Wall clock time and date at job start Tue Mar 31 2020 05:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47485 * 2 1 4 4 C 1.50703 * 109.47075 * 179.97438 * 3 2 1 5 5 O 1.21276 * 120.00033 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99649 * 180.02562 * 4 3 2 7 7 C 1.46498 * 119.99968 * 180.02562 * 6 4 3 8 8 C 1.52992 * 109.47306 * 179.97438 * 7 6 4 9 9 H 1.08994 * 109.54029 * 305.10095 * 8 7 6 10 10 C 1.53126 * 109.49999 * 65.19720 * 8 7 6 11 11 C 1.53099 * 109.15071 * 177.59266 * 10 8 7 12 12 C 1.53034 * 109.29509 * 302.33888 * 11 10 8 13 13 N 1.46847 * 109.51345 * 59.18740 * 12 11 10 14 14 C 1.46898 * 110.99897 * 174.16738 * 13 12 11 15 15 C 1.52999 * 109.47046 * 66.04707 * 14 13 12 16 16 C 1.50710 * 109.47200 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99699 * 359.97438 * 16 15 14 18 18 C 1.37868 * 119.99983 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00299 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99889 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47010 * 59.99781 * 20 18 16 22 22 H 1.48497 * 109.47234 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47344 * 300.00129 * 20 18 16 24 24 C 1.46854 * 111.19790 * 298.26320 * 13 12 11 25 25 H 1.09002 * 109.46914 * 300.00056 * 1 2 3 26 26 H 1.09002 * 109.46841 * 59.99755 * 1 2 3 27 27 H 1.09000 * 109.47381 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46914 * 239.99944 * 2 1 3 29 29 H 1.09002 * 109.46841 * 120.00245 * 2 1 3 30 30 H 1.08998 * 109.46652 * 59.99860 * 3 2 1 31 31 H 1.09002 * 109.46757 * 300.00010 * 3 2 1 32 32 H 0.97000 * 120.00068 * 359.97438 * 6 4 3 33 33 H 1.09002 * 109.46955 * 59.99748 * 7 6 4 34 34 H 1.09002 * 109.46890 * 299.99994 * 7 6 4 35 35 H 1.08990 * 109.52264 * 297.49930 * 10 8 7 36 36 H 1.09001 * 109.52183 * 57.69215 * 10 8 7 37 37 H 1.09007 * 109.48839 * 182.39531 * 11 10 8 38 38 H 1.09009 * 109.50682 * 62.29317 * 11 10 8 39 39 H 1.09002 * 109.46271 * 299.17460 * 12 11 10 40 40 H 1.08994 * 109.46242 * 179.19760 * 12 11 10 41 41 H 1.09002 * 109.47176 * 186.04194 * 14 13 12 42 42 H 1.08995 * 109.47485 * 306.04221 * 14 13 12 43 43 H 1.09006 * 109.47189 * 299.99807 * 15 14 13 44 44 H 1.08999 * 109.47919 * 59.99934 * 15 14 13 45 45 H 0.97001 * 119.99911 * 180.02562 * 19 18 16 46 46 H 1.08993 * 109.46229 * 181.76227 * 24 13 12 47 47 H 1.09008 * 109.45803 * 301.73838 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1534 0.3921 0.0006 6 7 4.2210 2.6096 0.0013 7 6 5.6860 2.6096 0.0013 8 6 6.1960 4.0520 0.0014 9 1 5.7608 4.5926 -0.8389 10 6 5.7955 4.7356 1.3118 11 6 6.3610 6.1582 1.3293 12 6 7.8815 6.1001 1.1653 13 7 8.2130 5.4382 -0.1029 14 6 9.6585 5.4871 -0.3601 15 6 10.3919 4.6502 0.6900 16 6 11.8750 4.7009 0.4266 17 1 12.2561 5.2725 -0.4067 18 6 12.7450 4.0176 1.2493 19 7 12.2808 3.3219 2.2643 20 14 14.5831 4.0798 0.9224 21 1 15.0513 5.4872 0.9948 22 1 15.2951 3.2687 1.9423 23 1 14.8642 3.5337 -0.4296 24 6 7.7213 4.0546 -0.1242 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.7360 3.4496 0.0009 33 1 6.0493 2.0961 -0.8889 34 1 6.0493 2.0952 0.8911 35 1 4.7088 4.7746 1.3849 36 1 6.1983 4.1731 2.1540 37 1 6.1153 6.6356 2.2780 38 1 5.9283 6.7321 0.5097 39 1 8.3147 5.5379 1.9925 40 1 8.2855 7.1124 1.1631 41 1 9.8648 5.0866 -1.3526 42 1 10.0024 6.5200 -0.3064 43 1 10.1857 5.0506 1.6826 44 1 10.0482 3.6172 0.6364 45 1 12.8930 2.8415 2.8434 46 1 8.0092 3.5813 -1.0629 47 1 8.1552 3.5021 0.7092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101914504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:32 Heat of formation + Delta-G solvation = -72.071732 kcal Electronic energy + Delta-G solvation = -22390.720231 eV Core-core repulsion = 19185.760851 eV Total energy + Delta-G solvation = -3204.959380 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.96830 -38.84603 -35.68182 -34.55541 -33.73121 -32.39101 -31.24120 -28.97171 -28.37251 -25.55949 -25.13166 -23.04041 -22.21661 -21.68243 -20.57503 -20.33506 -18.92312 -17.20310 -16.39817 -16.14178 -16.01170 -15.21852 -14.81691 -14.55702 -14.49088 -14.19192 -13.84934 -13.75482 -13.39494 -13.34871 -12.85122 -12.53518 -12.30265 -12.17261 -12.03643 -11.81679 -11.64989 -11.44861 -11.23281 -11.01501 -10.94731 -10.89309 -10.81649 -10.54650 -10.21712 -10.11522 -9.88810 -9.83889 -9.70691 -9.15837 -9.10647 -8.36342 -7.51820 -6.02584 -4.05726 2.57157 3.09304 3.31840 3.36413 3.38723 4.40396 4.49490 4.53843 4.62543 4.72111 4.85017 4.90639 5.04407 5.15461 5.19541 5.31974 5.32751 5.37402 5.44049 5.52491 5.63380 5.67221 5.75028 5.79590 5.87620 5.92812 5.97708 6.04659 6.06490 6.12348 6.16231 6.31704 6.35749 6.39269 6.43795 6.55452 6.68998 6.90058 7.40217 7.51863 7.53097 7.67867 7.84050 7.98077 8.15366 8.40303 9.01127 9.58616 11.08419 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023797 B = 0.002924 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.332878 B = 9574.274810 C =10351.733085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.507 3.493 5 O -0.541 6.541 6 N -0.728 5.728 7 C 0.122 3.878 8 C -0.094 4.094 9 H 0.080 0.920 10 C -0.114 4.114 11 C -0.114 4.114 12 C 0.051 3.949 13 N -0.541 5.541 14 C 0.057 3.943 15 C -0.009 4.009 16 C -0.521 4.521 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.062 3.938 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.399 0.601 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.042 0.958 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.016 0.984 44 H 0.019 0.981 45 H 0.261 0.739 46 H 0.072 0.928 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.817 0.955 -3.385 23.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.181 4.181 4 C 0.293 3.707 5 O -0.418 6.418 6 N -0.380 5.380 7 C -0.001 4.001 8 C -0.113 4.113 9 H 0.099 0.901 10 C -0.152 4.152 11 C -0.152 4.152 12 C -0.077 4.077 13 N -0.264 5.264 14 C -0.070 4.070 15 C -0.047 4.047 16 C -0.559 4.559 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.067 4.067 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.233 0.767 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.034 0.966 44 H 0.037 0.963 45 H 0.071 0.929 46 H 0.090 0.910 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -22.538 0.345 -3.618 22.830 hybrid contribution 1.369 0.003 0.612 1.499 sum -21.170 0.348 -3.007 21.385 Atomic orbital electron populations 1.21796 0.95552 1.01946 1.01709 1.21283 0.95152 0.94762 1.03651 1.21721 0.91909 1.00185 1.04250 1.20770 0.90296 0.83665 0.75941 1.90722 1.70572 1.31340 1.49169 1.46079 1.07764 1.08555 1.75645 1.21406 0.78881 0.97166 1.02687 1.21423 0.97180 0.93952 0.98754 0.90119 1.21628 0.99561 0.96614 0.97364 1.21573 0.96073 0.96332 1.01217 1.22045 0.94666 0.99291 0.91721 1.62296 1.16422 1.15346 1.32333 1.22320 0.83949 1.00629 1.00073 1.19666 0.95394 0.95408 0.94263 1.21120 0.91680 1.30357 1.12782 0.92654 1.25026 0.98949 0.95304 0.95120 1.69952 1.34943 1.31902 1.16611 0.86648 0.85282 0.78051 0.77967 1.20233 1.21308 1.20187 1.21934 0.92085 0.90787 1.01902 0.92710 0.92726 0.92428 0.91231 0.91214 0.89020 0.89017 0.76671 0.91281 0.91254 0.92540 0.91891 0.92025 0.91619 0.93981 0.91284 0.91948 0.92001 0.96563 0.96316 0.92932 0.90979 0.93399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.11 -0.91 5.22 -26.73 -0.14 -1.05 16 3 C -0.14 -1.05 5.70 -27.88 -0.16 -1.21 16 4 C 0.51 5.83 7.83 -10.98 -0.09 5.74 16 5 O -0.54 -8.74 15.98 5.56 0.09 -8.65 16 6 N -0.73 -7.34 5.31 -60.30 -0.32 -7.66 16 7 C 0.12 1.53 5.07 -4.05 -0.02 1.51 16 8 C -0.09 -1.16 2.39 -90.54 -0.22 -1.38 16 9 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 10 C -0.11 -1.33 5.13 -26.62 -0.14 -1.46 16 11 C -0.11 -1.41 6.09 -26.66 -0.16 -1.57 16 12 C 0.05 0.83 5.05 -3.84 -0.02 0.81 16 13 N -0.54 -9.45 4.86 -234.67 -1.14 -10.59 16 14 C 0.06 1.18 5.30 -3.83 -0.02 1.16 16 15 C -0.01 -0.23 4.27 -27.88 -0.12 -0.35 16 16 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 20 Si 0.89 21.77 29.54 -169.99 -5.02 16.74 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.06 1.01 4.12 -3.83 -0.02 1.00 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 29 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.40 2.87 7.68 -40.82 -0.31 2.56 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.52 7.27 -51.93 -0.38 0.14 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 39 H 0.04 0.78 6.75 -51.93 -0.35 0.43 16 40 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 41 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 42 H 0.06 1.27 8.06 -51.93 -0.42 0.85 16 43 H 0.02 0.44 6.68 -51.93 -0.35 0.09 16 44 H 0.02 0.51 6.51 -51.93 -0.34 0.17 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 47 H 0.05 0.91 6.61 -51.92 -0.34 0.57 16 LS Contribution 366.64 15.07 5.53 5.53 Total: -1.00 -32.34 366.64 -10.05 -42.39 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -8.78 Total: -0.67 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -1.14 Total: -10.80 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: -0.72 Total: -44.54 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.34 -10.05 -42.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101914504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.678 kcal (2) G-P(sol) polarization free energy of solvation -32.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds