Wall clock time and date at job start Tue Mar 31 2020 05:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47180 * 2 1 4 4 H 1.08997 * 110.33572 * 302.74933 * 3 2 1 5 5 C 1.54909 * 110.47164 * 180.42675 * 3 2 1 6 6 C 1.55142 * 101.65636 * 204.05163 * 5 3 2 7 7 C 1.54324 * 103.01734 * 35.65512 * 6 5 3 8 8 H 1.09004 * 109.88550 * 97.12123 * 7 6 5 9 9 C 1.53001 * 109.88654 * 218.30984 * 7 6 5 10 10 N 1.47444 * 107.23270 * 337.71703 * 7 6 5 11 11 C 1.46905 * 110.99832 * 236.74295 * 10 7 6 12 12 C 1.53002 * 109.46804 * 278.19090 * 11 10 7 13 13 C 1.50699 * 109.46651 * 173.67407 * 12 11 10 14 14 O 1.21280 * 120.00667 * 359.97438 * 13 12 11 15 15 N 1.34781 * 119.99653 * 180.02562 * 13 12 11 16 16 C 1.46495 * 119.99913 * 359.97438 * 15 13 12 17 17 C 1.46504 * 119.99835 * 180.02562 * 15 13 12 18 18 C 1.50702 * 109.47094 * 90.00033 * 17 15 13 19 19 H 1.07998 * 119.99938 * 359.97438 * 18 17 15 20 20 C 1.37874 * 119.99976 * 180.02562 * 18 17 15 21 21 N 1.31512 * 120.00317 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99943 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47054 * 90.00042 * 22 20 18 24 24 H 1.48504 * 109.46929 * 210.00261 * 22 20 18 25 25 H 1.48497 * 109.47054 * 330.00113 * 22 20 18 26 26 H 1.08991 * 109.47198 * 59.99884 * 1 2 3 27 27 H 1.09003 * 109.46888 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47430 * 299.99465 * 1 2 3 29 29 H 1.09003 * 109.47401 * 239.99766 * 2 1 3 30 30 H 1.09004 * 109.47411 * 119.99994 * 2 1 3 31 31 H 1.08992 * 110.99254 * 322.14848 * 5 3 2 32 32 H 1.09008 * 110.98893 * 85.92361 * 5 3 2 33 33 H 1.08998 * 110.70368 * 154.03610 * 6 5 3 34 34 H 1.08999 * 110.70705 * 277.10291 * 6 5 3 35 35 H 1.08995 * 109.46567 * 173.50285 * 9 7 6 36 36 H 1.09000 * 109.46858 * 293.50092 * 9 7 6 37 37 H 1.09001 * 109.47172 * 53.50694 * 9 7 6 38 38 H 1.09001 * 109.46931 * 38.18934 * 11 10 7 39 39 H 1.08997 * 109.46851 * 158.19197 * 11 10 7 40 40 H 1.08996 * 109.47386 * 293.67277 * 12 11 10 41 41 H 1.09000 * 109.47088 * 53.67815 * 12 11 10 42 42 H 1.09001 * 109.46935 * 90.00440 * 16 15 13 43 43 H 1.09004 * 109.46926 * 209.99987 * 16 15 13 44 44 H 1.08996 * 109.47314 * 329.99899 * 16 15 13 45 45 H 1.09005 * 109.46984 * 209.99800 * 17 15 13 46 46 H 1.08997 * 109.46874 * 329.99701 * 17 15 13 47 47 H 0.96994 * 120.00698 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6449 1.9839 -0.8596 5 6 3.5888 1.4695 -0.0108 6 6 3.8823 2.8607 0.6099 7 6 2.7604 3.0175 1.6579 8 1 3.1302 2.7314 2.6425 9 6 2.2708 4.4669 1.6832 10 7 1.6593 2.1230 1.2562 11 6 0.4064 2.8720 1.0903 12 6 -0.2485 3.0793 2.4575 13 6 -1.4490 3.9779 2.3081 14 8 -1.7508 4.4103 1.2160 15 7 -2.1868 4.3018 3.3886 16 6 -1.8219 3.7800 4.7079 17 6 -3.3542 5.1750 3.2434 18 6 -4.5774 4.3373 2.9726 19 1 -4.4935 3.2622 2.9141 20 6 -5.8034 4.9436 2.7985 21 7 -6.8708 4.2127 2.5617 22 14 -5.9484 6.8033 2.8990 23 1 -5.7454 7.3892 1.5497 24 1 -7.2981 7.1682 3.3993 25 1 -4.9169 7.3307 3.8280 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9975 0.6714 0.6088 32 1 3.9733 1.4065 -1.0289 33 1 4.8613 2.8701 1.0890 34 1 3.8178 3.6420 -0.1475 35 1 1.4040 4.5460 2.3393 36 1 3.0669 5.1129 2.0533 37 1 1.9925 4.7741 0.6751 38 1 0.6194 3.8409 0.6388 39 1 -0.2695 2.3110 0.4450 40 1 -0.5633 2.1163 2.8594 41 1 0.4680 3.5402 3.1374 42 1 -1.1358 4.4725 5.1955 43 1 -2.7199 3.6697 5.3160 44 1 -1.3389 2.8096 4.5939 45 1 -3.4993 5.7435 4.1620 46 1 -3.1930 5.8619 2.4126 47 1 -7.7333 4.6392 2.4397 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124641484.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:12 Heat of formation + Delta-G solvation = -27.539348 kcal Electronic energy + Delta-G solvation = -23539.993626 eV Core-core repulsion = 20336.965315 eV Total energy + Delta-G solvation = -3203.028311 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.17016 -38.78977 -34.93632 -34.19460 -33.32864 -32.47569 -29.90538 -29.65532 -28.01832 -25.89727 -25.81078 -23.95431 -22.26204 -21.72736 -20.73112 -19.17872 -18.28796 -16.96570 -16.71191 -16.61049 -15.48499 -15.36492 -15.19648 -14.35230 -14.01545 -13.69133 -13.59578 -13.45266 -13.21491 -12.89217 -12.63872 -12.40236 -12.31549 -12.12064 -12.03292 -11.92666 -11.69062 -11.44930 -11.35902 -11.08822 -11.06525 -10.88540 -10.76659 -10.64643 -10.52576 -10.50241 -10.29341 -10.12412 -9.52217 -8.95528 -8.57260 -8.24969 -7.66196 -6.06926 -4.05465 3.30156 3.36096 3.37831 3.40586 3.67127 4.10867 4.41082 4.46181 4.52456 4.74945 4.97680 5.13195 5.18947 5.20545 5.24015 5.27265 5.31233 5.37724 5.43555 5.47189 5.51273 5.59848 5.66097 5.67899 5.75676 5.85221 5.88198 5.90194 5.99648 6.00165 6.04559 6.09074 6.17879 6.22344 6.27664 6.35945 6.46810 6.72760 6.96477 7.06544 7.12906 7.37654 7.63346 8.29505 8.49450 8.95477 9.03337 9.53566 11.06567 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024947 B = 0.003971 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.132154 B = 7049.722803 C = 7536.789159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.104 4.104 3 C 0.071 3.929 4 H 0.054 0.946 5 C -0.125 4.125 6 C -0.139 4.139 7 C 0.069 3.931 8 H 0.084 0.916 9 C -0.180 4.180 10 N -0.521 5.521 11 C 0.048 3.952 12 C -0.133 4.133 13 C 0.506 3.494 14 O -0.545 6.545 15 N -0.599 5.599 16 C 0.083 3.917 17 C 0.215 3.785 18 C -0.528 4.528 19 H 0.074 0.926 20 C 0.072 3.928 21 N -0.898 5.898 22 Si 0.877 3.123 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.266 1.266 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.044 0.956 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.029 0.971 46 H 0.036 0.964 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.088 -4.890 -0.573 22.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.142 4.142 3 C -0.037 4.037 4 H 0.072 0.928 5 C -0.163 4.163 6 C -0.177 4.177 7 C -0.039 4.039 8 H 0.102 0.898 9 C -0.237 4.237 10 N -0.245 5.245 11 C -0.080 4.080 12 C -0.173 4.173 13 C 0.292 3.708 14 O -0.423 6.423 15 N -0.331 5.331 16 C -0.061 4.061 17 C 0.094 3.906 18 C -0.566 4.566 19 H 0.092 0.908 20 C -0.130 4.130 21 N -0.537 5.537 22 Si 0.703 3.297 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.191 1.191 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.062 0.938 43 H 0.093 0.907 44 H 0.081 0.919 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 21.614 -5.002 -0.778 22.199 hybrid contribution -0.241 1.498 -0.445 1.581 sum 21.373 -3.504 -1.223 21.692 Atomic orbital electron populations 1.21877 0.95586 1.01462 1.02497 1.21432 0.96310 0.94918 1.01518 1.22598 0.94225 0.95556 0.91329 0.92760 1.22723 0.95260 0.97364 1.00913 1.22878 0.98979 0.97375 0.98470 1.22402 0.91018 0.91490 0.98960 0.89848 1.22552 1.02234 0.96233 1.02681 1.63579 1.02513 1.28135 1.30289 1.22292 0.90553 0.98645 0.96515 1.21740 0.95947 1.00451 0.99196 1.20425 0.84175 0.81776 0.84405 1.90655 1.71298 1.54722 1.25615 1.47848 1.28979 1.49467 1.06819 1.21662 1.01019 0.98018 0.85366 1.19648 0.83505 0.90402 0.97021 1.21343 0.90632 0.95468 1.49176 0.90782 1.24862 0.95614 0.98103 0.94470 1.69896 0.99383 1.35522 1.48875 0.86845 0.77530 0.86211 0.79065 1.19938 1.21071 1.19094 0.93135 0.93080 0.91371 0.92235 0.91388 0.90660 0.91151 0.91061 0.91477 0.90718 0.92457 0.92218 0.92023 0.89895 0.88939 0.89221 0.93777 0.90670 0.91939 0.95342 0.94647 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 8.64 37.15 0.32 -1.51 16 2 C -0.10 -1.05 5.67 -26.74 -0.15 -1.20 16 3 C 0.07 0.76 2.53 -66.18 -0.17 0.59 16 4 H 0.05 0.63 7.81 -51.93 -0.41 0.23 16 5 C -0.12 -1.07 6.50 -24.59 -0.16 -1.23 16 6 C -0.14 -1.20 6.47 -24.90 -0.16 -1.36 16 7 C 0.07 0.71 3.82 -66.72 -0.25 0.46 16 8 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 9 C -0.18 -1.96 7.65 37.16 0.28 -1.67 16 10 N -0.52 -6.11 4.55 -215.52 -0.98 -7.09 16 11 C 0.05 0.68 2.95 -3.82 -0.01 0.67 16 12 C -0.13 -1.98 3.81 -27.88 -0.11 -2.09 16 13 C 0.51 10.32 7.67 -10.98 -0.08 10.23 16 14 O -0.54 -13.40 15.47 5.56 0.09 -13.32 16 15 N -0.60 -12.50 2.86 -182.95 -0.52 -13.03 16 16 C 0.08 1.30 10.24 59.84 0.61 1.91 16 17 C 0.21 5.35 4.23 -5.19 -0.02 5.33 16 18 C -0.53 -15.40 9.94 -34.44 -0.34 -15.74 16 19 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 20 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 21 N -0.90 -28.00 13.96 55.43 0.77 -27.22 16 22 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 23 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 26 H 0.05 0.61 8.06 -51.93 -0.42 0.19 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.91 6.22 -51.93 -0.32 0.59 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.62 8.06 -51.93 -0.42 0.20 16 32 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.60 7.79 -51.93 -0.40 0.19 16 35 H 0.07 0.91 4.48 -51.93 -0.23 0.68 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.71 6.73 -51.93 -0.35 0.36 16 38 H 0.06 0.95 4.95 -51.93 -0.26 0.70 16 39 H 0.08 1.31 5.53 -51.93 -0.29 1.03 16 40 H 0.09 1.32 7.40 -51.93 -0.38 0.94 16 41 H 0.09 1.16 5.92 -51.93 -0.31 0.85 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 44 H 0.06 0.82 6.44 -51.93 -0.33 0.49 16 45 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 46 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 47 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 353.56 15.07 5.33 5.33 Total: -1.00 -33.28 353.56 -8.56 -41.85 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -8.24 Total: -0.08 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -0.34 Total: -3.59 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.73 Total: -47.34 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.09 Total: -13.32 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.28 -8.56 -41.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124641484.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.308 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds