Wall clock time and date at job start Tue Mar 31 2020 06:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47055 * 2 1 4 4 N 1.46496 * 109.47330 * 180.02562 * 3 2 1 5 5 C 1.34772 * 120.00015 * 180.02562 * 4 3 2 6 6 O 1.21281 * 120.00097 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.00161 * 180.02562 * 5 4 3 8 8 H 1.09006 * 109.53502 * 59.90377 * 7 5 4 9 9 C 1.53123 * 109.50254 * 299.80689 * 7 5 4 10 10 C 1.53124 * 109.15980 * 182.40170 * 9 7 5 11 11 C 1.53041 * 109.27510 * 57.65355 * 10 9 7 12 12 N 1.46842 * 109.52407 * 300.81747 * 11 10 9 13 13 C 1.46903 * 111.00077 * 185.84059 * 12 11 10 14 14 C 1.53006 * 109.46708 * 45.79369 * 13 12 11 15 15 C 1.52995 * 109.46836 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.47119 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99990 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00049 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99968 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00112 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47096 * 89.99868 * 20 18 16 22 22 H 1.48501 * 109.47148 * 209.99695 * 20 18 16 23 23 H 1.48499 * 109.47232 * 329.99868 * 20 18 16 24 24 C 1.46846 * 111.19700 * 61.74724 * 12 11 10 25 25 H 1.08999 * 109.47332 * 59.99765 * 1 2 3 26 26 H 1.09002 * 109.47079 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47049 * 299.99617 * 1 2 3 28 28 H 1.09003 * 109.47348 * 240.00383 * 2 1 3 29 29 H 1.08996 * 109.47581 * 119.99783 * 2 1 3 30 30 H 1.09003 * 109.46730 * 60.00004 * 3 2 1 31 31 H 1.08999 * 109.47242 * 300.00289 * 3 2 1 32 32 H 0.97004 * 120.00402 * 0.02562 * 4 3 2 33 33 H 1.09000 * 109.52181 * 302.30649 * 9 7 5 34 34 H 1.08997 * 109.52376 * 62.49755 * 9 7 5 35 35 H 1.08997 * 109.50272 * 297.71554 * 10 9 7 36 36 H 1.08999 * 109.50255 * 177.59425 * 10 9 7 37 37 H 1.09006 * 109.45562 * 180.80294 * 11 10 9 38 38 H 1.08991 * 109.45245 * 60.83364 * 11 10 9 39 39 H 1.08996 * 109.47016 * 165.79073 * 13 12 11 40 40 H 1.08996 * 109.47351 * 285.79334 * 13 12 11 41 41 H 1.08999 * 109.46912 * 300.00107 * 14 13 12 42 42 H 1.08996 * 109.47244 * 59.99898 * 14 13 12 43 43 H 1.08999 * 109.47333 * 299.99696 * 15 14 13 44 44 H 1.08996 * 109.47412 * 59.99849 * 15 14 13 45 45 H 0.97004 * 120.00015 * 180.02562 * 19 18 16 46 46 H 1.08999 * 109.46089 * 178.24127 * 24 12 11 47 47 H 1.08998 * 109.46294 * 58.27156 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1787 2.6098 -0.0002 6 8 3.5723 3.6601 0.0011 7 6 5.6858 2.6099 -0.0014 8 1 6.0496 2.0955 -0.8910 9 6 6.1980 1.8915 1.2500 10 6 7.7281 1.9485 1.2714 11 6 8.1797 3.4103 1.2353 12 7 7.6650 4.0531 0.0194 13 6 8.1928 5.4170 -0.1187 14 6 9.6983 5.4114 0.1544 15 6 10.2478 6.8320 0.0111 16 6 11.7306 6.8266 0.2807 17 1 12.2308 5.9024 0.5298 18 6 12.4485 8.0015 0.2094 19 7 11.8395 9.1269 -0.0944 20 14 14.2862 7.9949 0.5443 21 1 15.0199 7.7600 -0.7252 22 1 14.6902 9.3054 1.1142 23 1 14.6095 6.9143 1.5101 24 6 6.1967 4.0525 -0.0006 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.9900 0.6026 -0.0013 33 1 5.8028 2.3824 2.1393 34 1 5.8725 0.8514 1.2318 35 1 8.1239 1.4238 0.4019 36 1 8.0972 1.4759 2.1816 37 1 9.2689 3.4540 1.2360 38 1 7.7948 3.9309 2.1121 39 1 8.0085 5.7771 -1.1309 40 1 7.6963 6.0730 0.5963 41 1 9.8825 5.0512 1.1665 42 1 10.1948 4.7555 -0.5606 43 1 10.0636 7.1925 -1.0009 44 1 9.7513 7.4876 0.7264 45 1 12.3447 9.9534 -0.1450 46 1 5.8455 4.5626 -0.8975 47 1 5.8212 4.5702 0.8820 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000102400044.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:39 Heat of formation + Delta-G solvation = -90.763279 kcal Electronic energy + Delta-G solvation = -22144.627790 eV Core-core repulsion = 18938.857884 eV Total energy + Delta-G solvation = -3205.769906 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.33712 -39.56096 -36.81477 -36.35768 -34.85747 -33.54253 -32.51785 -31.94262 -28.52953 -27.31850 -25.87345 -24.63475 -23.54005 -22.57671 -22.19873 -20.97441 -20.57849 -18.57475 -18.03885 -17.25995 -16.85018 -16.66500 -16.36092 -16.22191 -15.81566 -15.42324 -15.21061 -14.76699 -14.60763 -14.36589 -14.05271 -13.81541 -13.60817 -13.46351 -13.35033 -13.13648 -12.94507 -12.70082 -12.59564 -12.39756 -12.29288 -12.03643 -11.91592 -11.74815 -11.64190 -11.53620 -11.37828 -11.26240 -11.08994 -10.72451 -10.54935 -10.12656 -9.32236 -8.19887 -6.31499 1.40146 1.42227 1.53239 1.57732 2.10742 2.41201 2.97579 3.13084 3.58196 3.75549 3.87491 3.94106 4.08026 4.13083 4.19243 4.22576 4.29573 4.35768 4.42722 4.57481 4.64751 4.66139 4.71519 4.72305 4.77004 4.88223 4.90684 4.95318 5.00719 5.08175 5.09315 5.13854 5.15696 5.24985 5.29052 5.33791 5.42137 5.48666 5.50721 5.72128 5.84235 6.03184 6.16357 6.25416 6.52322 6.85408 7.22368 7.37789 8.92228 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.049728 B = 0.002433 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.927998 B =11503.897930 C =11938.607319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C 0.114 3.886 4 N -0.714 5.714 5 C 0.518 3.482 6 O -0.589 6.589 7 C -0.094 4.094 8 H 0.125 0.875 9 C -0.103 4.103 10 C -0.107 4.107 11 C 0.037 3.963 12 N -0.534 5.534 13 C 0.065 3.935 14 C -0.092 4.092 15 C 0.024 3.976 16 C -0.541 4.541 17 H 0.063 0.937 18 C -0.005 4.005 19 N -0.935 5.935 20 Si 0.969 3.031 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.261 1.261 24 C 0.077 3.923 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.418 0.582 33 H 0.054 0.946 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.020 0.980 39 H 0.065 0.935 40 H 0.016 0.984 41 H 0.058 0.942 42 H 0.059 0.941 43 H -0.009 1.009 44 H -0.014 1.014 45 H 0.263 0.737 46 H 0.063 0.937 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.680 -24.801 1.912 31.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.009 4.009 4 N -0.367 5.367 5 C 0.305 3.695 6 O -0.469 6.469 7 C -0.115 4.115 8 H 0.142 0.858 9 C -0.141 4.141 10 C -0.144 4.144 11 C -0.091 4.091 12 N -0.259 5.259 13 C -0.062 4.062 14 C -0.130 4.130 15 C -0.014 4.014 16 C -0.579 4.579 17 H 0.081 0.919 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.185 1.185 24 C -0.052 4.052 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.255 0.745 33 H 0.072 0.928 34 H 0.123 0.877 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.038 0.962 39 H 0.084 0.916 40 H 0.034 0.966 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.009 0.991 44 H 0.005 0.995 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -18.950 -24.174 1.493 30.752 hybrid contribution 0.628 1.285 0.665 1.577 sum -18.322 -22.889 2.159 29.398 Atomic orbital electron populations 1.21702 0.94399 1.02812 1.02066 1.21684 0.97040 0.93703 1.03882 1.21468 0.79256 0.98967 1.01224 1.45892 1.07571 1.08587 1.74623 1.20889 0.90457 0.83547 0.74600 1.90702 1.71424 1.33347 1.51443 1.21279 0.89751 0.97327 1.03177 0.85767 1.21589 0.96250 1.01448 0.94834 1.21580 0.94788 0.94101 1.03947 1.22391 1.00924 0.96188 0.89566 1.62031 1.07138 1.18063 1.38641 1.22033 0.95490 0.88459 1.00247 1.21525 0.93095 0.97620 1.00730 1.18990 0.95048 0.92639 0.94716 1.21678 0.94697 0.94373 1.47104 0.91884 1.26053 1.04037 0.95162 0.94959 1.70119 1.38055 0.99507 1.49888 0.85391 0.78868 0.77673 0.78770 1.19679 1.20848 1.18509 1.21733 0.87014 0.96075 1.00349 0.92733 0.90974 0.92709 0.90120 0.90039 0.92876 0.92890 0.74451 0.92766 0.87665 0.89859 0.89086 0.90168 0.96170 0.91613 0.96563 0.92378 0.92219 0.99106 0.99535 0.92814 0.91815 0.96369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 71.98 0.71 -0.37 16 2 C -0.13 -0.88 6.05 30.60 0.19 -0.69 16 3 C 0.11 1.59 5.67 86.38 0.49 2.08 16 4 N -0.71 -9.99 5.46 -463.06 -2.53 -12.52 16 5 C 0.52 11.62 7.16 87.66 0.63 12.25 16 6 O -0.59 -19.25 15.98 -3.03 -0.05 -19.30 16 7 C -0.09 -1.89 2.69 -11.49 -0.03 -1.93 16 8 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 9 C -0.10 -1.59 5.16 30.68 0.16 -1.43 16 10 C -0.11 -1.87 6.09 30.65 0.19 -1.68 16 11 C 0.04 0.99 4.85 86.33 0.42 1.41 16 12 N -0.53 -16.55 4.81 -896.37 -4.31 -20.85 16 13 C 0.07 2.49 5.27 86.30 0.46 2.95 16 14 C -0.09 -3.95 4.40 30.59 0.13 -3.82 16 15 C 0.02 1.31 4.97 29.85 0.15 1.45 16 16 C -0.54 -31.53 9.11 25.60 0.23 -31.30 16 17 H 0.06 3.49 7.74 -2.91 -0.02 3.46 16 18 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 19 N -0.94 -58.52 13.29 21.45 0.28 -58.24 16 20 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 23 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 24 C 0.08 2.24 4.00 86.33 0.35 2.58 16 25 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.07 0.36 8.14 -2.39 -0.02 0.35 16 27 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.42 2.86 7.95 -92.71 -0.74 2.12 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.10 0.84 7.66 -2.39 -0.02 0.82 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 2.33 5.81 -2.38 -0.01 2.31 16 38 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.02 0.65 8.08 -2.39 -0.02 0.63 16 41 H 0.06 2.39 6.21 -2.39 -0.01 2.38 16 42 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 43 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 44 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 45 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 46 H 0.06 2.03 8.10 -2.39 -0.02 2.01 16 47 H 0.02 0.60 8.08 -2.39 -0.02 0.58 16 Total: -1.00 -74.21 369.40 0.13 -74.08 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 0.17 Total: 8.13 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: 4.53 Total: -18.31 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -6.55 Total: -91.61 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.05 Total: -19.30 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -74.21 0.13 -74.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102400044.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.680 kcal (2) G-P(sol) polarization free energy of solvation -74.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds