Wall clock time and date at job start Tue Mar 31 2020 06:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47366 * 2 1 4 4 N 1.46500 * 109.47333 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00204 * 264.01405 * 4 3 2 6 6 H 1.07998 * 120.00245 * 187.76631 * 5 4 3 7 7 C 1.38815 * 120.00078 * 7.77411 * 5 4 3 8 8 N 1.31617 * 119.99749 * 25.65913 * 7 5 4 9 9 Si 1.86801 * 119.99897 * 205.66547 * 7 5 4 10 10 H 1.48501 * 109.47047 * 84.98501 * 9 7 5 11 11 H 1.48502 * 109.46849 * 204.98099 * 9 7 5 12 12 H 1.48499 * 109.46967 * 324.98149 * 9 7 5 13 13 C 1.46506 * 119.99741 * 84.01938 * 4 3 2 14 14 C 1.50697 * 109.46595 * 269.99877 * 13 4 3 15 15 O 1.21287 * 120.00490 * 0.02562 * 14 13 4 16 16 N 1.34780 * 120.00199 * 180.02562 * 14 13 4 17 17 C 1.46489 * 120.00825 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.47792 * 179.97438 * 17 16 14 19 19 C 1.53003 * 109.46946 * 64.99979 * 18 17 16 20 20 C 1.53000 * 109.47407 * 180.02562 * 19 18 17 21 21 C 1.53005 * 109.47267 * 300.00299 * 20 19 18 22 22 C 1.53003 * 109.47151 * 59.99545 * 21 20 19 23 23 C 1.52997 * 109.47573 * 184.99951 * 18 17 16 24 24 H 1.09001 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47214 * 300.00127 * 1 2 3 26 26 H 1.09000 * 109.47215 * 59.99980 * 1 2 3 27 27 H 1.09005 * 109.47214 * 239.99873 * 2 1 3 28 28 H 1.09000 * 109.47215 * 120.00020 * 2 1 3 29 29 H 1.08997 * 109.47357 * 59.99932 * 3 2 1 30 30 H 1.08997 * 109.47478 * 300.00238 * 3 2 1 31 31 H 0.97006 * 119.99591 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.46909 * 150.00384 * 13 4 3 33 33 H 1.08997 * 109.47311 * 29.99507 * 13 4 3 34 34 H 0.97006 * 119.99704 * 0.02562 * 16 14 13 35 35 H 1.09007 * 109.46908 * 59.99623 * 17 16 14 36 36 H 1.09004 * 109.47187 * 300.00645 * 17 16 14 37 37 H 1.09003 * 109.47340 * 305.00405 * 18 17 16 38 38 H 1.08997 * 109.47252 * 300.00368 * 19 18 17 39 39 H 1.09002 * 109.47126 * 60.00454 * 19 18 17 40 40 H 1.08993 * 109.47615 * 179.97438 * 20 19 18 41 41 H 1.09004 * 109.46819 * 59.99556 * 20 19 18 42 42 H 1.08994 * 109.46809 * 300.00106 * 21 20 19 43 43 H 1.08994 * 109.46811 * 179.97438 * 21 20 19 44 44 H 1.08997 * 109.47252 * 180.02562 * 22 21 20 45 45 H 1.09002 * 109.47126 * 60.00027 * 22 21 20 46 46 H 1.09002 * 109.47288 * 300.00029 * 23 18 17 47 47 H 1.09003 * 109.47109 * 60.00226 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1892 1.5662 1.1803 6 1 5.2618 1.6924 1.1718 7 6 3.5043 1.5295 2.3871 8 7 2.3518 0.8992 2.4707 9 14 4.2181 2.3747 3.8923 10 1 3.8361 3.8097 3.8819 11 1 3.6873 1.7301 5.1202 12 1 5.6982 2.2562 3.8712 13 6 4.2380 1.3100 -1.2610 14 6 4.4892 -0.1484 -1.5451 15 8 4.0944 -0.9941 -0.7705 16 7 5.1526 -0.5133 -2.6602 17 6 5.3964 -1.9310 -2.9369 18 6 6.1620 -2.0694 -4.2542 19 6 7.5494 -1.4415 -4.1062 20 6 8.3149 -1.5793 -5.4237 21 6 8.4606 -3.0610 -5.7764 22 6 7.0732 -3.6889 -5.9245 23 6 6.3077 -3.5512 -4.6063 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8899 31 1 1.8730 0.8739 3.3140 32 1 5.1904 1.8346 -1.1845 33 1 3.6492 1.7417 -2.0703 34 1 5.4687 0.1631 -3.2796 35 1 4.4438 -2.4552 -3.0138 36 1 5.9845 -2.3633 -2.1273 37 1 5.6153 -1.5595 -5.0475 38 1 7.4456 -0.3859 -3.8554 39 1 8.0962 -1.9514 -3.3129 40 1 9.3030 -1.1317 -5.3185 41 1 7.7679 -1.0692 -6.2167 42 1 9.0074 -3.5711 -4.9835 43 1 9.0055 -3.1591 -6.7153 44 1 7.1769 -4.7445 -6.1753 45 1 6.5262 -3.1787 -6.7174 46 1 6.8545 -4.0610 -3.8130 47 1 5.3193 -3.9985 -4.7118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122986015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:11 Heat of formation + Delta-G solvation = -40.037909 kcal Electronic energy + Delta-G solvation = -23159.722353 eV Core-core repulsion = 19956.152064 eV Total energy + Delta-G solvation = -3203.570289 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.34553 -38.24916 -35.74405 -34.18956 -31.84223 -31.45217 -31.01281 -30.73408 -27.20065 -25.39446 -25.03822 -22.80708 -21.98818 -21.13671 -20.10829 -19.82036 -19.33022 -16.74481 -16.38924 -15.50174 -15.40685 -14.91881 -14.68009 -14.27899 -14.25147 -13.89650 -13.55534 -13.29072 -12.91556 -12.76633 -12.50250 -12.36009 -12.17962 -12.00015 -11.73222 -11.37157 -11.30109 -11.21471 -11.04320 -10.80501 -10.61050 -10.54730 -10.37796 -10.28616 -10.18884 -10.03972 -9.87276 -9.62183 -9.04734 -8.84375 -8.38858 -8.17786 -6.80420 -5.65733 -2.97150 3.45177 3.52028 3.53439 3.66760 3.83605 4.49255 4.56658 4.57004 4.60196 4.99132 5.08513 5.18066 5.30231 5.32687 5.34381 5.42769 5.47268 5.58337 5.67270 5.77776 5.82705 5.83511 5.97606 5.98442 6.01745 6.09317 6.13178 6.21796 6.24482 6.30203 6.37411 6.38069 6.41546 6.70379 6.78843 7.05297 7.12434 7.36613 7.47845 7.75520 7.95226 8.20470 8.38202 8.44479 9.21469 9.32605 9.92701 10.36556 11.37045 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023056 B = 0.003719 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.122568 B = 7527.580574 C = 8237.633202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.171 3.829 4 N -0.570 5.570 5 C -0.249 4.249 6 H 0.073 0.927 7 C 0.001 3.999 8 N -0.885 5.885 9 Si 0.898 3.102 10 H -0.289 1.289 11 H -0.294 1.294 12 H -0.283 1.283 13 C 0.131 3.869 14 C 0.467 3.533 15 O -0.507 6.507 16 N -0.749 5.749 17 C 0.125 3.875 18 C -0.096 4.096 19 C -0.115 4.115 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.113 4.113 24 H 0.030 0.970 25 H 0.049 0.951 26 H 0.027 0.973 27 H 0.024 0.976 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.000 1.000 31 H 0.250 0.750 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.389 0.611 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.994 -4.503 -17.277 19.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.047 3.953 4 N -0.288 5.288 5 C -0.378 4.378 6 H 0.091 0.909 7 C -0.197 4.197 8 N -0.530 5.530 9 Si 0.728 3.272 10 H -0.216 1.216 11 H -0.220 1.220 12 H -0.208 1.208 13 C -0.001 4.001 14 C 0.250 3.750 15 O -0.379 6.379 16 N -0.406 5.406 17 C 0.000 4.000 18 C -0.115 4.115 19 C -0.152 4.152 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.151 4.151 24 H 0.049 0.951 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.117 0.883 29 H 0.108 0.892 30 H 0.018 0.982 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.222 0.778 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.553 -5.118 -16.463 18.822 hybrid contribution 0.535 0.344 0.443 0.775 sum 8.089 -4.775 -16.020 18.570 Atomic orbital electron populations 1.21688 0.99352 0.99023 0.99638 1.22055 0.91638 0.99997 1.02257 1.20992 0.81306 0.94934 0.98106 1.44255 1.01964 1.81499 1.01038 1.19218 0.92082 1.42921 0.83586 0.90938 1.24724 0.97686 1.00108 0.97153 1.70226 1.16945 1.41131 1.24697 0.86357 0.78345 0.79800 0.82683 1.21610 1.22010 1.20847 1.20923 0.97844 0.90301 0.91058 1.23539 0.76676 0.95097 0.79643 1.90687 1.48330 1.52967 1.45939 1.46547 1.61105 1.06994 1.25990 1.21213 0.99052 0.84071 0.95627 1.21384 0.96191 0.96624 0.97292 1.21597 0.95251 1.00978 0.97397 1.21539 1.00139 0.96316 0.97685 1.21546 0.97026 0.96070 1.01150 1.21527 0.96018 1.00399 0.97586 1.21523 1.00506 0.95577 0.97490 0.95058 0.93210 0.95398 0.95717 0.88262 0.89171 0.98178 0.93917 0.90953 0.91632 0.77760 0.92465 0.92373 0.90840 0.91709 0.91809 0.92147 0.92094 0.92047 0.92352 0.92143 0.92070 0.91703 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.91 37.16 0.37 -2.56 16 2 C -0.12 -2.99 4.74 -26.74 -0.13 -3.11 16 3 C 0.17 4.27 4.92 -4.05 -0.02 4.25 16 4 N -0.57 -14.41 2.12 -174.61 -0.37 -14.78 16 5 C -0.25 -6.91 9.70 -15.06 -0.15 -7.06 16 6 H 0.07 1.98 7.94 -52.49 -0.42 1.57 16 7 C 0.00 0.04 4.89 -17.43 -0.09 -0.05 16 8 N -0.89 -25.53 8.63 55.49 0.48 -25.05 16 9 Si 0.90 22.02 29.62 -169.99 -5.04 16.99 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.13 2.65 6.19 -5.19 -0.03 2.62 16 14 C 0.47 9.54 7.55 -10.99 -0.08 9.45 16 15 O -0.51 -13.01 14.03 5.55 0.08 -12.94 16 16 N -0.75 -11.30 5.28 -60.30 -0.32 -11.62 16 17 C 0.13 1.74 5.06 -4.05 -0.02 1.72 16 18 C -0.10 -0.97 2.22 -90.62 -0.20 -1.17 16 19 C -0.11 -1.08 5.08 -26.73 -0.14 -1.22 16 20 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 21 C -0.12 -0.92 5.92 -26.73 -0.16 -1.07 16 22 C -0.12 -0.92 5.93 -26.70 -0.16 -1.08 16 23 C -0.11 -1.04 5.21 -26.71 -0.14 -1.18 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.62 6.42 -51.93 -0.33 0.29 16 28 H 0.10 2.91 6.36 -51.93 -0.33 2.57 16 29 H 0.09 2.47 5.82 -51.93 -0.30 2.16 16 30 H 0.00 0.00 7.98 -51.93 -0.41 -0.41 16 31 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.07 1.33 8.03 -51.93 -0.42 0.92 16 33 H 0.07 1.15 7.95 -51.93 -0.41 0.73 16 34 H 0.39 4.61 7.65 -40.82 -0.31 4.30 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.61 7.18 -51.93 -0.37 0.24 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 360.03 15.07 5.43 5.43 Total: -1.00 -31.91 360.03 -9.63 -41.54 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -8.79 Total: 1.99 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -1.10 Total: -1.55 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.21 Total: -51.45 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.08 Total: -12.94 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.04 Total: 16.99 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.91 -9.63 -41.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122986015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.500 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds