Wall clock time and date at job start Tue Mar 31 2020 06:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47623 * 2 1 4 4 N 1.46496 * 109.47720 * 180.02562 * 3 2 1 5 5 C 1.36945 * 119.99414 * 274.98196 * 4 3 2 6 6 H 1.07992 * 120.00289 * 339.33179 * 5 4 3 7 7 C 1.38817 * 119.99369 * 159.33304 * 5 4 3 8 8 N 1.31618 * 120.00437 * 5.44378 * 7 5 4 9 9 Si 1.86803 * 119.99533 * 185.44342 * 7 5 4 10 10 H 1.48504 * 109.47403 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47026 * 119.99912 * 9 7 5 12 12 H 1.48495 * 109.47199 * 239.99792 * 9 7 5 13 13 C 1.46500 * 120.00361 * 94.97786 * 4 3 2 14 14 C 1.50699 * 109.47028 * 270.00093 * 13 4 3 15 15 O 1.21278 * 120.00129 * 2.44138 * 14 13 4 16 16 N 1.34777 * 119.99643 * 182.43784 * 14 13 4 17 17 C 1.46501 * 120.00308 * 6.56061 * 16 14 13 18 18 C 1.52993 * 109.47014 * 259.66706 * 17 16 14 19 19 C 1.53002 * 109.47339 * 65.25276 * 18 17 16 20 20 C 1.53004 * 109.47100 * 185.24907 * 18 17 16 21 21 C 1.46501 * 119.99697 * 186.55851 * 16 14 13 22 22 C 1.52999 * 117.50049 * 16.13899 * 21 16 14 23 23 C 1.52996 * 59.99969 * 252.50516 * 22 21 16 24 24 H 1.09006 * 109.47501 * 300.00381 * 1 2 3 25 25 H 1.09004 * 109.46994 * 59.99815 * 1 2 3 26 26 H 1.08995 * 109.47416 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47469 * 239.99024 * 2 1 3 28 28 H 1.09010 * 109.46888 * 119.99749 * 2 1 3 29 29 H 1.09007 * 109.47515 * 59.99244 * 3 2 1 30 30 H 1.09004 * 109.47086 * 300.00128 * 3 2 1 31 31 H 0.96998 * 119.99746 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47092 * 150.00255 * 13 4 3 33 33 H 1.08998 * 109.46857 * 30.00501 * 13 4 3 34 34 H 1.09001 * 109.46615 * 19.66816 * 17 16 14 35 35 H 1.08997 * 109.47200 * 139.66440 * 17 16 14 36 36 H 1.09005 * 109.47338 * 305.24910 * 18 17 16 37 37 H 1.08999 * 109.47025 * 64.00977 * 19 18 17 38 38 H 1.09003 * 109.47230 * 184.00871 * 19 18 17 39 39 H 1.08998 * 109.46897 * 304.00587 * 19 18 17 40 40 H 1.09002 * 109.47105 * 59.99979 * 20 18 17 41 41 H 1.08998 * 109.47111 * 180.02562 * 20 18 17 42 42 H 1.09005 * 109.47028 * 300.00193 * 20 18 17 43 43 H 1.09005 * 115.55002 * 161.84319 * 21 16 14 44 44 H 1.09006 * 117.49763 * 359.97438 * 22 21 16 45 45 H 1.09006 * 117.49986 * 145.01808 * 22 21 16 46 46 H 1.08998 * 117.50016 * 252.50993 * 23 22 21 47 47 H 1.09003 * 117.51665 * 107.47762 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1901 1.3393 1.1806 6 1 3.7026 1.5894 2.1113 7 6 5.5113 0.9132 1.1817 8 7 6.1386 0.7113 0.0424 9 14 6.3987 0.6264 2.8002 10 1 5.4791 0.9219 3.9282 11 1 6.8391 -0.7897 2.8792 12 1 7.5833 1.5183 2.8800 13 6 4.2370 1.5527 -1.2648 14 6 4.4880 0.1751 -1.8218 15 8 4.0559 -0.8002 -1.2448 16 7 5.1926 0.0270 -2.9611 17 6 5.8362 1.1881 -3.5806 18 6 4.9768 1.6873 -4.7437 19 6 3.6434 2.2099 -4.2052 20 6 5.7099 2.8156 -5.4721 21 6 5.3150 -1.2952 -3.5800 22 6 4.3378 -2.3812 -3.1254 23 6 5.8055 -2.4454 -2.6983 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5140 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 7.0617 0.4133 0.0432 32 1 5.1895 2.0532 -1.0906 33 1 3.6477 2.1307 -1.9766 34 1 5.9432 1.9817 -2.8411 35 1 6.8203 0.9028 -3.9523 36 1 4.7921 0.8669 -5.4373 37 1 3.8233 3.0754 -3.5675 38 1 3.0033 2.4994 -5.0386 39 1 3.1538 1.4271 -3.6259 40 1 6.6598 2.4434 -5.8558 41 1 5.0974 3.1715 -6.3005 42 1 5.8946 3.6360 -4.7785 43 1 5.6198 -1.2981 -4.6265 44 1 3.6041 -2.1120 -2.3655 45 1 3.9993 -3.0987 -3.8730 46 1 6.4327 -3.2050 -3.1648 47 1 6.0376 -2.2182 -1.6578 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123044465.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:17 Heat of formation + Delta-G solvation = 21.254123 kcal Electronic energy + Delta-G solvation = -24959.387109 eV Core-core repulsion = 21758.474642 eV Total energy + Delta-G solvation = -3200.912467 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.34949 -36.35776 -35.97569 -34.62591 -32.81618 -31.94407 -30.45085 -27.55144 -26.50528 -25.43915 -25.33469 -22.66570 -21.65313 -21.35151 -20.03681 -19.95157 -17.99129 -16.62902 -16.31241 -15.35625 -15.03195 -14.45087 -14.19393 -14.10244 -13.83308 -13.54542 -13.11490 -12.88213 -12.78923 -12.47763 -12.32097 -12.00305 -11.78907 -11.59132 -11.45951 -11.24177 -11.03192 -10.90032 -10.76591 -10.72302 -10.53756 -10.44741 -10.34102 -10.17063 -10.12600 -9.80530 -9.77354 -9.66855 -9.48314 -8.62515 -7.92245 -7.33079 -6.72342 -5.74190 -3.13574 3.40514 3.48981 3.49753 3.93111 4.19597 4.53958 4.72024 5.11621 5.21959 5.31637 5.42289 5.51811 5.54765 5.59771 5.74875 5.78804 5.86372 5.87134 5.91251 5.91852 6.07775 6.12645 6.20616 6.21601 6.27636 6.30565 6.31439 6.32273 6.45909 6.52737 6.61023 6.64159 6.67138 6.73500 6.83048 6.92641 7.13039 7.19471 7.39964 7.50843 7.77698 7.78770 8.39760 8.67974 9.24991 9.79700 9.94722 10.33627 11.31433 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012302 B = 0.007697 C = 0.006833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.422579 B = 3637.032700 C = 4096.940109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.152 3.848 4 N -0.580 5.580 5 C -0.234 4.234 6 H 0.073 0.927 7 C 0.004 3.996 8 N -0.910 5.910 9 Si 0.908 3.092 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.293 1.293 13 C 0.156 3.844 14 C 0.541 3.459 15 O -0.531 6.531 16 N -0.597 5.597 17 C 0.128 3.872 18 C -0.115 4.115 19 C -0.147 4.147 20 C -0.144 4.144 21 C 0.082 3.918 22 C -0.197 4.197 23 C -0.190 4.190 24 H 0.043 0.957 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.039 0.961 30 H 0.034 0.966 31 H 0.252 0.748 32 H 0.116 0.884 33 H 0.038 0.962 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.045 0.955 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.107 0.893 44 H 0.138 0.862 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.590 2.308 -10.635 11.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.025 3.975 4 N -0.299 5.299 5 C -0.363 4.363 6 H 0.091 0.909 7 C -0.192 4.192 8 N -0.558 5.558 9 Si 0.739 3.261 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.220 1.220 13 C 0.026 3.974 14 C 0.332 3.668 15 O -0.407 6.407 16 N -0.331 5.331 17 C 0.004 3.996 18 C -0.134 4.134 19 C -0.204 4.204 20 C -0.202 4.202 21 C -0.024 4.024 22 C -0.235 4.235 23 C -0.229 4.229 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.133 0.867 33 H 0.055 0.945 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.124 0.876 44 H 0.155 0.845 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.684 1.805 -10.239 10.738 hybrid contribution 0.864 -0.640 0.719 1.293 sum -1.820 1.166 -9.520 9.762 Atomic orbital electron populations 1.21787 0.98343 1.00140 1.00331 1.22170 0.92278 1.00461 1.03167 1.20895 0.84492 0.93993 0.98080 1.43857 0.99598 1.83921 1.02559 1.19300 0.94335 1.36688 0.85998 0.90926 1.24863 0.97809 0.99699 0.96830 1.69655 1.11158 1.51783 1.23240 0.86117 0.79182 0.77536 0.83248 1.20623 1.21888 1.22044 1.21155 0.98611 0.91608 0.86020 1.22036 0.74421 0.94140 0.76251 1.90305 1.52561 1.40985 1.56804 1.47507 1.54454 1.05108 1.26070 1.21417 0.94299 0.89081 0.94791 1.21587 0.96347 0.97776 0.97735 1.21989 0.96574 1.01368 1.00482 1.21777 0.99856 0.98508 1.00010 1.21338 1.04924 0.81276 0.94854 1.23762 0.95537 0.99884 1.04300 1.23157 0.96953 1.00839 1.01999 0.93737 0.93860 0.94036 0.91396 0.92403 0.94235 0.94785 0.93726 0.86668 0.94481 0.89363 0.92334 0.91657 0.92224 0.93582 0.92033 0.92951 0.93006 0.92423 0.87567 0.84497 0.91064 0.90517 0.88003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.91 37.15 0.37 -2.06 16 2 C -0.14 -2.92 5.67 -26.74 -0.15 -3.08 16 3 C 0.15 3.22 5.72 -4.05 -0.02 3.19 16 4 N -0.58 -14.22 2.08 -174.61 -0.36 -14.58 16 5 C -0.23 -6.32 9.72 -15.05 -0.15 -6.46 16 6 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 7 C 0.00 0.11 5.39 -17.43 -0.09 0.01 16 8 N -0.91 -24.75 8.27 55.49 0.46 -24.29 16 9 Si 0.91 22.24 29.56 -169.99 -5.02 17.22 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 C 0.16 3.52 3.91 -5.19 -0.02 3.50 16 14 C 0.54 12.24 4.41 -10.99 -0.05 12.19 16 15 O -0.53 -13.64 9.64 5.56 0.05 -13.59 16 16 N -0.60 -11.40 2.55 -166.11 -0.42 -11.83 16 17 C 0.13 2.04 4.92 -4.04 -0.02 2.02 16 18 C -0.11 -1.49 3.07 -90.62 -0.28 -1.77 16 19 C -0.15 -2.02 7.57 37.16 0.28 -1.74 16 20 C -0.14 -1.53 9.19 37.16 0.34 -1.19 16 21 C 0.08 1.46 6.59 -67.93 -0.45 1.01 16 22 C -0.20 -3.67 9.63 -26.73 -0.26 -3.93 16 23 C -0.19 -3.63 9.88 -26.73 -0.26 -3.90 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 1.55 6.26 -51.93 -0.32 1.22 16 28 H 0.06 1.35 8.14 -51.92 -0.42 0.93 16 29 H 0.04 0.81 8.08 -51.93 -0.42 0.39 16 30 H 0.03 0.65 7.84 -51.93 -0.41 0.25 16 31 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.12 2.85 5.13 -51.93 -0.27 2.58 16 33 H 0.04 0.75 4.13 -51.93 -0.21 0.54 16 34 H 0.09 1.53 6.05 -51.93 -0.31 1.21 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.82 7.17 -51.93 -0.37 0.45 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 1.00 5.92 -51.93 -0.31 0.69 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 44 H 0.14 3.04 5.22 -52.09 -0.27 2.77 16 45 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.10 2.39 7.60 -51.93 -0.39 2.00 16 LS Contribution 354.36 15.07 5.34 5.34 Total: -1.00 -29.14 354.36 -9.05 -38.20 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -8.33 Total: 5.72 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -0.76 Total: -2.19 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.33 Total: -50.70 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.05 Total: -13.59 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.14 -9.05 -38.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123044465.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.452 kcal (2) G-P(sol) polarization free energy of solvation -29.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds