Wall clock time and date at job start Tue Mar 31 2020 06:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47133 * 2 1 4 4 N 1.46504 * 109.47114 * 179.97438 * 3 2 1 5 5 C 1.34777 * 119.99967 * 179.97438 * 4 3 2 6 6 O 1.21276 * 119.99967 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.00005 * 180.02562 * 5 4 3 8 8 H 1.09000 * 109.50180 * 300.08590 * 7 5 4 9 9 C 1.53125 * 109.50360 * 60.19782 * 7 5 4 10 10 C 1.53115 * 109.16055 * 177.59526 * 9 7 5 11 11 C 1.53031 * 109.27989 * 302.34629 * 10 9 7 12 12 N 1.46847 * 109.52464 * 59.18135 * 11 10 9 13 13 C 1.46901 * 111.00094 * 174.16319 * 12 11 10 14 14 C 1.53000 * 109.46769 * 294.20476 * 13 12 11 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46616 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47104 * 119.99966 * 20 18 16 23 23 H 1.48489 * 109.47200 * 240.00246 * 20 18 16 24 24 C 1.46852 * 111.19471 * 298.25737 * 12 11 10 25 25 H 1.09003 * 109.46988 * 299.99941 * 1 2 3 26 26 H 1.09004 * 109.47269 * 60.00272 * 1 2 3 27 27 H 1.09002 * 109.47323 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46988 * 240.00059 * 2 1 3 29 29 H 1.09004 * 109.47126 * 120.00501 * 2 1 3 30 30 H 1.08990 * 109.47362 * 59.99954 * 3 2 1 31 31 H 1.09003 * 109.47289 * 299.99759 * 3 2 1 32 32 H 0.97003 * 120.00041 * 0.02562 * 4 3 2 33 33 H 1.08996 * 109.52183 * 297.50276 * 9 7 5 34 34 H 1.09003 * 109.52053 * 57.68988 * 9 7 5 35 35 H 1.09005 * 109.50547 * 62.28934 * 10 9 7 36 36 H 1.08997 * 109.50287 * 182.36393 * 10 9 7 37 37 H 1.08998 * 109.46501 * 299.16178 * 11 10 9 38 38 H 1.09005 * 109.46067 * 179.19362 * 11 10 9 39 39 H 1.09001 * 109.46874 * 174.20756 * 13 12 11 40 40 H 1.08992 * 109.47407 * 54.20773 * 13 12 11 41 41 H 1.09002 * 109.47398 * 300.00295 * 14 13 12 42 42 H 1.09001 * 109.47194 * 60.00475 * 14 13 12 43 43 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 44 44 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 45 45 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 46 46 H 1.09004 * 109.45871 * 181.75636 * 24 12 11 47 47 H 1.09001 * 109.46331 * 301.73771 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1789 2.6097 0.0002 6 8 3.5725 3.6599 -0.0002 7 6 5.6859 2.6097 0.0003 8 1 6.0497 2.0949 0.8895 9 6 6.1972 1.8918 -1.2519 10 6 7.7271 1.9488 -1.2745 11 6 8.1789 3.4105 -1.2380 12 7 7.6652 4.0527 -0.0214 13 6 8.1932 5.4166 0.1170 14 6 9.7056 5.3576 0.3408 15 6 10.2554 6.7780 0.4856 16 6 11.7451 6.7201 0.7054 17 1 12.2494 5.7656 0.7381 18 6 12.4645 7.8856 0.8637 19 7 11.8505 9.0479 0.8233 20 14 14.3111 7.8137 1.1368 21 1 14.7559 6.3970 1.1412 22 1 15.0018 8.5457 0.0449 23 1 14.6433 8.4414 2.4409 24 6 6.1968 4.0522 -0.0003 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9900 0.6024 0.0006 33 1 5.8716 0.8518 -1.2341 34 1 5.8012 2.3832 -2.1407 35 1 8.1237 1.4235 -0.4056 36 1 8.0955 1.4761 -2.1849 37 1 7.7935 3.9317 -2.1143 38 1 9.2680 3.4541 -1.2395 39 1 7.7187 5.9052 0.9680 40 1 7.9819 5.9818 -0.7907 41 1 9.9168 4.7923 1.2485 42 1 10.1800 4.8690 -0.5103 43 1 10.0441 7.3437 -0.4219 44 1 9.7810 7.2663 1.3367 45 1 12.3566 9.8679 0.9343 46 1 5.8464 4.5619 0.8973 47 1 5.8207 4.5702 -0.8825 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000102400046.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:43 Heat of formation + Delta-G solvation = -93.439561 kcal Electronic energy + Delta-G solvation = -22109.542064 eV Core-core repulsion = 18903.656106 eV Total energy + Delta-G solvation = -3205.885958 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.32620 -39.49973 -36.80892 -36.34521 -34.84806 -33.55122 -32.50941 -31.97017 -28.54411 -27.33047 -25.76597 -24.60925 -23.54895 -22.57017 -22.08145 -21.19916 -20.55756 -18.56273 -18.04149 -17.24799 -16.83405 -16.64186 -16.36691 -16.24897 -15.75641 -15.37325 -15.17932 -14.84966 -14.60980 -14.33731 -14.06999 -13.81824 -13.58579 -13.54865 -13.34562 -13.07174 -12.93932 -12.68635 -12.52292 -12.42235 -12.28737 -12.03588 -11.96452 -11.74791 -11.65320 -11.54043 -11.37137 -11.29595 -11.05900 -10.72671 -10.55295 -10.12574 -9.32789 -8.19812 -6.31165 1.40280 1.41007 1.54707 1.57915 2.10751 2.41423 2.96747 3.13202 3.58372 3.74981 3.87704 3.94174 4.07980 4.11296 4.18939 4.23487 4.31324 4.35881 4.44606 4.57511 4.65997 4.68129 4.71303 4.73332 4.76900 4.88062 4.92175 4.93942 5.00740 5.08089 5.09457 5.13927 5.15717 5.24988 5.29412 5.33806 5.42059 5.48711 5.52488 5.73745 5.85644 6.04014 6.17397 6.26547 6.52395 6.86032 7.22431 7.38112 8.92533 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045171 B = 0.002427 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.714397 B =11532.770975 C =11913.724020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C 0.115 3.885 4 N -0.714 5.714 5 C 0.518 3.482 6 O -0.589 6.589 7 C -0.094 4.094 8 H 0.123 0.877 9 C -0.103 4.103 10 C -0.106 4.106 11 C 0.041 3.959 12 N -0.536 5.536 13 C 0.067 3.933 14 C -0.085 4.085 15 C 0.023 3.977 16 C -0.539 4.539 17 H 0.062 0.938 18 C -0.005 4.005 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.260 1.260 22 H -0.278 1.278 23 H -0.278 1.278 24 C 0.077 3.923 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.418 0.582 33 H 0.105 0.895 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.023 0.977 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.019 0.981 41 H 0.056 0.944 42 H 0.054 0.946 43 H -0.012 1.012 44 H -0.010 1.010 45 H 0.263 0.737 46 H 0.062 0.938 47 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.851 -24.527 -4.021 31.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.009 4.009 4 N -0.367 5.367 5 C 0.305 3.695 6 O -0.469 6.469 7 C -0.116 4.116 8 H 0.141 0.859 9 C -0.141 4.141 10 C -0.144 4.144 11 C -0.087 4.087 12 N -0.260 5.260 13 C -0.061 4.061 14 C -0.123 4.123 15 C -0.014 4.014 16 C -0.577 4.577 17 H 0.080 0.920 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.183 1.183 22 H -0.204 1.204 23 H -0.204 1.204 24 C -0.051 4.051 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.255 0.745 33 H 0.123 0.877 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.041 0.959 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.006 0.994 44 H 0.008 0.992 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -19.121 -23.905 -3.613 30.824 hybrid contribution 0.655 1.244 -0.462 1.480 sum -18.466 -22.660 -4.075 29.514 Atomic orbital electron populations 1.21704 0.94396 1.02811 1.02068 1.21683 0.97044 0.93714 1.03877 1.21465 0.79254 0.98958 1.01229 1.45898 1.07573 1.08592 1.74634 1.20887 0.90451 0.83544 0.74598 1.90700 1.71420 1.33335 1.51435 1.21282 0.89762 0.97386 1.03163 0.85913 1.21583 0.96202 1.01453 0.94825 1.21565 0.94818 0.94058 1.03947 1.22322 1.00562 0.96313 0.89469 1.61957 1.07136 1.18237 1.38714 1.22009 0.96151 0.88594 0.99368 1.21375 0.92799 0.97297 1.00837 1.18995 0.95070 0.92790 0.94561 1.21712 0.94211 0.92934 1.48881 0.91957 1.26053 1.04122 0.95063 0.94991 1.70125 1.37868 0.98168 1.51449 0.85340 0.78851 0.78729 0.77769 1.18334 1.20372 1.20392 1.21730 0.86992 0.96048 1.00370 0.92754 0.92680 0.90981 0.90014 0.90160 0.92926 0.92827 0.74464 0.87703 0.92620 0.90000 0.88987 0.95897 0.90692 0.91942 0.96301 0.92568 0.92695 0.99403 0.99207 0.92816 0.91909 0.96214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 71.98 0.71 -0.37 16 2 C -0.13 -0.88 6.05 30.59 0.19 -0.69 16 3 C 0.11 1.59 5.67 86.38 0.49 2.08 16 4 N -0.71 -9.98 5.46 -463.07 -2.53 -12.51 16 5 C 0.52 11.59 7.16 87.66 0.63 12.21 16 6 O -0.59 -19.17 15.98 -3.02 -0.05 -19.22 16 7 C -0.09 -1.90 2.69 -11.49 -0.03 -1.93 16 8 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 9 C -0.10 -1.54 5.16 30.67 0.16 -1.39 16 10 C -0.11 -1.82 6.09 30.64 0.19 -1.64 16 11 C 0.04 1.08 5.29 86.32 0.46 1.53 16 12 N -0.54 -16.55 4.66 -896.36 -4.17 -20.72 16 13 C 0.07 2.53 4.96 86.30 0.43 2.96 16 14 C -0.09 -3.69 5.08 30.59 0.16 -3.54 16 15 C 0.02 1.30 4.97 29.85 0.15 1.44 16 16 C -0.54 -31.62 9.11 25.60 0.23 -31.38 16 17 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 18 C -0.01 -0.30 5.46 84.65 0.46 0.17 16 19 N -0.94 -58.60 13.29 21.45 0.28 -58.32 16 20 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 21 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 C 0.08 2.23 4.03 86.32 0.35 2.58 16 25 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 27 H 0.07 0.36 8.14 -2.39 -0.02 0.35 16 28 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.42 2.87 7.95 -92.71 -0.74 2.13 16 33 H 0.10 0.81 7.66 -2.39 -0.02 0.79 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.07 2.13 6.21 -2.38 -0.01 2.11 16 39 H 0.06 2.44 7.99 -2.39 -0.02 2.42 16 40 H 0.02 0.74 8.12 -2.39 -0.02 0.72 16 41 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.05 2.28 6.43 -2.39 -0.02 2.27 16 43 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 44 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 45 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 46 H 0.06 2.00 7.99 -2.39 -0.02 1.99 16 47 H 0.02 0.64 8.08 -2.39 -0.02 0.62 16 Total: -1.00 -74.36 370.50 0.30 -74.06 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 0.17 Total: 7.50 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 4.56 Total: -17.96 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -6.42 Total: -91.55 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.05 Total: -19.22 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -74.36 0.30 -74.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102400046.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.378 kcal (2) G-P(sol) polarization free energy of solvation -74.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds