Wall clock time and date at job start Tue Mar 31 2020 06:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47391 * 2 1 4 4 N 1.46500 * 109.47356 * 179.97438 * 3 2 1 5 5 C 1.36936 * 120.00168 * 274.35255 * 4 3 2 6 6 H 1.08008 * 119.99552 * 337.78226 * 5 4 3 7 7 C 1.38805 * 120.00507 * 157.78446 * 5 4 3 8 8 N 1.31628 * 119.99606 * 7.74026 * 7 5 4 9 9 Si 1.86794 * 120.00517 * 187.73515 * 7 5 4 10 10 H 1.48505 * 109.46933 * 89.99903 * 9 7 5 11 11 H 1.48500 * 109.47410 * 210.00306 * 9 7 5 12 12 H 1.48504 * 109.47237 * 330.00324 * 9 7 5 13 13 C 1.46495 * 120.00010 * 94.34962 * 4 3 2 14 14 C 1.50702 * 109.47162 * 270.00074 * 13 4 3 15 15 O 1.21284 * 120.00189 * 359.97438 * 14 13 4 16 16 N 1.34775 * 120.00331 * 179.97438 * 14 13 4 17 17 C 1.46928 * 120.62874 * 0.02562 * 16 14 13 18 18 C 1.53186 * 108.77779 * 233.58587 * 17 16 14 19 19 H 1.09003 * 109.52787 * 65.32999 * 18 17 16 20 20 C 1.53000 * 109.50079 * 185.41356 * 18 17 16 21 21 C 1.53044 * 109.31518 * 305.36822 * 18 17 16 22 22 C 1.53040 * 109.54041 * 61.36046 * 21 18 17 23 23 H 1.08993 * 109.49919 * 178.68665 * 22 21 18 24 24 C 1.53004 * 109.49632 * 58.62190 * 22 21 18 25 25 C 1.46926 * 120.63402 * 179.97438 * 16 14 13 26 26 H 1.09005 * 109.46741 * 59.99982 * 1 2 3 27 27 H 1.09004 * 109.46876 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47384 * 300.00176 * 1 2 3 29 29 H 1.09003 * 109.47122 * 240.00119 * 2 1 3 30 30 H 1.09005 * 109.46741 * 120.00018 * 2 1 3 31 31 H 1.09003 * 109.46890 * 59.99977 * 3 2 1 32 32 H 1.08997 * 109.47147 * 300.00391 * 3 2 1 33 33 H 0.96994 * 119.99679 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.47130 * 150.00154 * 13 4 3 35 35 H 1.09001 * 109.47051 * 29.99335 * 13 4 3 36 36 H 1.08999 * 109.58753 * 113.79690 * 17 16 14 37 37 H 1.09007 * 109.58574 * 353.37480 * 17 16 14 38 38 H 1.08998 * 109.47017 * 179.83546 * 20 18 17 39 39 H 1.08997 * 109.47065 * 59.83731 * 20 18 17 40 40 H 1.08999 * 109.47021 * 299.83601 * 20 18 17 41 41 H 1.08994 * 109.46666 * 181.38742 * 21 18 17 42 42 H 1.09002 * 109.45480 * 301.34219 * 21 18 17 43 43 H 1.08998 * 109.47018 * 59.99764 * 24 22 21 44 44 H 1.09000 * 109.46930 * 180.02562 * 24 22 21 45 45 H 1.08995 * 109.46757 * 300.00354 * 24 22 21 46 46 H 1.08999 * 109.58792 * 6.62647 * 25 16 14 47 47 H 1.08997 * 109.58780 * 246.20544 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1893 1.3526 1.1834 6 1 3.7089 1.6371 2.1080 7 6 5.5000 0.8961 1.1941 8 7 6.1360 0.6945 0.0594 9 14 6.3616 0.5677 2.8186 10 1 6.1296 -0.8413 3.2260 11 1 7.8193 0.8043 2.6626 12 1 5.8208 1.4792 3.8589 13 6 4.2381 1.5385 -1.2641 14 6 4.4894 0.1547 -1.8054 15 8 4.0955 -0.8163 -1.1945 16 7 5.1520 -0.0041 -2.9682 17 6 5.6358 1.1623 -3.7194 18 6 5.1115 1.0757 -5.1561 19 1 4.0251 1.1645 -5.1534 20 6 5.7143 2.2088 -5.9889 21 6 5.5123 -0.2718 -5.7609 22 6 4.8828 -1.4053 -4.9478 23 1 5.1495 -2.3638 -5.3929 24 6 3.3608 -1.2487 -4.9466 25 6 5.4052 -1.3468 -3.5084 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 7.0520 0.3759 0.0668 34 1 5.1904 2.0409 -1.0949 35 1 3.6492 2.1082 -1.9830 36 1 6.7258 1.1651 -3.7277 37 1 5.2697 2.0760 -3.2511 38 1 5.3432 2.1450 -7.0118 39 1 6.8007 2.1203 -5.9904 40 1 5.4285 3.1683 -5.5579 41 1 5.1617 -0.3260 -6.7915 42 1 6.5977 -0.3701 -5.7412 43 1 2.9908 -1.2877 -5.9711 44 1 2.9130 -2.0559 -4.3671 45 1 3.0946 -0.2905 -4.5005 46 1 4.8868 -2.0888 -2.9010 47 1 6.4763 -1.5483 -3.4995 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122991417.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:20 Heat of formation + Delta-G solvation = -25.565008 kcal Electronic energy + Delta-G solvation = -24700.328823 eV Core-core repulsion = 21497.386126 eV Total energy + Delta-G solvation = -3202.942697 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.47561 -37.20743 -35.32666 -33.08997 -32.74250 -32.58702 -30.45524 -27.62455 -26.50827 -26.14057 -25.42179 -24.42937 -22.10172 -21.13629 -20.06243 -19.18421 -17.96456 -16.68158 -15.91364 -15.19348 -15.02385 -14.54835 -14.37077 -14.13589 -13.78534 -13.58413 -13.40723 -12.96337 -12.80656 -12.64964 -12.42389 -12.00009 -11.84602 -11.78576 -11.40177 -11.28702 -11.24814 -11.03284 -10.90420 -10.73319 -10.70281 -10.48583 -10.47156 -10.22461 -10.13066 -9.98691 -9.91628 -9.77085 -9.49645 -8.67198 -8.10960 -7.51265 -6.71344 -5.73760 -3.12600 3.43170 3.49415 3.51169 4.07226 4.34450 4.59885 4.88150 5.00814 5.07947 5.26961 5.42847 5.45719 5.59132 5.61401 5.76200 5.78440 5.82893 5.87342 5.89324 5.91122 5.95955 6.03919 6.14511 6.20267 6.22474 6.28987 6.32361 6.35581 6.36173 6.38227 6.48986 6.57797 6.62096 6.66612 6.69636 6.74761 6.93897 7.20165 7.38282 7.49902 7.64460 7.80584 8.41928 8.71531 9.26515 9.81599 9.97069 10.36050 11.33046 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015152 B = 0.006721 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.531262 B = 4165.340371 C = 5036.450615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.152 3.848 4 N -0.580 5.580 5 C -0.239 4.239 6 H 0.073 0.927 7 C 0.007 3.993 8 N -0.908 5.908 9 Si 0.908 3.092 10 H -0.289 1.289 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.168 3.832 14 C 0.538 3.462 15 O -0.538 6.538 16 N -0.624 5.624 17 C 0.129 3.871 18 C -0.112 4.112 19 H 0.074 0.926 20 C -0.144 4.144 21 C -0.104 4.104 22 C -0.106 4.106 23 H 0.069 0.931 24 C -0.140 4.140 25 C 0.122 3.878 26 H 0.042 0.958 27 H 0.040 0.960 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.040 0.960 32 H 0.034 0.966 33 H 0.252 0.748 34 H 0.117 0.883 35 H 0.021 0.979 36 H 0.054 0.946 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.045 0.955 44 H 0.050 0.950 45 H 0.060 0.940 46 H 0.082 0.918 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.551 1.401 -12.592 12.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.025 3.975 4 N -0.299 5.299 5 C -0.368 4.368 6 H 0.091 0.909 7 C -0.190 4.190 8 N -0.555 5.555 9 Si 0.739 3.261 10 H -0.217 1.217 11 H -0.220 1.220 12 H -0.207 1.207 13 C 0.038 3.962 14 C 0.327 3.673 15 O -0.413 6.413 16 N -0.361 5.361 17 C 0.004 3.996 18 C -0.132 4.132 19 H 0.093 0.907 20 C -0.201 4.201 21 C -0.141 4.141 22 C -0.126 4.126 23 H 0.087 0.913 24 C -0.197 4.197 25 C -0.002 4.002 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.135 0.865 35 H 0.039 0.961 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.101 0.899 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.626 0.871 -12.163 12.474 hybrid contribution 0.783 -0.583 0.739 1.224 sum -1.843 0.288 -11.424 11.576 Atomic orbital electron populations 1.21785 0.98307 1.00129 1.00341 1.22156 0.92292 1.00485 1.03104 1.20903 0.84495 0.93964 0.98105 1.43806 0.99592 1.84160 1.02361 1.19221 0.95224 1.36160 0.86183 0.90944 1.24912 0.97891 0.99293 0.96861 1.69661 1.11418 1.50729 1.23713 0.86196 0.78291 0.78305 0.83325 1.21667 1.21989 1.20749 1.20766 0.98279 0.91476 0.85714 1.21989 0.74295 0.94140 0.76838 1.90469 1.52171 1.42228 1.56426 1.48189 1.59738 1.04546 1.23625 1.21449 0.98241 0.89799 0.90099 1.21616 1.01015 0.94710 0.95821 0.90725 1.21763 1.00830 0.98246 0.99304 1.21548 1.00125 0.94288 0.98188 1.21505 0.96165 0.98199 0.96710 0.91310 1.21768 0.95070 1.02513 1.00337 1.21277 0.98988 0.87334 0.92574 0.93872 0.94048 0.93684 0.91610 0.92348 0.94138 0.94802 0.93668 0.86550 0.96076 0.92819 0.90089 0.92984 0.92742 0.92495 0.92571 0.92222 0.93630 0.93052 0.92080 0.89911 0.93487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.91 37.16 0.37 -2.09 16 2 C -0.14 -2.98 5.67 -26.73 -0.15 -3.14 16 3 C 0.15 3.28 5.72 -4.04 -0.02 3.26 16 4 N -0.58 -14.60 2.07 -174.61 -0.36 -14.96 16 5 C -0.24 -6.57 9.70 -15.06 -0.15 -6.72 16 6 H 0.07 1.97 7.84 -52.48 -0.41 1.56 16 7 C 0.01 0.19 5.41 -17.43 -0.09 0.10 16 8 N -0.91 -25.39 8.21 55.49 0.46 -24.94 16 9 Si 0.91 22.50 29.56 -169.99 -5.02 17.48 16 10 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.17 3.93 3.81 -5.19 -0.02 3.91 16 14 C 0.54 12.68 5.66 -10.99 -0.06 12.62 16 15 O -0.54 -14.77 13.30 5.55 0.07 -14.69 16 16 N -0.62 -12.05 2.41 -172.74 -0.42 -12.47 16 17 C 0.13 2.04 5.63 -3.71 -0.02 2.01 16 18 C -0.11 -1.42 2.53 -90.50 -0.23 -1.64 16 19 H 0.07 0.99 6.34 -51.93 -0.33 0.66 16 20 C -0.14 -1.48 9.20 37.16 0.34 -1.13 16 21 C -0.10 -1.25 4.71 -26.69 -0.13 -1.38 16 22 C -0.11 -1.46 3.21 -90.47 -0.29 -1.75 16 23 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 24 C -0.14 -1.95 8.71 37.16 0.32 -1.63 16 25 C 0.12 2.16 5.83 -3.68 -0.02 2.13 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.55 6.39 -51.93 -0.33 1.21 16 30 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.03 0.66 7.84 -51.93 -0.41 0.26 16 33 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.12 2.95 6.05 -51.93 -0.31 2.64 16 35 H 0.02 0.45 7.41 -51.93 -0.38 0.06 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 1.31 5.93 -51.93 -0.31 1.00 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.95 5.98 -51.93 -0.31 0.64 16 46 H 0.08 1.67 7.01 -51.93 -0.36 1.31 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 353.71 15.07 5.33 5.33 Total: -1.00 -30.57 353.71 -8.73 -39.29 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -8.63 Total: 0.40 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -0.15 Total: 4.56 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: -0.32 Total: -52.37 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.07 Total: -14.69 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.57 -8.73 -39.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122991417.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.727 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds