Wall clock time and date at job start Tue Mar 31 2020 05:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46930 * 2 1 4 4 C 1.50700 * 109.47202 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99979 * 0.02562 * 4 3 2 6 6 N 1.34771 * 120.00226 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00264 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47240 * 179.97438 * 7 6 4 9 9 H 1.08998 * 109.53641 * 54.90418 * 8 7 6 10 10 C 1.53120 * 109.50532 * 294.79849 * 8 7 6 11 11 C 1.53119 * 109.16044 * 182.40281 * 10 8 7 12 12 C 1.53040 * 109.27555 * 57.66098 * 11 10 8 13 13 N 1.46852 * 109.52221 * 300.81307 * 12 11 10 14 14 C 1.46893 * 110.99775 * 185.84042 * 13 12 11 15 15 C 1.53004 * 109.47285 * 45.79812 * 14 13 12 16 16 C 1.50701 * 109.47211 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27574 * 16 15 14 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 15 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 15 21 21 H 1.48494 * 109.47230 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47301 * 119.99669 * 20 18 16 23 23 H 1.48498 * 109.47430 * 239.99516 * 20 18 16 24 24 C 1.46848 * 111.19468 * 61.74855 * 13 12 11 25 25 H 1.09001 * 109.46919 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47437 * 299.99842 * 1 2 3 27 27 H 1.08997 * 109.47322 * 60.00357 * 1 2 3 28 28 H 1.08994 * 109.47512 * 240.00008 * 2 1 3 29 29 H 1.09005 * 109.47449 * 119.99953 * 2 1 3 30 30 H 1.09003 * 109.47368 * 60.00159 * 3 2 1 31 31 H 1.08996 * 109.47273 * 299.99652 * 3 2 1 32 32 H 0.97000 * 120.00212 * 359.97438 * 6 4 3 33 33 H 1.09003 * 109.47412 * 59.99727 * 7 6 4 34 34 H 1.09005 * 109.47165 * 299.99712 * 7 6 4 35 35 H 1.08995 * 109.52028 * 302.31143 * 10 8 7 36 36 H 1.08998 * 109.52025 * 62.43704 * 10 8 7 37 37 H 1.09006 * 109.50162 * 177.59386 * 11 10 8 38 38 H 1.08993 * 109.50453 * 297.71355 * 11 10 8 39 39 H 1.09002 * 109.45973 * 180.80503 * 12 11 10 40 40 H 1.08993 * 109.46489 * 60.83550 * 12 11 10 41 41 H 1.09000 * 109.47823 * 285.79173 * 14 13 12 42 42 H 1.09007 * 109.47029 * 165.78941 * 14 13 12 43 43 H 1.09000 * 109.47211 * 59.98987 * 15 14 13 44 44 H 1.09007 * 109.46376 * 299.99529 * 15 14 13 45 45 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 46 46 H 1.08996 * 109.46421 * 58.27264 * 24 13 12 47 47 H 1.08999 * 109.46149 * 178.25589 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 8 4.1534 0.3923 0.0006 6 7 4.2208 2.6097 0.0013 7 6 5.6858 2.6098 0.0013 8 6 6.1957 4.0523 0.0014 9 1 5.7604 4.5928 0.8419 10 6 5.7954 4.7362 -1.3088 11 6 6.3607 6.1591 -1.3261 12 6 7.8812 6.1007 -1.1618 13 7 8.2127 5.4386 0.1064 14 6 9.6581 5.4875 0.3636 15 6 10.1773 6.9006 0.0900 16 6 11.6600 6.9509 0.3545 17 1 12.1800 6.0639 0.6852 18 6 12.3516 8.1309 0.1804 19 7 11.7184 9.2111 -0.2219 20 14 14.1881 8.1953 0.5158 21 1 14.6584 6.8568 0.9545 22 1 14.9042 8.5902 -0.7238 23 1 14.4617 9.1902 1.5838 24 6 7.7210 4.0550 0.1273 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7358 3.4498 0.0009 33 1 6.0492 2.0964 -0.8889 34 1 6.0491 2.0956 0.8911 35 1 6.1983 4.1738 -2.1510 36 1 4.7086 4.7741 -1.3825 37 1 6.1153 6.6367 -2.2747 38 1 5.9279 6.7327 -0.5066 39 1 8.2853 7.1130 -1.1594 40 1 8.3145 5.5388 -1.9891 41 1 10.1678 4.7801 -0.2905 42 1 9.8511 5.2247 1.4037 43 1 9.6675 7.6080 0.7441 44 1 9.9842 7.1634 -0.9501 45 1 12.2049 10.0413 -0.3440 46 1 8.1552 3.5026 -0.7060 47 1 8.0086 3.5816 1.0661 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101914502.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:29 Heat of formation + Delta-G solvation = -69.582910 kcal Electronic energy + Delta-G solvation = -22084.823343 eV Core-core repulsion = 18879.971887 eV Total energy + Delta-G solvation = -3204.851457 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.06618 -38.85764 -35.75796 -34.63063 -33.75920 -32.43603 -31.30305 -29.32795 -28.36404 -25.69232 -25.08258 -22.89984 -22.40807 -21.86300 -20.54516 -19.83692 -19.35908 -17.25037 -16.57769 -16.23944 -16.09259 -15.27958 -14.86817 -14.62135 -14.41602 -14.32141 -13.98118 -13.85844 -13.49931 -13.42559 -12.75932 -12.66042 -12.49237 -12.18906 -12.11368 -12.04978 -11.74169 -11.51615 -11.11222 -11.08354 -11.00620 -10.95602 -10.67432 -10.56096 -10.33965 -10.15709 -10.00279 -9.89365 -9.31610 -9.22627 -9.07194 -8.36255 -7.71438 -6.02402 -4.04496 2.46438 2.98832 3.29936 3.37521 3.41729 4.31928 4.45126 4.48604 4.55386 4.65173 4.75002 4.83349 4.93924 5.08841 5.13517 5.26053 5.31454 5.34387 5.38162 5.43336 5.52910 5.58084 5.65599 5.69600 5.77973 5.80804 5.91269 5.94725 5.97475 6.04645 6.08825 6.18840 6.28610 6.33281 6.41393 6.55489 6.60689 6.91531 7.29723 7.49293 7.60317 7.77304 7.83857 8.02584 8.04247 8.41125 9.02349 9.59451 11.09008 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.050716 B = 0.002397 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.957161 B =11680.765767 C =12072.206496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.508 3.492 5 O -0.544 6.544 6 N -0.728 5.728 7 C 0.124 3.876 8 C -0.095 4.095 9 H 0.085 0.915 10 C -0.113 4.113 11 C -0.116 4.116 12 C 0.049 3.951 13 N -0.538 5.538 14 C 0.062 3.938 15 C 0.021 3.979 16 C -0.521 4.521 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.064 3.936 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.401 0.599 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.026 0.974 41 H 0.020 0.980 42 H 0.063 0.937 43 H 0.025 0.975 44 H 0.020 0.980 45 H 0.260 0.740 46 H 0.030 0.970 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.597 -12.353 -1.291 24.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.181 4.181 4 C 0.295 3.705 5 O -0.421 6.421 6 N -0.380 5.380 7 C 0.000 4.000 8 C -0.114 4.114 9 H 0.103 0.897 10 C -0.151 4.151 11 C -0.154 4.154 12 C -0.079 4.079 13 N -0.263 5.263 14 C -0.064 4.064 15 C -0.016 4.016 16 C -0.560 4.560 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.065 4.065 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.235 0.765 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.113 0.887 40 H 0.044 0.956 41 H 0.038 0.962 42 H 0.081 0.919 43 H 0.043 0.957 44 H 0.039 0.961 45 H 0.070 0.930 46 H 0.048 0.952 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.337 -12.677 -0.955 24.838 hybrid contribution 1.293 0.179 -0.493 1.395 sum -20.045 -12.498 -1.448 23.666 Atomic orbital electron populations 1.21797 0.95490 1.01974 1.01780 1.21278 0.95223 0.94712 1.03582 1.21727 0.91800 1.00230 1.04373 1.20782 0.90353 0.83595 0.75782 1.90709 1.70611 1.31375 1.49371 1.46077 1.07690 1.08682 1.75591 1.21392 0.79156 0.97119 1.02350 1.21426 0.96808 0.93967 0.99240 0.89684 1.21638 0.99739 0.96845 0.96859 1.21608 0.96212 0.95983 1.01619 1.22212 0.94570 1.01240 0.89896 1.62017 1.16912 1.14233 1.33112 1.22318 0.83542 1.00907 0.99646 1.19251 0.95344 0.89791 0.97259 1.21228 0.93552 0.95879 1.45320 0.92683 1.24993 0.98392 0.95703 0.95263 1.69969 1.35840 1.00599 1.46904 0.86532 0.85499 0.78062 0.77882 1.19757 1.21042 1.20973 1.21943 0.92934 0.90911 1.00758 0.92416 0.92664 0.92689 0.91271 0.91245 0.88920 0.88952 0.76489 0.91557 0.91351 0.92266 0.92452 0.91875 0.91228 0.88745 0.95621 0.96211 0.91904 0.95680 0.96138 0.93038 0.95218 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.46 16 2 C -0.11 -0.81 5.22 -26.73 -0.14 -0.95 16 3 C -0.14 -0.94 5.70 -27.88 -0.16 -1.09 16 4 C 0.51 5.25 7.83 -10.99 -0.09 5.16 16 5 O -0.54 -7.96 15.98 5.56 0.09 -7.87 16 6 N -0.73 -6.52 5.31 -60.29 -0.32 -6.84 16 7 C 0.12 1.33 5.07 -4.04 -0.02 1.31 16 8 C -0.10 -1.07 2.39 -90.53 -0.22 -1.29 16 9 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 10 C -0.11 -1.22 5.13 -26.61 -0.14 -1.36 16 11 C -0.12 -1.50 6.09 -26.65 -0.16 -1.66 16 12 C 0.05 0.82 4.85 -3.83 -0.02 0.80 16 13 N -0.54 -9.54 4.81 -234.66 -1.13 -10.67 16 14 C 0.06 1.32 5.21 -3.83 -0.02 1.30 16 15 C 0.02 0.53 4.22 -27.88 -0.12 0.41 16 16 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 17 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 20 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.06 0.91 4.71 -3.83 -0.02 0.90 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 29 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.40 2.58 7.68 -40.82 -0.31 2.27 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.49 7.26 -51.93 -0.38 0.12 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.09 1.85 5.81 -51.93 -0.30 1.54 16 40 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.02 0.42 8.08 -51.93 -0.42 0.00 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.02 0.55 6.21 -51.93 -0.32 0.22 16 45 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 LS Contribution 368.69 15.07 5.56 5.56 Total: -1.00 -32.01 368.69 -10.10 -42.11 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -8.88 Total: -2.60 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -1.14 Total: -10.40 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: -0.71 Total: -43.40 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.09 Total: -7.87 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.01 -10.10 -42.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101914502.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.469 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds