 17 17 H 1.48507 * 109.46879 * 209.99773 * 15 13 11 18 18 H 1.48502 * 109.47001 * 329.99793 * 15 13 11 19 19 C 1.46500 * 120.00026 * 300.00391 * 4 2 1 20 20 C 1.54961 * 110.92632 * 126.53830 * 19 4 2 21 21 C 1.54270 * 104.16191 * 156.29508 * 20 19 4 22 22 C 1.53869 * 106.63967 * 336.44607 * 21 20 19 23 23 C 1.54268 * 106.60115 * 359.97438 * 22 21 20 24 24 H 1.09000 * 109.47141 * 299.99936 * 1 2 3 25 25 H 1.08998 * 109.47321 * 60.00120 * 1 2 3 26 26 H 1.09002 * 109.46841 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47141 * 240.00064 * 2 1 3 28 28 H 1.09001 * 109.46818 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47066 * 300.00037 * 3 2 1 30 30 H 1.09000 * 109.47202 * 60.00101 * 3 2 1 31 31 H 1.09005 * 109.47031 * 299.99954 * 7 5 4 32 32 H 1.09002 * 109.46850 * 59.99256 * 7 5 4 33 33 H 1.09002 * 109.47140 * 59.99855 * 9 8 7 34 34 H 1.09000 * 109.47436 * 179.97438 * 9 8 7 35 35 H 1.08997 * 109.47224 * 300.00436 * 9 8 7 36 36 H 1.08998 * 109.47184 * 310.00055 * 10 8 7 37 37 H 1.08999 * 109.47340 * 70.00479 * 10 8 7 38 38 H 0.96999 * 119.99390 * 180.02562 * 14 13 11 39 39 H 1.09001 * 110.67461 * 3.22943 * 19 4 2 40 40 H 1.08997 * 110.47708 * 37.64106 * 20 19 4 41 41 H 1.09002 * 110.53308 * 274.97498 * 20 19 4 42 42 H 1.09002 * 110.03399 * 217.13605 * 21 20 19 43 43 H 1.08995 * 110.02943 * 95.75505 * 21 20 19 44 44 H 1.08999 * 110.03405 * 119.26051 * 22 21 20 45 45 H 1.09001 * 110.03705 * 240.64196 * 22 21 20 46 46 H 1.08997 * 110.48788 * 142.28685 * 23 22 21 47 47 H 1.09001 * 110.48482 * 264.93365 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.7933 -1.7864 1.0724 6 8 3.1972 -2.3584 2.0627 7 6 3.1578 -2.3010 -0.2963 8 7 4.0027 -3.4950 -0.1614 9 6 5.2990 -3.1573 0.4415 10 6 4.1828 -4.1615 -1.4581 11 6 4.8401 -5.5012 -1.2473 12 1 5.0978 -5.8253 -0.2498 13 6 5.1124 -6.3131 -2.3279 14 7 5.6856 -7.4824 -2.1438 15 14 4.6674 -5.7523 -4.0532 16 1 5.8091 -5.0069 -4.6413 17 1 4.3630 -6.9368 -4.8956 18 1 3.4762 -4.8675 -3.9942 19 6 1.6645 -0.1901 2.5267 20 6 1.0332 -1.3115 3.3900 21 6 1.2843 -0.8563 4.8424 22 6 2.4931 0.0949 4.8034 23 6 2.9358 0.1847 3.3283 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.2495 -2.5577 -0.8416 32 1 3.7029 -1.5300 -0.8409 33 1 5.1389 -2.7289 1.4309 34 1 5.9045 -4.0593 0.5301 35 1 5.8152 -2.4332 -0.1887 36 1 3.2114 -4.3038 -1.9315 37 1 4.8126 -3.5448 -2.0993 38 1 5.8775 -8.0534 -2.9040 39 1 0.9906 0.6632 2.4502 40 1 1.5270 -2.2641 3.1980 41 1 -0.0362 -1.3888 3.1939 42 1 1.5078 -1.7186 5.4707 43 1 0.4089 -0.3322 5.2259 44 1 2.2043 1.0809 5.1672 45 1 3.3030 -0.3053 5.4133 46 1 3.2541 1.1987 3.0866 47 1 3.7373 -0.5261 3.1266 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083218938.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:49 Heat of formation + Delta-G solvation = -52.367675 kcal Electronic energy + Delta-G solvation = -23812.734711 eV Core-core repulsion = 20608.629763 eV Total energy + Delta-G solvation = -3204.104948 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.55205 -38.81911 -37.35061 -37.14821 -34.60150 -32.37601 -30.80143 -29.61808 -29.45413 -27.96794 -27.88471 -25.72683 -23.04221 -22.56934 -21.78903 -21.14943 -19.53439 -18.82935 -18.12298 -17.30648 -16.71127 -16.46831 -16.09015 -15.87254 -15.50734 -15.33117 -14.93480 -14.60906 -14.55165 -14.45513 -13.95275 -13.83751 -13.51702 -13.47650 -13.06659 -12.86655 -12.69882 -12.59063 -12.51207 -12.42315 -12.23610 -12.05946 -12.00670 -11.95096 -11.78322 -11.76321 -11.72871 -11.51058 -11.19547 -10.78744 -10.28276 -9.53245 -9.02213 -8.27146 -6.31979 1.35826 1.39028 1.49811 1.70817 1.96318 2.36114 3.05164 3.23060 3.57959 3.71589 3.81620 3.87337 4.07307 4.19919 4.27493 4.31628 4.37528 4.40041 4.50509 4.56379 4.57972 4.59114 4.68246 4.80750 4.81555 4.83902 4.88661 4.96285 4.99036 4.99696 5.05893 5.08529 5.17865 5.20799 5.26356 5.34060 5.37301 5.41098 5.51237 5.54291 5.86373 5.95164 6.25722 6.47185 6.66406 6.74318 7.30927 7.35967 8.90163 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022097 B = 0.004363 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.859616 B = 6416.355672 C = 7126.675690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 C -0.156 4.156 4 N -0.599 5.599 5 C 0.515 3.485 6 O -0.546 6.546 7 C 0.034 3.966 8 N -0.539 5.539 9 C 0.046 3.954 10 C 0.174 3.826 11 C -0.521 4.521 12 H 0.029 0.971 13 C 0.004 3.996 14 N -0.951 5.951 15 Si 0.955 3.045 16 H -0.266 1.266 17 H -0.282 1.282 18 H -0.241 1.241 19 C 0.150 3.850 20 C -0.144 4.144 21 C -0.115 4.115 22 C -0.115 4.115 23 C -0.135 4.135 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.047 0.953 27 H 0.092 0.908 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.020 0.980 36 H 0.038 0.962 37 H -0.005 1.005 38 H 0.267 0.733 39 H 0.119 0.881 40 H 0.055 0.945 41 H 0.069 0.931 42 H 0.050 0.950 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.052 0.948 46 H 0.075 0.925 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.079 24.634 5.350 28.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.014 3.986 3 C -0.214 4.214 4 N -0.332 5.332 5 C 0.303 3.697 6 O -0.423 6.423 7 C -0.097 4.097 8 N -0.263 5.263 9 C -0.102 4.102 10 C 0.047 3.953 11 C -0.559 4.559 12 H 0.047 0.953 13 C -0.192 4.192 14 N -0.592 5.592 15 Si 0.777 3.223 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.164 1.164 19 C 0.047 3.953 20 C -0.183 4.183 21 C -0.153 4.153 22 C -0.153 4.153 23 C -0.174 4.174 24 H 0.085 0.915 25 H 0.106 0.894 26 H 0.066 0.934 27 H 0.110 0.890 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.127 0.873 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.039 0.961 36 H 0.056 0.944 37 H 0.012 0.988 38 H 0.076 0.924 39 H 0.137 0.863 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.071 0.929 46 H 0.094 0.906 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.051 23.858 6.098 27.870 hybrid contribution 0.816 -0.306 -1.062 1.374 sum -12.235 23.553 5.035 27.014 Atomic orbital electron populations 1.22144 0.93395 1.02279 1.03724 1.21503 0.95717 0.94385 0.87003 1.22131 1.01087 0.94415 1.03732 1.48125 1.50256 1.27324 1.07530 1.20668 0.78048 0.79880 0.91101 1.90606 1.53551 1.57947 1.40225 1.22125 0.99754 0.92975 0.94803 1.61489 1.15588 1.23765 1.25450 1.22188 0.89852 0.99166 0.99007 1.19994 0.95974 0.92764 0.86519 1.21257 1.38900 1.01864 0.93920 0.95286 1.25945 0.94481 0.94582 1.04225 1.70079 1.44431 1.11852 1.32824 0.85615 0.80173 0.78497 0.78028 1.19077 1.20750 1.16424 1.22063 0.96148 0.96517 0.80574 1.22765 1.00173 0.99730 0.95606 1.22000 0.98730 0.98960 0.95650 1.22010 0.97552 1.00208 0.95576 1.22675 0.98040 1.01052 0.95621 0.91459 0.89383 0.93403 0.88959 0.93290 0.89445 0.91430 0.87325 0.90965 0.91002 0.93809 0.96120 0.94439 0.98757 0.92396 0.86288 0.92647 0.91259 0.93141 0.89861 0.89664 0.92903 0.90607 0.93395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.18 71.98 0.66 -1.30 16 2 C 0.12 1.84 3.12 44.99 0.14 1.98 16 3 C -0.16 -1.83 9.19 71.98 0.66 -1.17 16 4 N -0.60 -13.62 2.43 -766.79 -1.87 -15.48 16 5 C 0.51 16.51 6.69 87.66 0.59 17.10 16 6 O -0.55 -21.81 10.38 -3.05 -0.03 -21.85 16 7 C 0.03 1.14 3.76 85.56 0.32 1.46 16 8 N -0.54 -24.07 4.49 -931.66 -4.18 -28.26 16 9 C 0.05 2.02 9.03 127.69 1.15 3.17 16 10 C 0.17 8.49 3.79 85.56 0.32 8.82 16 11 C -0.52 -31.39 9.01 25.60 0.23 -31.16 16 12 H 0.03 1.99 7.37 -2.91 -0.02 1.97 16 13 C 0.00 0.27 5.47 84.65 0.46 0.73 16 14 N -0.95 -61.03 13.96 21.45 0.30 -60.73 16 15 Si 0.95 43.77 27.47 68.60 1.88 45.66 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.24 -9.95 6.54 99.48 0.65 -9.30 16 19 C 0.15 3.03 2.43 46.31 0.11 3.15 16 20 C -0.14 -3.42 6.18 31.70 0.20 -3.22 16 21 C -0.12 -2.28 6.80 31.32 0.21 -2.07 16 22 C -0.12 -2.19 6.80 31.32 0.21 -1.97 16 23 C -0.14 -2.96 6.22 31.67 0.20 -2.77 16 24 H 0.07 0.73 7.01 -2.39 -0.02 0.71 16 25 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.09 1.50 5.77 -2.39 -0.01 1.49 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.69 7.15 -2.39 -0.02 0.67 16 31 H 0.11 3.23 7.58 -2.38 -0.02 3.21 16 32 H 0.07 2.06 7.77 -2.39 -0.02 2.04 16 33 H 0.07 3.08 5.88 -2.39 -0.01 3.06 16 34 H 0.04 2.18 6.76 -2.39 -0.02 2.17 16 35 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.04 1.75 6.99 -2.39 -0.02 1.74 16 37 H -0.01 -0.24 7.55 -2.39 -0.02 -0.26 16 38 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 39 H 0.12 1.70 6.21 -2.39 -0.01 1.69 16 40 H 0.05 1.83 5.64 -2.39 -0.01 1.82 16 41 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.05 1.44 6.18 -2.39 -0.01 1.42 16 Total: -1.00 -74.79 352.86 2.44 -72.35 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.87 Total: 15.56 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 5.47 Total: -7.25 kcal Atomic # 7 Polarization: -98.72 SS G_CDS: -5.75 Total: -104.47 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.03 Total: -21.85 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.88 Total: 45.66 kcal Total: -74.79 2.44 -72.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218938.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.984 kcal (2) G-P(sol) polarization free energy of solvation -74.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds