Wall clock time and date at job start Tue Mar 31 2020 06:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47287 * 2 1 4 4 N 1.46494 * 109.47094 * 180.02562 * 3 2 1 5 5 C 1.36938 * 119.99749 * 272.13485 * 4 3 2 6 6 H 1.07998 * 120.00119 * 8.57247 * 5 4 3 7 7 C 1.38816 * 119.99868 * 188.56723 * 5 4 3 8 8 N 1.31616 * 120.00050 * 24.84380 * 7 5 4 9 9 Si 1.86798 * 119.99797 * 204.84724 * 7 5 4 10 10 H 1.48498 * 109.47495 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47438 * 120.00017 * 9 7 5 12 12 H 1.48505 * 109.46827 * 239.99629 * 9 7 5 13 13 C 1.46500 * 120.00273 * 92.14072 * 4 3 2 14 14 C 1.50700 * 109.47442 * 89.99732 * 13 4 3 15 15 O 1.21281 * 119.99470 * 0.02562 * 14 13 4 16 16 N 1.34774 * 120.00303 * 180.02562 * 14 13 4 17 17 C 1.46923 * 120.63213 * 180.02562 * 16 14 13 18 18 C 1.53191 * 108.77496 * 126.38700 * 17 16 14 19 19 H 1.08999 * 109.50144 * 294.68378 * 18 17 16 20 20 C 1.52996 * 109.49921 * 174.58704 * 18 17 16 21 21 C 1.53039 * 109.31411 * 54.63494 * 18 17 16 22 22 C 1.53037 * 109.53994 * 298.63306 * 21 18 17 23 23 H 1.09000 * 109.49935 * 301.41581 * 22 21 18 24 24 C 1.52997 * 109.50211 * 181.31275 * 22 21 18 25 25 C 1.46929 * 120.62659 * 359.97438 * 16 14 13 26 26 H 1.09001 * 109.46610 * 60.00339 * 1 2 3 27 27 H 1.08996 * 109.47101 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47042 * 300.00112 * 1 2 3 29 29 H 1.09002 * 109.47042 * 239.99888 * 2 1 3 30 30 H 1.08998 * 109.46930 * 120.00350 * 2 1 3 31 31 H 1.09002 * 109.47171 * 59.99967 * 3 2 1 32 32 H 1.09005 * 109.47080 * 299.99915 * 3 2 1 33 33 H 0.97003 * 120.00117 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.46801 * 329.99442 * 13 4 3 35 35 H 1.09002 * 109.47318 * 209.99855 * 13 4 3 36 36 H 1.09001 * 109.58845 * 6.60019 * 17 16 14 37 37 H 1.08993 * 109.58735 * 246.17700 * 17 16 14 38 38 H 1.08999 * 109.47130 * 300.16393 * 20 18 17 39 39 H 1.09005 * 109.47560 * 60.15985 * 20 18 17 40 40 H 1.09003 * 109.47717 * 180.16292 * 20 18 17 41 41 H 1.09007 * 109.46185 * 178.61421 * 21 18 17 42 42 H 1.09000 * 109.44785 * 58.64917 * 21 18 17 43 43 H 1.09008 * 109.46570 * 60.00308 * 24 22 21 44 44 H 1.08999 * 109.47221 * 179.97438 * 24 22 21 45 45 H 1.09000 * 109.47226 * 300.00545 * 24 22 21 46 46 H 1.08998 * 109.57997 * 113.82860 * 25 16 14 47 47 H 1.08999 * 109.58667 * 353.40395 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1902 1.3980 1.1842 6 1 3.6596 1.2240 2.1086 7 6 5.5667 1.5767 1.1971 8 7 6.1522 2.2489 0.2287 9 14 6.5882 0.8631 2.5887 10 1 5.6977 0.1576 3.5451 11 1 7.5786 -0.0949 2.0350 12 1 7.3003 1.9597 3.2928 13 6 4.2371 1.4900 -1.2687 14 6 4.4881 2.9261 -1.6504 15 8 4.0947 3.8216 -0.9334 16 7 5.1498 3.2152 -2.7884 17 6 5.4026 4.6103 -3.1735 18 6 6.9024 4.7867 -3.4311 19 1 7.4511 4.6395 -2.5008 20 6 7.1669 6.1965 -3.9631 21 6 7.3632 3.7560 -4.4643 22 6 7.1293 2.3452 -3.9194 23 1 7.6758 2.2210 -2.9845 24 6 7.6203 1.3159 -4.9393 25 6 5.6329 2.1411 -3.6668 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 7.1140 2.3740 0.2378 34 1 3.6477 1.0049 -2.0469 35 1 5.1895 0.9716 -1.1581 36 1 5.0897 5.2743 -2.3677 37 1 4.8459 4.8456 -4.0805 38 1 6.6167 6.3433 -4.8926 39 1 6.8386 6.9303 -3.2269 40 1 8.2338 6.3206 -4.1490 41 1 8.4250 3.8953 -4.6677 42 1 6.7965 3.8879 -5.3860 43 1 8.6851 1.4633 -5.1204 44 1 7.4540 0.3112 -4.5505 45 1 7.0723 1.4398 -5.8733 46 1 5.0951 2.1744 -4.6143 47 1 5.4719 1.1760 -3.1865 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122991200.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:17 Heat of formation + Delta-G solvation = -29.820357 kcal Electronic energy + Delta-G solvation = -24213.700172 eV Core-core repulsion = 21010.572949 eV Total energy + Delta-G solvation = -3203.127223 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.29720 -37.13303 -35.50246 -33.40707 -32.87177 -32.64275 -30.50680 -27.71237 -26.49334 -25.97604 -25.49083 -24.38849 -22.05488 -20.51807 -20.23835 -19.76164 -18.24816 -16.62925 -15.94742 -15.22258 -14.90464 -14.63994 -14.42996 -14.27861 -13.88991 -13.62458 -13.11326 -12.95911 -12.70071 -12.59318 -12.47887 -12.18750 -11.93869 -11.90257 -11.51699 -11.46059 -11.33238 -11.18426 -10.94206 -10.69264 -10.63308 -10.51026 -10.47139 -10.26814 -10.15221 -10.04270 -9.98672 -9.74934 -9.72152 -8.68177 -8.14208 -7.57767 -6.83766 -5.74929 -3.00021 3.41406 3.50350 3.52464 3.98955 4.33538 4.59065 4.92386 5.10430 5.14239 5.26852 5.35133 5.46911 5.58582 5.66046 5.66499 5.75225 5.75766 5.77154 5.82711 5.90664 5.95836 6.03499 6.04284 6.06872 6.15097 6.22247 6.26396 6.27739 6.38573 6.42703 6.46447 6.49543 6.56075 6.61006 6.61565 6.81178 6.81765 6.94818 7.12319 7.23922 7.56720 7.83859 8.31574 8.65202 9.22106 9.77121 9.94854 10.34038 11.34575 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014010 B = 0.006197 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.049093 B = 4517.023318 C = 5298.988572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.153 3.847 4 N -0.576 5.576 5 C -0.241 4.241 6 H 0.077 0.923 7 C -0.003 4.003 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.295 1.295 13 C 0.166 3.834 14 C 0.536 3.464 15 O -0.533 6.533 16 N -0.628 5.628 17 C 0.125 3.875 18 C -0.107 4.107 19 H 0.076 0.924 20 C -0.142 4.142 21 C -0.101 4.101 22 C -0.110 4.110 23 H 0.080 0.920 24 C -0.142 4.142 25 C 0.127 3.873 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.034 0.966 33 H 0.250 0.750 34 H 0.033 0.967 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.045 0.955 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.049 0.951 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.014 -0.774 -11.809 11.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.182 4.182 3 C 0.026 3.974 4 N -0.295 5.295 5 C -0.370 4.370 6 H 0.094 0.906 7 C -0.200 4.200 8 N -0.541 5.541 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.218 1.218 12 H -0.222 1.222 13 C 0.036 3.964 14 C 0.324 3.676 15 O -0.406 6.406 16 N -0.365 5.365 17 C 0.001 3.999 18 C -0.127 4.127 19 H 0.095 0.905 20 C -0.200 4.200 21 C -0.139 4.139 22 C -0.129 4.129 23 H 0.098 0.902 24 C -0.200 4.200 25 C 0.003 3.997 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.124 -0.266 -11.334 11.338 hybrid contribution 0.968 -0.162 0.677 1.192 sum 0.844 -0.429 -10.657 10.699 Atomic orbital electron populations 1.21724 0.97285 1.00396 1.01084 1.22115 0.93706 1.00714 1.01637 1.20761 0.84428 0.93064 0.99170 1.43944 0.99686 1.83787 1.02114 1.19257 0.89652 1.41688 0.86380 0.90562 1.24665 0.97314 0.99913 0.98104 1.69937 1.09221 1.40173 1.34738 0.86272 0.80344 0.78792 0.81784 1.20521 1.21790 1.22221 1.20721 0.97787 0.91407 0.86480 1.22077 0.74657 0.93789 0.77075 1.90484 1.51910 1.49116 1.49121 1.48321 1.59331 1.04744 1.24126 1.21288 0.93656 0.85470 0.99467 1.21497 0.97595 0.94287 0.99305 0.90550 1.21750 1.00940 0.96562 1.00713 1.21569 1.00279 0.94229 0.97832 1.21511 0.97245 0.94651 0.99491 0.90180 1.21759 1.00606 0.98982 0.98684 1.21457 0.92873 0.91749 0.93624 0.93446 0.93726 0.93212 0.93053 0.92092 0.93723 0.94769 0.93929 0.94948 0.87971 0.89880 0.93714 0.93029 0.92687 0.92991 0.92583 0.92514 0.92951 0.92534 0.92980 0.93278 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.14 -2.54 6.25 -26.73 -0.17 -2.70 16 3 C 0.15 3.29 5.67 -4.05 -0.02 3.26 16 4 N -0.58 -14.51 2.02 -174.61 -0.35 -14.86 16 5 C -0.24 -6.65 9.70 -15.06 -0.15 -6.79 16 6 H 0.08 2.10 7.94 -52.49 -0.42 1.68 16 7 C 0.00 -0.08 4.90 -17.43 -0.09 -0.17 16 8 N -0.89 -25.20 8.96 55.49 0.50 -24.70 16 9 Si 0.90 21.97 29.62 -169.99 -5.04 16.93 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 13 C 0.17 3.90 3.77 -5.19 -0.02 3.88 16 14 C 0.54 12.94 5.76 -10.99 -0.06 12.88 16 15 O -0.53 -15.26 15.57 5.56 0.09 -15.17 16 16 N -0.63 -12.37 2.97 -172.81 -0.51 -12.88 16 17 C 0.13 2.23 5.72 -3.71 -0.02 2.21 16 18 C -0.11 -1.64 2.87 -90.50 -0.26 -1.90 16 19 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 20 C -0.14 -1.77 9.20 37.16 0.34 -1.42 16 21 C -0.10 -1.34 4.45 -26.69 -0.12 -1.46 16 22 C -0.11 -1.56 2.87 -90.54 -0.26 -1.82 16 23 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 24 C -0.14 -1.61 9.20 37.16 0.34 -1.27 16 25 C 0.13 2.02 5.62 -3.74 -0.02 2.00 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.04 0.99 8.06 -51.93 -0.42 0.58 16 32 H 0.03 0.72 8.06 -51.93 -0.42 0.30 16 33 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.03 0.67 7.87 -51.93 -0.41 0.26 16 35 H 0.10 2.56 5.85 -51.93 -0.30 2.25 16 36 H 0.08 1.73 7.01 -51.93 -0.36 1.36 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.08 1.32 5.93 -51.93 -0.31 1.01 16 LS Contribution 363.79 15.07 5.48 5.48 Total: -1.00 -31.47 363.79 -8.93 -40.40 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -8.96 Total: -0.14 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -0.13 Total: 4.94 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.37 Total: -52.44 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.09 Total: -15.17 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.04 Total: 16.93 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.47 -8.93 -40.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122991200.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.575 kcal (2) G-P(sol) polarization free energy of solvation -31.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds