Wall clock time and date at job start Tue Mar 31 2020 06:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47133 * 2 1 4 4 N 1.46504 * 109.47114 * 179.97438 * 3 2 1 5 5 C 1.34777 * 119.99967 * 179.97438 * 4 3 2 6 6 O 1.21276 * 119.99967 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.00005 * 180.02562 * 5 4 3 8 8 H 1.09000 * 109.50180 * 300.08590 * 7 5 4 9 9 C 1.53125 * 109.50360 * 60.19782 * 7 5 4 10 10 C 1.53115 * 109.16055 * 177.59526 * 9 7 5 11 11 C 1.53031 * 109.27989 * 302.34629 * 10 9 7 12 12 N 1.46847 * 109.52464 * 59.18135 * 11 10 9 13 13 C 1.46901 * 111.00094 * 174.16319 * 12 11 10 14 14 C 1.53000 * 109.46769 * 294.20476 * 13 12 11 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46616 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47104 * 119.99966 * 20 18 16 23 23 H 1.48489 * 109.47200 * 240.00246 * 20 18 16 24 24 C 1.46852 * 111.19471 * 298.25737 * 12 11 10 25 25 H 1.09003 * 109.46988 * 299.99941 * 1 2 3 26 26 H 1.09004 * 109.47269 * 60.00272 * 1 2 3 27 27 H 1.09002 * 109.47323 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46988 * 240.00059 * 2 1 3 29 29 H 1.09004 * 109.47126 * 120.00501 * 2 1 3 30 30 H 1.08990 * 109.47362 * 59.99954 * 3 2 1 31 31 H 1.09003 * 109.47289 * 299.99759 * 3 2 1 32 32 H 0.97003 * 120.00041 * 0.02562 * 4 3 2 33 33 H 1.08996 * 109.52183 * 297.50276 * 9 7 5 34 34 H 1.09003 * 109.52053 * 57.68988 * 9 7 5 35 35 H 1.09005 * 109.50547 * 62.28934 * 10 9 7 36 36 H 1.08997 * 109.50287 * 182.36393 * 10 9 7 37 37 H 1.08998 * 109.46501 * 299.16178 * 11 10 9 38 38 H 1.09005 * 109.46067 * 179.19362 * 11 10 9 39 39 H 1.09001 * 109.46874 * 174.20756 * 13 12 11 40 40 H 1.08992 * 109.47407 * 54.20773 * 13 12 11 41 41 H 1.09002 * 109.47398 * 300.00295 * 14 13 12 42 42 H 1.09001 * 109.47194 * 60.00475 * 14 13 12 43 43 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 44 44 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 45 45 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 46 46 H 1.09004 * 109.45871 * 181.75636 * 24 12 11 47 47 H 1.09001 * 109.46331 * 301.73771 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1789 2.6097 0.0002 6 8 3.5725 3.6599 -0.0002 7 6 5.6859 2.6097 0.0003 8 1 6.0497 2.0949 0.8895 9 6 6.1972 1.8918 -1.2519 10 6 7.7271 1.9488 -1.2745 11 6 8.1789 3.4105 -1.2380 12 7 7.6652 4.0527 -0.0214 13 6 8.1932 5.4166 0.1170 14 6 9.7056 5.3576 0.3408 15 6 10.2554 6.7780 0.4856 16 6 11.7451 6.7201 0.7054 17 1 12.2494 5.7656 0.7381 18 6 12.4645 7.8856 0.8637 19 7 11.8505 9.0479 0.8233 20 14 14.3111 7.8137 1.1368 21 1 14.7559 6.3970 1.1412 22 1 15.0018 8.5457 0.0449 23 1 14.6433 8.4414 2.4409 24 6 6.1968 4.0522 -0.0003 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9900 0.6024 0.0006 33 1 5.8716 0.8518 -1.2341 34 1 5.8012 2.3832 -2.1407 35 1 8.1237 1.4235 -0.4056 36 1 8.0955 1.4761 -2.1849 37 1 7.7935 3.9317 -2.1143 38 1 9.2680 3.4541 -1.2395 39 1 7.7187 5.9052 0.9680 40 1 7.9819 5.9818 -0.7907 41 1 9.9168 4.7923 1.2485 42 1 10.1800 4.8690 -0.5103 43 1 10.0441 7.3437 -0.4219 44 1 9.7810 7.2663 1.3367 45 1 12.3566 9.8679 0.9343 46 1 5.8464 4.5619 0.8973 47 1 5.8207 4.5702 -0.8825 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102400046.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:43 Heat of formation + Delta-G solvation = -71.208547 kcal Electronic energy + Delta-G solvation = -22108.578055 eV Core-core repulsion = 18903.656106 eV Total energy + Delta-G solvation = -3204.921949 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.37427 -38.39410 -36.09796 -34.78606 -33.22098 -32.65283 -31.07750 -30.74052 -26.94972 -26.45886 -24.37716 -23.46195 -22.14082 -22.04521 -20.77872 -19.72916 -19.61810 -17.26613 -16.44896 -16.21767 -16.11846 -15.46509 -14.99587 -14.82207 -14.42489 -14.36805 -14.09404 -13.66221 -13.45208 -13.25320 -13.18862 -12.69100 -12.50146 -12.48698 -12.19845 -11.67505 -11.62077 -11.48919 -11.35145 -11.25420 -10.98397 -10.89337 -10.74384 -10.57197 -10.39253 -10.36544 -9.83203 -9.52386 -9.34760 -9.27869 -8.99089 -8.30172 -8.01884 -5.95252 -3.97126 2.48639 2.89417 3.34017 3.41225 3.45643 4.13086 4.37480 4.48228 4.50093 4.51208 4.64816 4.75528 4.77043 5.07555 5.13392 5.16682 5.17544 5.33682 5.34802 5.40476 5.48568 5.54828 5.61745 5.64915 5.67665 5.72139 5.75040 5.84259 5.89627 6.02264 6.09750 6.15081 6.18108 6.27786 6.38885 6.76607 6.83040 7.18042 7.22380 7.41479 7.45386 7.74340 7.89601 8.03519 8.05816 8.48987 9.10470 9.66578 11.16238 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045171 B = 0.002427 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.714397 B =11532.770975 C =11913.724020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.734 5.734 5 C 0.519 3.481 6 O -0.537 6.537 7 C -0.103 4.103 8 H 0.106 0.894 9 C -0.109 4.109 10 C -0.114 4.114 11 C 0.048 3.952 12 N -0.539 5.539 13 C 0.058 3.942 14 C -0.104 4.104 15 C 0.020 3.980 16 C -0.516 4.516 17 H 0.055 0.945 18 C 0.054 3.946 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.076 3.924 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.400 0.600 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.030 0.970 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.029 0.971 41 H 0.055 0.945 42 H 0.047 0.953 43 H 0.013 0.987 44 H 0.016 0.984 45 H 0.259 0.741 46 H 0.080 0.920 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.421 -21.127 -3.796 28.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.007 4.007 4 N -0.387 5.387 5 C 0.305 3.695 6 O -0.413 6.413 7 C -0.125 4.125 8 H 0.124 0.876 9 C -0.147 4.147 10 C -0.152 4.152 11 C -0.080 4.080 12 N -0.264 5.264 13 C -0.069 4.069 14 C -0.142 4.142 15 C -0.017 4.017 16 C -0.555 4.555 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.053 4.053 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.234 0.766 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.032 0.968 44 H 0.034 0.966 45 H 0.069 0.931 46 H 0.098 0.902 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -19.682 -20.430 -3.383 28.570 hybrid contribution 0.896 0.163 -0.524 1.051 sum -18.786 -20.267 -3.906 27.910 Atomic orbital electron populations 1.21682 0.94542 1.02163 1.02405 1.21737 0.97030 0.95868 1.02734 1.21394 0.79784 0.97055 1.02460 1.46045 1.07213 1.08872 1.76590 1.20763 0.90178 0.83382 0.75132 1.90712 1.70531 1.31338 1.48760 1.21353 0.90232 0.99678 1.01212 0.87583 1.21564 0.97051 0.99582 0.96490 1.21581 0.94204 0.97021 1.02404 1.22170 1.01227 0.93837 0.90743 1.61972 1.06405 1.20547 1.37434 1.22273 0.97934 0.86579 1.00146 1.21655 0.91063 1.00851 1.00597 1.19086 0.95471 0.90128 0.97040 1.21291 0.93056 0.92424 1.48707 0.92634 1.25043 0.98441 0.95587 0.95568 1.69985 1.35575 0.97300 1.50717 0.86543 0.85755 0.78045 0.77703 1.19744 1.21101 1.21049 1.21774 0.87989 0.93503 1.02023 0.92301 0.92333 0.92171 0.91315 0.91262 0.91514 0.91584 0.76559 0.91667 0.91794 0.90773 0.91298 0.95203 0.89614 0.91117 0.95275 0.92595 0.93463 0.96824 0.96568 0.93131 0.90192 0.94410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 37.16 0.37 -0.30 16 2 C -0.14 -0.64 6.05 -26.74 -0.16 -0.81 16 3 C 0.12 0.88 5.67 -4.04 -0.02 0.85 16 4 N -0.73 -5.92 5.46 -60.30 -0.33 -6.25 16 5 C 0.52 6.05 7.16 -10.98 -0.08 5.97 16 6 O -0.54 -8.54 15.98 5.56 0.09 -8.45 16 7 C -0.10 -1.12 2.69 -91.69 -0.25 -1.37 16 8 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 9 C -0.11 -0.99 5.16 -26.61 -0.14 -1.13 16 10 C -0.11 -1.16 6.09 -26.66 -0.16 -1.32 16 11 C 0.05 0.66 5.29 -3.84 -0.02 0.64 16 12 N -0.54 -8.32 4.66 -234.67 -1.09 -9.42 16 13 C 0.06 1.05 4.96 -3.82 -0.02 1.03 16 14 C -0.10 -2.20 5.08 -26.73 -0.14 -2.34 16 15 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 16 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -27.48 13.29 55.43 0.74 -26.75 16 20 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.08 1.08 4.03 -3.83 -0.02 1.06 16 25 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.40 2.12 7.95 -40.82 -0.32 1.80 16 33 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 1.25 6.21 -51.93 -0.32 0.93 16 39 H 0.07 1.31 7.99 -51.93 -0.41 0.89 16 40 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.05 0.98 6.43 -51.93 -0.33 0.64 16 43 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.08 1.22 7.99 -51.93 -0.41 0.80 16 47 H 0.04 0.58 8.08 -51.93 -0.42 0.16 16 LS Contribution 370.50 15.07 5.58 5.58 Total: -1.00 -33.16 370.50 -10.15 -43.31 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -8.93 Total: -3.96 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -1.18 Total: -11.05 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: -0.69 Total: -42.41 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.45 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.16 -10.15 -43.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102400046.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.902 kcal (2) G-P(sol) polarization free energy of solvation -33.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds