Wall clock time and date at job start Tue Mar 31 2020 05:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47381 * 2 1 4 4 H 1.09007 * 110.33125 * 54.20078 * 3 2 1 5 5 C 1.54905 * 110.37742 * 176.45431 * 3 2 1 6 6 C 1.55135 * 101.65615 * 156.01356 * 5 3 2 7 7 C 1.54325 * 103.01970 * 324.34708 * 6 5 3 8 8 H 1.08994 * 109.88439 * 262.71619 * 7 6 5 9 9 C 1.52992 * 109.89038 * 141.68738 * 7 6 5 10 10 N 1.47442 * 107.22957 * 22.28279 * 7 6 5 11 11 C 1.46902 * 110.99764 * 123.25786 * 10 7 6 12 12 C 1.53008 * 109.46826 * 81.01944 * 11 10 7 13 13 C 1.50703 * 109.46755 * 185.92765 * 12 11 10 14 14 O 1.21284 * 120.00299 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99527 * 179.97438 * 13 12 11 16 16 C 1.46493 * 120.00391 * 0.02562 * 15 13 12 17 17 C 1.46506 * 119.99901 * 180.02562 * 15 13 12 18 18 C 1.50701 * 109.47171 * 89.99813 * 17 15 13 19 19 H 1.07996 * 119.99710 * 0.02562 * 18 17 15 20 20 C 1.37880 * 119.99833 * 180.02562 * 18 17 15 21 21 N 1.31515 * 120.00019 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99852 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47209 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47115 * 120.00351 * 22 20 18 25 25 H 1.48495 * 109.47306 * 240.00347 * 22 20 18 26 26 H 1.09011 * 109.46808 * 59.99869 * 1 2 3 27 27 H 1.08997 * 109.47394 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.46971 * 300.00168 * 1 2 3 29 29 H 1.09001 * 109.46932 * 240.00571 * 2 1 3 30 30 H 1.08996 * 109.47253 * 120.00279 * 2 1 3 31 31 H 1.08997 * 110.99117 * 37.91789 * 5 3 2 32 32 H 1.09008 * 110.98673 * 274.10689 * 5 3 2 33 33 H 1.09000 * 110.70743 * 205.96212 * 6 5 3 34 34 H 1.09000 * 110.70650 * 82.72648 * 6 5 3 35 35 H 1.09009 * 109.47119 * 64.85739 * 9 7 6 36 36 H 1.09003 * 109.47489 * 304.86085 * 9 7 6 37 37 H 1.08999 * 109.47326 * 184.86000 * 9 7 6 38 38 H 1.09005 * 109.47350 * 201.01602 * 11 10 7 39 39 H 1.08990 * 109.47517 * 321.01784 * 11 10 7 40 40 H 1.08991 * 109.46937 * 305.92874 * 12 11 10 41 41 H 1.08996 * 109.46865 * 65.93422 * 12 11 10 42 42 H 1.09006 * 109.47183 * 89.99893 * 16 15 13 43 43 H 1.09002 * 109.47615 * 209.99450 * 16 15 13 44 44 H 1.08998 * 109.47394 * 329.99800 * 16 15 13 45 45 H 1.08999 * 109.47451 * 210.00555 * 17 15 13 46 46 H 1.09010 * 109.47047 * 330.00237 * 17 15 13 47 47 H 0.96998 * 119.99949 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6026 1.9989 0.8290 5 6 3.5863 1.4678 0.0898 6 6 3.9142 2.8479 -0.5384 7 6 2.8478 2.9883 -1.6451 8 1 3.2678 2.6878 -2.6049 9 6 2.3631 4.4375 -1.7200 10 7 1.7257 2.1021 -1.2853 11 6 0.4676 2.8552 -1.1966 12 6 -0.1060 3.0572 -2.6007 13 6 -1.3163 3.9519 -2.5249 14 8 -1.6837 4.3857 -1.4536 15 7 -1.9898 4.2708 -3.6479 16 6 -1.5457 3.7472 -4.9421 17 6 -3.1661 5.1410 -3.5745 18 6 -2.7379 6.5781 -3.7246 19 1 -1.6941 6.8190 -3.8615 20 6 -3.6788 7.5853 -3.6872 21 7 -4.9499 7.2918 -3.5200 22 14 -3.1482 9.3665 -3.8740 23 1 -1.6748 9.4284 -4.0488 24 1 -3.8126 9.9589 -5.0627 25 1 -3.5354 10.1283 -2.6596 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 4.0247 0.6588 -0.4944 32 1 3.9179 1.4223 1.1272 33 1 4.9165 2.8480 -0.9667 34 1 3.8096 3.6423 0.2006 35 1 3.1864 5.0803 -2.0316 36 1 2.0071 4.7528 -0.7391 37 1 1.5504 4.5119 -2.4425 38 1 -0.2466 2.2995 -0.5889 39 1 0.6567 3.8259 -0.7383 40 1 0.6480 3.5189 -3.2381 41 1 -0.3932 2.0921 -3.0180 42 1 -2.0370 2.7937 -5.1362 43 1 -1.8043 4.4559 -5.7289 44 1 -0.4656 3.6024 -4.9242 45 1 -3.8596 4.8830 -4.3748 46 1 -3.6575 5.0071 -2.6107 47 1 -5.6118 8.0004 -3.4933 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124641238.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:09 Heat of formation + Delta-G solvation = -32.045961 kcal Electronic energy + Delta-G solvation = -23528.664984 eV Core-core repulsion = 20325.441252 eV Total energy + Delta-G solvation = -3203.223732 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.12264 -38.67520 -34.81007 -34.19730 -33.27924 -32.53322 -29.88000 -29.44679 -27.53197 -25.83241 -25.70081 -23.98477 -22.44798 -21.81415 -20.75780 -19.15172 -18.22875 -16.74265 -16.54941 -16.45791 -15.40778 -15.31979 -15.07616 -14.24395 -14.14230 -13.78192 -13.61788 -13.33170 -13.26329 -12.72347 -12.64878 -12.29598 -12.15629 -12.05524 -12.00161 -11.73915 -11.56892 -11.33153 -11.22746 -11.09910 -11.02925 -10.86210 -10.76184 -10.61275 -10.55374 -10.50539 -10.24247 -10.14244 -9.58457 -8.83007 -8.42413 -8.21907 -7.58982 -6.02797 -4.07345 3.30076 3.37263 3.40844 3.51926 3.73064 4.19462 4.45900 4.49599 4.55747 4.79901 4.99838 5.13299 5.22051 5.25631 5.28525 5.30969 5.34703 5.40581 5.46232 5.50239 5.55145 5.62791 5.69567 5.70898 5.81456 5.86280 5.95092 5.95902 5.97485 6.01076 6.04830 6.11179 6.23246 6.27337 6.28890 6.37039 6.47270 7.06699 7.11804 7.15696 7.47692 7.58768 7.94111 8.25958 8.47888 8.92958 9.15589 9.57796 11.05302 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023127 B = 0.003995 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.412036 B = 7007.773852 C = 7553.436466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.104 4.104 3 C 0.071 3.929 4 H 0.054 0.946 5 C -0.124 4.124 6 C -0.139 4.139 7 C 0.070 3.930 8 H 0.083 0.917 9 C -0.181 4.181 10 N -0.521 5.521 11 C 0.048 3.952 12 C -0.135 4.135 13 C 0.503 3.497 14 O -0.546 6.546 15 N -0.604 5.604 16 C 0.084 3.916 17 C 0.244 3.756 18 C -0.524 4.524 19 H 0.057 0.943 20 C 0.060 3.940 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.031 0.969 46 H 0.043 0.957 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.479 -13.621 3.139 21.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.142 4.142 3 C -0.037 4.037 4 H 0.072 0.928 5 C -0.163 4.163 6 C -0.177 4.177 7 C -0.038 4.038 8 H 0.101 0.899 9 C -0.239 4.239 10 N -0.246 5.246 11 C -0.080 4.080 12 C -0.175 4.175 13 C 0.289 3.711 14 O -0.424 6.424 15 N -0.336 5.336 16 C -0.060 4.060 17 C 0.125 3.875 18 C -0.563 4.563 19 H 0.075 0.925 20 C -0.142 4.142 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.003 -13.673 3.313 21.307 hybrid contribution 0.256 1.723 0.317 1.771 sum 16.258 -11.949 3.629 20.501 Atomic orbital electron populations 1.21884 0.95818 1.01318 1.02392 1.21433 0.96130 0.95078 1.01572 1.22594 0.94612 0.95573 0.90969 0.92771 1.22721 0.95238 0.97499 1.00796 1.22882 0.99264 0.97407 0.98177 1.22394 0.91077 0.91684 0.98680 0.89879 1.22574 1.02228 0.96050 1.03003 1.63582 1.02208 1.29175 1.29591 1.22283 0.90623 0.98612 0.96438 1.21773 0.96591 1.00244 0.98889 1.20390 0.84645 0.81663 0.84383 1.90656 1.68461 1.54884 1.28449 1.48158 1.30950 1.48863 1.05620 1.21626 0.98853 0.98611 0.86917 1.19278 0.81753 0.87955 0.98527 1.21476 0.93859 0.91242 1.49712 0.92481 1.24941 0.94817 0.99248 0.95163 1.69945 1.00563 1.32881 1.50033 0.86454 0.78677 0.84699 0.77660 1.19839 1.20959 1.20888 0.91467 0.93141 0.93166 0.91311 0.92220 0.90691 0.91177 0.91034 0.91434 0.92405 0.92124 0.90579 0.90106 0.91914 0.89081 0.89352 0.93788 0.90920 0.92412 0.95101 0.93895 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 8.77 37.16 0.33 -1.35 16 2 C -0.10 -1.01 5.65 -26.73 -0.15 -1.16 16 3 C 0.07 0.75 2.49 -66.19 -0.16 0.59 16 4 H 0.05 0.64 7.81 -51.92 -0.41 0.23 16 5 C -0.12 -1.10 6.49 -24.60 -0.16 -1.26 16 6 C -0.14 -1.29 6.47 -24.91 -0.16 -1.45 16 7 C 0.07 0.77 3.81 -66.73 -0.25 0.51 16 8 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 9 C -0.18 -2.24 7.64 37.15 0.28 -1.96 16 10 N -0.52 -6.25 4.62 -215.53 -1.00 -7.25 16 11 C 0.05 0.70 3.06 -3.82 -0.01 0.69 16 12 C -0.13 -2.06 3.83 -27.88 -0.11 -2.16 16 13 C 0.50 10.54 7.67 -10.98 -0.08 10.46 16 14 O -0.55 -13.81 15.48 5.55 0.09 -13.72 16 15 N -0.60 -13.04 2.86 -182.95 -0.52 -13.56 16 16 C 0.08 1.36 10.24 59.84 0.61 1.98 16 17 C 0.24 6.51 5.16 -5.19 -0.03 6.48 16 18 C -0.52 -15.07 9.39 -34.44 -0.32 -15.39 16 19 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 22 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 H 0.07 0.82 6.16 -51.92 -0.32 0.50 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.62 8.06 -51.93 -0.42 0.21 16 32 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.65 7.80 -51.93 -0.41 0.24 16 35 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 36 H 0.06 0.82 6.65 -51.93 -0.35 0.47 16 37 H 0.08 1.07 4.51 -51.93 -0.23 0.84 16 38 H 0.08 1.24 5.50 -51.93 -0.29 0.96 16 39 H 0.06 1.03 4.98 -51.93 -0.26 0.77 16 40 H 0.09 1.29 5.08 -51.93 -0.26 1.02 16 41 H 0.09 1.22 8.11 -51.93 -0.42 0.80 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 44 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 45 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 46 H 0.04 1.29 7.42 -51.92 -0.39 0.90 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 357.29 15.07 5.38 5.38 Total: -1.00 -32.35 357.29 -8.92 -41.26 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -8.27 Total: -0.63 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -0.32 Total: -2.37 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.78 Total: -46.97 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.09 Total: -13.72 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.35 -8.92 -41.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124641238.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.218 kcal (2) G-P(sol) polarization free energy of solvation -32.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds