Wall clock time and date at job start Tue Mar 31 2020 06:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47086 * 2 1 4 4 N 1.46498 * 109.47396 * 179.97438 * 3 2 1 5 5 C 1.36941 * 120.00061 * 270.00027 * 4 3 2 6 6 H 1.07998 * 119.99572 * 20.91083 * 5 4 3 7 7 C 1.38804 * 119.99970 * 200.91710 * 5 4 3 8 8 N 1.31619 * 120.00269 * 11.70746 * 7 5 4 9 9 Si 1.86807 * 119.99880 * 191.71040 * 7 5 4 10 10 H 1.48496 * 109.47150 * 59.99828 * 9 7 5 11 11 H 1.48501 * 109.47169 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47115 * 300.00039 * 9 7 5 13 13 C 1.46501 * 120.00300 * 89.99563 * 4 3 2 14 14 C 1.50695 * 109.46841 * 83.22899 * 13 4 3 15 15 O 1.21278 * 120.00443 * 0.02562 * 14 13 4 16 16 N 1.34778 * 119.99794 * 180.02562 * 14 13 4 17 17 C 1.46925 * 120.63288 * 5.35455 * 16 14 13 18 18 H 1.09001 * 109.58435 * 353.37487 * 17 16 14 19 19 C 1.52999 * 109.58666 * 113.79623 * 17 16 14 20 20 C 1.53186 * 108.77906 * 233.58695 * 17 16 14 21 21 C 1.53041 * 109.31607 * 305.36621 * 20 17 16 22 22 C 1.53044 * 109.53758 * 61.36083 * 21 20 17 23 23 C 1.46928 * 120.63300 * 185.33539 * 16 14 13 24 24 H 1.08997 * 109.58849 * 246.20085 * 23 16 14 25 25 C 1.53003 * 109.58444 * 6.62384 * 23 16 14 26 26 H 1.09001 * 109.47089 * 60.00259 * 1 2 3 27 27 H 1.09000 * 109.47248 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47289 * 300.00125 * 1 2 3 29 29 H 1.08995 * 109.47289 * 239.99875 * 2 1 3 30 30 H 1.09001 * 109.47089 * 119.99741 * 2 1 3 31 31 H 1.09002 * 109.47117 * 59.99383 * 3 2 1 32 32 H 1.09001 * 109.46945 * 299.99829 * 3 2 1 33 33 H 0.97005 * 119.99552 * 180.02562 * 8 7 5 34 34 H 1.09006 * 109.46898 * 323.23300 * 13 4 3 35 35 H 1.08999 * 109.47466 * 203.23101 * 13 4 3 36 36 H 1.09008 * 109.47278 * 179.29024 * 19 17 16 37 37 H 1.08989 * 109.47639 * 299.29357 * 19 17 16 38 38 H 1.08999 * 109.46773 * 59.29549 * 19 17 16 39 39 H 1.09003 * 109.50134 * 185.40821 * 20 17 16 40 40 H 1.09003 * 109.49707 * 65.31596 * 20 17 16 41 41 H 1.08997 * 109.46601 * 181.38446 * 21 20 17 42 42 H 1.09002 * 109.45467 * 301.34398 * 21 20 17 43 43 H 1.08994 * 109.49505 * 58.58764 * 22 21 20 44 44 H 1.08997 * 109.49617 * 178.65382 * 22 21 20 45 45 H 1.08997 * 109.47071 * 172.95189 * 25 23 16 46 46 H 1.09000 * 109.47430 * 292.94957 * 25 23 16 47 47 H 1.09003 * 109.47070 * 52.95366 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1892 1.4428 1.1868 6 1 3.7021 1.1090 2.0911 7 6 5.5086 1.8720 1.2269 8 7 6.0312 2.4906 0.1894 9 14 6.5425 1.5716 2.7535 10 1 6.6321 0.1119 3.0112 11 1 7.9060 2.1213 2.5439 12 1 5.9116 2.2421 3.9186 13 6 4.2381 1.4423 -1.2678 14 6 4.3443 2.8531 -1.7868 15 8 3.8562 3.7686 -1.1588 16 7 4.9818 3.0974 -2.9488 17 6 5.4756 1.9902 -3.7789 18 1 5.3443 1.0480 -3.2469 19 6 4.6991 1.9511 -5.0966 20 6 6.9635 2.2148 -4.0661 21 6 7.1557 3.6003 -4.6872 22 6 6.6867 4.6727 -3.7012 23 6 5.1957 4.4759 -3.4100 24 1 4.6197 4.6508 -4.3186 25 6 4.7521 5.4554 -2.3215 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6765 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 6.9534 2.7903 0.2174 34 1 3.7071 0.8270 -1.9942 35 1 5.2375 1.0371 -1.1098 36 1 5.0755 1.1370 -5.7162 37 1 3.6410 1.7912 -4.8902 38 1 4.8279 2.8972 -5.6224 39 1 7.3194 1.4527 -4.7594 40 1 7.5272 2.1521 -3.1352 41 1 8.2105 3.7529 -4.9152 42 1 6.5721 3.6707 -5.6051 43 1 7.2529 4.5868 -2.7739 44 1 6.8461 5.6600 -4.1347 45 1 5.0258 6.4697 -2.6121 46 1 3.6712 5.3930 -2.1950 47 1 5.2432 5.2016 -1.3821 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118004580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:31 Heat of formation + Delta-G solvation = -11.803554 kcal Electronic energy + Delta-G solvation = -24821.440478 eV Core-core repulsion = 21619.094522 eV Total energy + Delta-G solvation = -3202.345956 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.64120 -36.93175 -35.49890 -33.16996 -32.69310 -31.92863 -30.45516 -28.67665 -26.66540 -26.01254 -25.46151 -23.00383 -22.33790 -21.23911 -20.30063 -19.76179 -17.65547 -16.55352 -15.86082 -15.37939 -14.87227 -14.53841 -14.30477 -14.00034 -13.71087 -13.60106 -13.12209 -13.01938 -12.68693 -12.55930 -12.43562 -12.12209 -12.01991 -11.46352 -11.36524 -11.20714 -11.10486 -11.07957 -10.90137 -10.72310 -10.62014 -10.47562 -10.45284 -10.25837 -10.12634 -10.02638 -9.99595 -9.82111 -9.64511 -8.59770 -7.75035 -7.51415 -6.65367 -5.71957 -3.10721 3.42160 3.47071 3.48076 3.94868 4.31380 4.56831 5.04316 5.20551 5.22310 5.41516 5.42748 5.49373 5.57841 5.67322 5.69068 5.76304 5.78560 5.84574 5.89052 6.04826 6.07348 6.12234 6.17889 6.23991 6.29902 6.30771 6.38211 6.44231 6.45940 6.51038 6.53626 6.56073 6.66202 6.71880 6.80998 6.96730 6.98065 7.19937 7.26504 7.30062 7.69847 7.81362 8.40444 8.68896 9.25257 9.78973 9.95977 10.37398 11.36229 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013512 B = 0.007457 C = 0.005793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.790657 B = 3754.072753 C = 4831.869475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.143 4.143 3 C 0.153 3.847 4 N -0.574 5.574 5 C -0.245 4.245 6 H 0.071 0.929 7 C 0.002 3.998 8 N -0.901 5.901 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.293 1.293 12 H -0.286 1.286 13 C 0.167 3.833 14 C 0.536 3.464 15 O -0.525 6.525 16 N -0.618 5.618 17 C 0.143 3.857 18 H 0.089 0.911 19 C -0.162 4.162 20 C -0.128 4.128 21 C -0.115 4.115 22 C -0.129 4.129 23 C 0.152 3.848 24 H 0.048 0.952 25 C -0.130 4.130 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.033 0.967 33 H 0.252 0.748 34 H 0.025 0.975 35 H 0.106 0.894 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.020 0.980 46 H 0.069 0.931 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.954 -1.558 -11.046 11.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.183 4.183 3 C 0.026 3.974 4 N -0.293 5.293 5 C -0.375 4.375 6 H 0.089 0.911 7 C -0.196 4.196 8 N -0.547 5.547 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.219 1.219 12 H -0.212 1.212 13 C 0.037 3.963 14 C 0.325 3.675 15 O -0.399 6.399 16 N -0.357 5.357 17 C 0.038 3.962 18 H 0.107 0.893 19 C -0.220 4.220 20 C -0.166 4.166 21 C -0.152 4.152 22 C -0.168 4.168 23 C 0.048 3.952 24 H 0.066 0.934 25 C -0.187 4.187 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.043 0.957 35 H 0.124 0.876 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.039 0.961 46 H 0.088 0.912 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.081 -0.993 -10.624 10.725 hybrid contribution 0.914 0.027 0.694 1.148 sum -0.167 -0.967 -9.929 9.978 Atomic orbital electron populations 1.21715 0.97290 1.00327 1.01100 1.22124 0.93774 1.00967 1.01416 1.20763 0.84771 0.92660 0.99204 1.43711 0.99518 1.84266 1.01796 1.19166 0.94411 1.36399 0.87509 0.91142 1.24877 0.98625 0.98574 0.97484 1.69772 1.13980 1.41246 1.29700 0.86296 0.79444 0.77614 0.82877 1.21306 1.21855 1.21220 1.20612 0.98677 0.90814 0.86246 1.21945 0.74736 0.93836 0.77013 1.90526 1.47678 1.45595 1.56136 1.48407 1.60263 1.04257 1.22726 1.20992 0.92568 0.91275 0.91348 0.89305 1.22185 1.00566 1.01595 0.97666 1.21895 0.96783 0.96679 1.01276 1.21488 1.00212 0.95272 0.98264 1.21980 0.97290 0.97724 0.99801 1.20917 0.93965 0.83671 0.96632 0.93445 1.22137 1.03216 0.94344 0.98974 0.93445 0.93791 0.93215 0.93160 0.92298 0.93649 0.94855 0.93773 0.95743 0.87624 0.92283 0.92651 0.92528 0.91946 0.90995 0.92688 0.92311 0.91274 0.92328 0.96114 0.91227 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.14 -2.58 6.26 -26.73 -0.17 -2.75 16 3 C 0.15 3.32 5.60 -4.04 -0.02 3.30 16 4 N -0.57 -14.34 2.04 -174.61 -0.36 -14.70 16 5 C -0.25 -6.70 9.69 -15.06 -0.15 -6.84 16 6 H 0.07 1.90 7.86 -52.49 -0.41 1.49 16 7 C 0.00 0.05 5.08 -17.43 -0.09 -0.04 16 8 N -0.90 -24.94 8.93 55.49 0.50 -24.44 16 9 Si 0.91 21.96 29.57 -169.99 -5.03 16.93 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 C 0.17 3.88 3.72 -5.20 -0.02 3.86 16 14 C 0.54 12.45 5.66 -10.99 -0.06 12.39 16 15 O -0.53 -14.03 11.68 5.56 0.06 -13.97 16 16 N -0.62 -11.81 2.68 -157.74 -0.42 -12.23 16 17 C 0.14 2.23 3.12 -67.60 -0.21 2.02 16 18 H 0.09 1.44 5.93 -51.93 -0.31 1.14 16 19 C -0.16 -2.06 9.02 37.16 0.34 -1.72 16 20 C -0.13 -1.81 5.55 -26.61 -0.15 -1.95 16 21 C -0.11 -1.51 5.68 -26.69 -0.15 -1.66 16 22 C -0.13 -2.00 5.37 -26.61 -0.14 -2.14 16 23 C 0.15 2.69 3.08 -67.60 -0.21 2.48 16 24 H 0.05 0.78 7.48 -51.93 -0.39 0.39 16 25 C -0.13 -2.60 7.61 37.16 0.28 -2.31 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.05 1.02 8.04 -51.93 -0.42 0.61 16 32 H 0.03 0.72 8.07 -51.93 -0.42 0.30 16 33 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.02 0.51 7.70 -51.93 -0.40 0.11 16 35 H 0.11 2.65 6.08 -51.93 -0.32 2.33 16 36 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.70 5.72 -51.93 -0.30 0.40 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.70 6.51 -51.93 -0.34 0.37 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 1.52 6.64 -51.93 -0.35 1.17 16 47 H 0.08 1.92 6.85 -51.93 -0.36 1.57 16 LS Contribution 352.61 15.07 5.31 5.31 Total: -1.00 -29.83 352.61 -8.94 -38.77 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -8.63 Total: 1.49 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -0.38 Total: 2.84 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.28 Total: -51.38 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.06 Total: -13.97 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.83 -8.94 -38.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118004580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.965 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds