Wall clock time and date at job start Tue Mar 31 2020 05:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46918 * 2 1 4 4 H 1.09002 * 110.36536 * 308.61072 * 3 2 1 5 5 C 1.54376 * 110.40779 * 186.26032 * 3 2 1 6 6 C 1.54257 * 105.06243 * 217.36762 * 5 3 2 7 7 C 1.54381 * 105.05973 * 0.02562 * 6 5 3 8 8 H 1.08990 * 110.41604 * 264.95857 * 7 6 5 9 9 C 1.53006 * 110.41219 * 142.62806 * 7 6 5 10 10 N 1.48556 * 110.40981 * 70.96399 * 3 2 1 11 11 C 1.46901 * 111.00092 * 277.81374 * 10 3 2 12 12 C 1.52996 * 109.47210 * 306.82006 * 11 10 3 13 13 C 1.50702 * 109.47440 * 183.37520 * 12 11 10 14 14 O 1.21284 * 119.99725 * 359.97438 * 13 12 11 15 15 N 1.34770 * 120.00314 * 180.02562 * 13 12 11 16 16 C 1.46501 * 119.99945 * 359.97438 * 15 13 12 17 17 C 1.46496 * 120.00159 * 179.97438 * 15 13 12 18 18 C 1.50701 * 109.47493 * 89.99364 * 17 15 13 19 19 H 1.08001 * 119.99651 * 0.02562 * 18 17 15 20 20 C 1.37874 * 120.00276 * 179.97438 * 18 17 15 21 21 N 1.31518 * 120.00251 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00148 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46505 * 90.00556 * 22 20 18 24 24 H 1.48494 * 109.47624 * 210.00424 * 22 20 18 25 25 H 1.48498 * 109.46956 * 330.00738 * 22 20 18 26 26 H 1.08998 * 109.47345 * 41.34036 * 1 2 3 27 27 H 1.09004 * 109.46842 * 281.34284 * 1 2 3 28 28 H 1.08991 * 109.47329 * 161.34256 * 1 2 3 29 29 H 1.09000 * 109.46998 * 119.99731 * 2 1 3 30 30 H 1.08995 * 109.47055 * 240.00086 * 2 1 3 31 31 H 1.08997 * 110.32951 * 336.26531 * 5 3 2 32 32 H 1.09004 * 110.32118 * 98.47401 * 5 3 2 33 33 H 1.09001 * 110.32534 * 118.89751 * 6 5 3 34 34 H 1.09005 * 110.32546 * 241.10666 * 6 5 3 35 35 H 1.08996 * 109.46641 * 59.30483 * 9 7 6 36 36 H 1.08997 * 109.47064 * 179.29977 * 9 7 6 37 37 H 1.08998 * 109.47102 * 299.30365 * 9 7 6 38 38 H 1.09004 * 109.46840 * 66.81815 * 11 10 3 39 39 H 1.08997 * 109.46899 * 186.81841 * 11 10 3 40 40 H 1.09002 * 109.47017 * 303.37357 * 12 11 10 41 41 H 1.08995 * 109.47350 * 63.37352 * 12 11 10 42 42 H 1.08994 * 109.46856 * 90.00594 * 16 15 13 43 43 H 1.09003 * 109.47032 * 210.00540 * 16 15 13 44 44 H 1.08998 * 109.46981 * 330.00478 * 16 15 13 45 45 H 1.09000 * 109.47635 * 209.99764 * 17 15 13 46 46 H 1.09004 * 109.47118 * 329.99415 * 17 15 13 47 47 H 0.96997 * 120.00453 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5652 2.0127 -0.7985 5 6 3.5754 1.4707 -0.1578 6 6 4.0500 2.6280 0.7449 7 6 2.7614 3.2014 1.3728 8 1 2.4003 4.0499 0.7917 9 6 3.0141 3.6181 2.8231 10 7 1.7845 2.0824 1.3162 11 6 0.4048 2.5795 1.4009 12 6 0.1135 3.4826 0.2008 13 6 -1.2731 4.0586 0.3303 14 8 -1.9608 3.7743 1.2880 15 7 -1.7493 4.8887 -0.6186 16 6 -0.9189 5.2316 -1.7758 17 6 -3.0974 5.4482 -0.4930 18 6 -3.0320 6.7526 0.2588 19 1 -2.0811 7.1277 0.6077 20 6 -4.1857 7.4679 0.5002 21 7 -5.3435 7.0115 0.0750 22 14 -4.1046 9.0845 1.4327 23 1 -3.9096 10.2004 0.4724 24 1 -5.3718 9.2895 2.1792 25 1 -2.9678 9.0487 2.3875 26 1 -0.3634 0.7715 -0.6788 27 1 -0.3633 0.2021 1.0076 28 1 -0.3633 -0.9736 -0.3287 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 4.0078 0.5278 0.1769 32 1 3.8458 1.6649 -1.1957 33 1 4.7153 2.2532 1.5228 34 1 4.5533 3.3903 0.1501 35 1 3.8011 4.3716 2.8527 36 1 2.0990 4.0316 3.2471 37 1 3.3222 2.7479 3.4027 38 1 -0.2860 1.7363 1.3973 39 1 0.2795 3.1480 2.3224 40 1 0.8420 4.2927 0.1704 41 1 0.1802 2.8993 -0.7176 42 1 -1.0948 4.5119 -2.5752 43 1 -1.1764 6.2318 -2.1242 44 1 0.1323 5.2062 -1.4888 45 1 -3.5130 5.6213 -1.4856 46 1 -3.7324 4.7477 0.0496 47 1 -6.1552 7.5144 0.2452 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124641002.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:06 Heat of formation + Delta-G solvation = -37.766614 kcal Electronic energy + Delta-G solvation = -23642.078253 eV Core-core repulsion = 20438.606455 eV Total energy + Delta-G solvation = -3203.471798 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.15601 -38.62078 -34.84491 -34.02100 -33.32082 -32.55369 -30.24187 -29.25998 -27.52556 -25.99140 -25.62090 -23.96292 -22.56539 -21.97624 -20.52557 -19.67600 -18.20950 -16.98422 -16.52971 -15.64848 -15.40300 -15.25271 -15.12301 -14.76148 -14.26792 -13.75522 -13.62316 -13.28440 -13.05986 -12.90721 -12.51325 -12.38928 -12.18393 -12.08765 -11.98023 -11.88291 -11.79821 -11.43971 -11.35380 -11.19099 -11.12679 -10.89309 -10.82632 -10.62286 -10.57074 -10.48631 -10.15984 -10.00122 -9.62840 -8.88709 -8.44695 -8.39211 -7.63825 -6.04396 -4.09250 3.29481 3.36038 3.39167 3.45622 3.85278 4.04468 4.43196 4.46858 4.60188 4.82127 4.91601 5.10617 5.15497 5.17830 5.22519 5.27422 5.31071 5.35145 5.42686 5.46523 5.57295 5.58919 5.68195 5.69395 5.76832 5.82303 5.88649 5.90839 5.94594 5.95622 6.04527 6.08841 6.17940 6.21836 6.23580 6.29070 6.54462 6.94541 7.03448 7.10932 7.44511 7.54472 7.91931 8.23519 8.42656 8.90213 9.10843 9.55940 11.03706 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022403 B = 0.004132 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.553542 B = 6774.257426 C = 7294.853200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.106 4.106 3 C 0.051 3.949 4 H 0.060 0.940 5 C -0.120 4.120 6 C -0.120 4.120 7 C 0.049 3.951 8 H 0.057 0.943 9 C -0.136 4.136 10 N -0.496 5.496 11 C 0.049 3.951 12 C -0.180 4.180 13 C 0.507 3.493 14 O -0.541 6.541 15 N -0.604 5.604 16 C 0.085 3.915 17 C 0.245 3.755 18 C -0.526 4.526 19 H 0.056 0.944 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.898 3.102 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.073 0.927 44 H 0.054 0.946 45 H 0.031 0.969 46 H 0.044 0.956 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.647 -10.811 -2.893 21.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.144 4.144 3 C -0.057 4.057 4 H 0.078 0.922 5 C -0.158 4.158 6 C -0.158 4.158 7 C -0.059 4.059 8 H 0.075 0.925 9 C -0.194 4.194 10 N -0.220 5.220 11 C -0.079 4.079 12 C -0.221 4.221 13 C 0.293 3.707 14 O -0.419 6.419 15 N -0.336 5.336 16 C -0.059 4.059 17 C 0.125 3.875 18 C -0.565 4.565 19 H 0.074 0.926 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.726 3.274 23 H -0.206 1.206 24 H -0.210 1.210 25 H -0.199 1.199 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.049 0.951 46 H 0.062 0.938 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 18.130 -11.288 -1.942 21.445 hybrid contribution -0.207 1.737 -0.385 1.791 sum 17.923 -9.551 -2.327 20.442 Atomic orbital electron populations 1.22009 0.95752 1.01301 1.02534 1.21448 0.95996 0.95075 1.01841 1.22871 0.95236 0.96001 0.91639 0.92174 1.22336 0.94907 0.99178 0.99418 1.22344 0.97011 0.97554 0.98856 1.22737 0.92431 0.93499 0.97231 0.92533 1.21699 1.01533 1.01042 0.95129 1.65620 1.03236 1.23357 1.29744 1.22360 0.89433 0.98779 0.97309 1.22409 0.96730 1.00971 1.01990 1.20206 0.87973 0.79549 0.82942 1.90667 1.59715 1.60596 1.30931 1.48178 1.18310 1.45750 1.21401 1.21605 0.94297 1.01306 0.88716 1.19279 0.76918 0.93918 0.97335 1.21424 0.93618 1.05290 1.36127 0.92572 1.24936 0.95175 0.98205 0.95780 1.69931 0.98120 1.38920 1.46431 0.86500 0.77609 0.83388 0.79952 1.20647 1.21031 1.19909 0.92859 0.91551 0.93058 0.91146 0.92014 0.91096 0.91641 0.91078 0.91651 0.92548 0.92450 0.91927 0.88606 0.89844 0.89581 0.89456 0.93876 0.90801 0.92740 0.95123 0.93836 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 8.57 37.16 0.32 -1.43 16 2 C -0.11 -1.03 5.52 -26.73 -0.15 -1.18 16 3 C 0.05 0.53 2.23 -66.07 -0.15 0.38 16 4 H 0.06 0.65 5.27 -51.93 -0.27 0.38 16 5 C -0.12 -1.04 6.55 -25.35 -0.17 -1.21 16 6 C -0.12 -1.07 6.55 -25.35 -0.17 -1.23 16 7 C 0.05 0.54 2.75 -66.01 -0.18 0.36 16 8 H 0.06 0.66 5.74 -51.93 -0.30 0.36 16 9 C -0.14 -1.46 9.31 37.16 0.35 -1.11 16 10 N -0.50 -5.97 5.01 -214.28 -1.07 -7.04 16 11 C 0.05 0.72 4.28 -3.83 -0.02 0.70 16 12 C -0.18 -2.69 3.46 -27.88 -0.10 -2.79 16 13 C 0.51 10.61 7.67 -10.99 -0.08 10.53 16 14 O -0.54 -13.68 15.53 5.55 0.09 -13.59 16 15 N -0.60 -13.01 2.86 -182.96 -0.52 -13.53 16 16 C 0.09 1.37 10.24 59.85 0.61 1.98 16 17 C 0.24 6.51 5.16 -5.19 -0.03 6.49 16 18 C -0.53 -15.12 9.39 -34.44 -0.32 -15.45 16 19 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 22 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 25 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 26 H 0.05 0.63 7.13 -51.93 -0.37 0.26 16 27 H 0.07 0.82 5.99 -51.93 -0.31 0.51 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.58 7.86 -51.93 -0.41 0.18 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.61 7.86 -51.93 -0.41 0.20 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.69 7.53 -51.93 -0.39 0.30 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 1.47 4.71 -51.93 -0.24 1.22 16 39 H 0.08 1.38 7.31 -51.93 -0.38 1.00 16 40 H 0.09 1.21 5.26 -51.93 -0.27 0.93 16 41 H 0.09 1.15 5.32 -51.93 -0.28 0.88 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 44 H 0.05 0.72 6.44 -51.93 -0.33 0.39 16 45 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 46 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 355.92 15.07 5.36 5.36 Total: -1.00 -32.38 355.92 -8.73 -41.11 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -8.12 Total: -0.93 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -0.18 Total: -2.29 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: -0.86 Total: -46.70 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.09 Total: -13.59 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.38 -8.73 -41.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124641002.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.341 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds