Wall clock time and date at job start Tue Mar 31 2020 05:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47250 * 2 1 4 4 H 1.08997 * 110.46422 * 55.67113 * 3 2 1 5 5 C 1.54374 * 110.41084 * 178.09125 * 3 2 1 6 6 C 1.54266 * 105.06129 * 142.62982 * 5 3 2 7 7 C 1.54376 * 105.05841 * 359.97438 * 6 5 3 8 8 H 1.08997 * 110.41457 * 94.92640 * 7 6 5 9 9 C 1.52998 * 110.51145 * 217.31569 * 7 6 5 10 10 N 1.48558 * 104.59471 * 336.14543 * 7 6 5 11 11 C 1.46901 * 110.99727 * 159.04214 * 10 7 6 12 12 C 1.53000 * 109.47241 * 296.51526 * 11 10 7 13 13 C 1.50703 * 109.47403 * 177.00389 * 12 11 10 14 14 O 1.21278 * 119.99431 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00201 * 180.02562 * 13 12 11 16 16 C 1.46501 * 119.99780 * 359.97438 * 15 13 12 17 17 C 1.46502 * 120.00049 * 180.02562 * 15 13 12 18 18 C 1.50692 * 109.47364 * 89.99373 * 17 15 13 19 19 H 1.08005 * 120.00297 * 0.02562 * 18 17 15 20 20 C 1.37882 * 119.99814 * 179.97438 * 18 17 15 21 21 N 1.31510 * 120.00159 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99650 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47563 * 359.97438 * 22 20 18 24 24 H 1.48507 * 109.47231 * 120.00413 * 22 20 18 25 25 H 1.48502 * 109.47330 * 239.99971 * 22 20 18 26 26 H 1.09001 * 109.46818 * 319.15874 * 1 2 3 27 27 H 1.09005 * 109.46842 * 79.15241 * 1 2 3 28 28 H 1.09002 * 109.47254 * 199.15461 * 1 2 3 29 29 H 1.09004 * 109.46889 * 239.99899 * 2 1 3 30 30 H 1.09003 * 109.47128 * 120.00000 * 2 1 3 31 31 H 1.08998 * 110.32919 * 23.73275 * 5 3 2 32 32 H 1.09002 * 110.41135 * 261.56759 * 5 3 2 33 33 H 1.09001 * 110.32227 * 241.10226 * 6 5 3 34 34 H 1.09005 * 110.32502 * 118.89388 * 6 5 3 35 35 H 1.08999 * 109.47246 * 180.34699 * 9 7 6 36 36 H 1.09000 * 109.47575 * 300.35362 * 9 7 6 37 37 H 1.09005 * 109.47253 * 60.34769 * 9 7 6 38 38 H 1.09000 * 109.47657 * 56.51689 * 11 10 7 39 39 H 1.09009 * 109.46856 * 176.51690 * 11 10 7 40 40 H 1.08999 * 109.46974 * 297.00193 * 12 11 10 41 41 H 1.09001 * 109.47048 * 57.00027 * 12 11 10 42 42 H 1.09001 * 109.47143 * 90.00481 * 16 15 13 43 43 H 1.09003 * 109.47131 * 210.00225 * 16 15 13 44 44 H 1.08998 * 109.47214 * 330.00232 * 16 15 13 45 45 H 1.09004 * 109.46799 * 209.99823 * 17 15 13 46 46 H 1.09000 * 109.46926 * 329.99407 * 17 15 13 47 47 H 0.96999 * 119.99977 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6241 1.9937 0.8433 5 6 3.5828 1.4680 0.0482 6 6 3.9926 2.6483 -0.8567 7 6 2.6630 3.2361 -1.3760 8 1 2.3441 4.0680 -0.7481 9 6 2.8094 3.6915 -2.8293 10 7 1.6946 2.1136 -1.2799 11 6 0.3126 2.6112 -1.2569 12 6 0.0966 3.4589 -0.0016 13 6 -1.2981 4.0296 -0.0148 14 8 -2.0455 3.7830 -0.9375 15 7 -1.7145 4.8149 0.9983 16 6 -0.8114 5.1131 2.1127 17 6 -3.0705 5.3692 0.9858 18 6 -4.0104 4.4135 1.6743 19 1 -3.6351 3.4859 2.0810 20 6 -5.3492 4.7236 1.7860 21 7 -5.8061 5.8532 1.2913 22 14 -6.5141 3.5391 2.6401 23 1 -5.7572 2.3488 3.1046 24 1 -7.1399 4.2141 3.8055 25 1 -7.5715 3.1124 1.6889 26 1 -0.3633 0.7775 0.6721 27 1 -0.3633 0.1934 -1.0094 28 1 -0.3634 -0.9708 0.3372 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9893 0.5343 -0.3403 32 1 3.9286 1.6353 1.0683 33 1 4.6002 2.2937 -1.6893 34 1 4.5379 3.3957 -0.2804 35 1 1.8641 4.1086 -3.1764 36 1 3.5880 4.4515 -2.8952 37 1 3.0806 2.8387 -3.4517 38 1 0.1309 3.2203 -2.1424 39 1 -0.3773 1.7672 -1.2486 40 1 0.2261 2.8365 0.8838 41 1 0.8219 4.2723 0.0167 42 1 -0.2432 6.0159 1.8883 43 1 -1.3938 5.2668 3.0212 44 1 -0.1254 4.2786 2.2577 45 1 -3.0769 6.3254 1.5091 46 1 -3.3932 5.5169 -0.0448 47 1 -6.7479 6.0715 1.3702 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124641714.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:15 Heat of formation + Delta-G solvation = -36.854604 kcal Electronic energy + Delta-G solvation = -23684.228298 eV Core-core repulsion = 20480.796047 eV Total energy + Delta-G solvation = -3203.432251 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.17640 -38.62253 -34.84638 -34.02032 -33.30593 -32.55509 -30.23536 -29.25022 -27.52688 -26.00418 -25.62785 -23.96624 -22.57558 -21.91737 -20.52928 -19.67621 -18.21206 -16.98314 -16.54009 -15.62320 -15.39276 -15.28379 -15.16380 -14.72140 -14.25492 -13.71847 -13.58804 -13.34442 -13.05186 -12.87229 -12.50365 -12.40674 -12.16709 -12.09625 -11.97732 -11.89058 -11.81034 -11.42839 -11.34816 -11.19594 -11.05616 -10.88094 -10.83298 -10.61787 -10.58657 -10.46748 -10.16190 -9.98394 -9.61048 -8.88669 -8.44971 -8.39354 -7.63812 -6.04595 -4.09318 3.29227 3.36391 3.39403 3.45491 3.85561 4.04452 4.43172 4.46878 4.60399 4.82586 4.91804 5.12240 5.16892 5.17676 5.24546 5.28402 5.31224 5.33896 5.43348 5.46740 5.58007 5.59077 5.65323 5.71026 5.78431 5.85835 5.87453 5.90710 5.94279 6.01345 6.05870 6.07093 6.18098 6.20263 6.25114 6.33354 6.56394 6.94513 7.03353 7.10831 7.44521 7.54519 7.91885 8.23455 8.42562 8.90406 9.10797 9.55926 11.03568 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023062 B = 0.004173 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.810474 B = 6708.878193 C = 7207.256116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.105 4.105 3 C 0.051 3.949 4 H 0.061 0.939 5 C -0.120 4.120 6 C -0.119 4.119 7 C 0.049 3.951 8 H 0.056 0.944 9 C -0.136 4.136 10 N -0.496 5.496 11 C 0.047 3.953 12 C -0.180 4.180 13 C 0.507 3.493 14 O -0.541 6.541 15 N -0.604 5.604 16 C 0.085 3.915 17 C 0.244 3.756 18 C -0.525 4.525 19 H 0.057 0.943 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.898 3.102 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.282 1.282 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.042 0.958 43 H 0.073 0.927 44 H 0.054 0.946 45 H 0.031 0.969 46 H 0.043 0.957 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.576 -6.604 -1.348 21.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.143 4.143 3 C -0.058 4.058 4 H 0.079 0.921 5 C -0.159 4.159 6 C -0.157 4.157 7 C -0.059 4.059 8 H 0.074 0.926 9 C -0.194 4.194 10 N -0.219 5.219 11 C -0.081 4.081 12 C -0.221 4.221 13 C 0.293 3.707 14 O -0.419 6.419 15 N -0.336 5.336 16 C -0.059 4.059 17 C 0.125 3.875 18 C -0.564 4.564 19 H 0.075 0.925 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.208 1.208 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.061 0.939 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.049 0.951 46 H 0.062 0.938 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 20.034 -6.977 -2.319 21.341 hybrid contribution -0.856 0.135 1.419 1.662 sum 19.178 -6.843 -0.900 20.382 Atomic orbital electron populations 1.22017 0.95587 1.01453 1.02551 1.21442 0.96146 0.94941 1.01746 1.22879 0.94821 0.95915 0.92149 0.92109 1.22338 0.94961 0.99038 0.99517 1.22342 0.96744 0.97384 0.99275 1.22715 0.92405 0.93449 0.97344 0.92615 1.21697 1.01593 1.00904 0.95158 1.65632 1.02412 1.21968 1.31873 1.22405 0.89726 0.99476 0.96484 1.22413 0.96579 1.01139 1.01969 1.20206 0.88344 0.79407 0.82714 1.90666 1.56585 1.59216 1.35445 1.48181 1.16161 1.49050 1.20247 1.21605 0.93826 0.99250 0.91237 1.19285 0.75736 0.93642 0.98827 1.21462 0.92992 1.05125 1.36785 0.92488 1.24939 0.98053 0.95446 0.95686 1.69942 1.14868 1.22945 1.45646 0.86449 0.80859 0.81007 0.79147 1.19820 1.20958 1.20830 0.92667 0.91538 0.93075 0.91269 0.92028 0.91099 0.91640 0.91089 0.91679 0.92518 0.92584 0.91911 0.89993 0.88327 0.89227 0.89804 0.93900 0.90789 0.92733 0.95123 0.93847 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 8.39 37.16 0.31 -1.62 16 2 C -0.10 -1.09 5.54 -26.73 -0.15 -1.24 16 3 C 0.05 0.54 2.23 -66.06 -0.15 0.39 16 4 H 0.06 0.68 5.32 -51.93 -0.28 0.41 16 5 C -0.12 -1.06 6.55 -25.35 -0.17 -1.22 16 6 C -0.12 -1.04 6.55 -25.35 -0.17 -1.21 16 7 C 0.05 0.52 2.74 -66.07 -0.18 0.34 16 8 H 0.06 0.62 5.80 -51.93 -0.30 0.32 16 9 C -0.14 -1.36 9.31 37.16 0.35 -1.02 16 10 N -0.50 -5.94 5.01 -214.34 -1.07 -7.01 16 11 C 0.05 0.69 4.13 -3.82 -0.02 0.67 16 12 C -0.18 -2.69 3.28 -27.88 -0.09 -2.78 16 13 C 0.51 10.60 7.67 -10.99 -0.08 10.52 16 14 O -0.54 -13.66 15.54 5.56 0.09 -13.57 16 15 N -0.60 -13.00 2.86 -182.95 -0.52 -13.52 16 16 C 0.09 1.37 10.24 59.85 0.61 1.98 16 17 C 0.24 6.50 5.16 -5.20 -0.03 6.47 16 18 C -0.52 -15.06 9.39 -34.44 -0.32 -15.38 16 19 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 22 Si 0.90 22.04 29.54 -169.99 -5.02 17.01 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 26 H 0.05 0.74 6.69 -51.93 -0.35 0.39 16 27 H 0.07 0.88 6.16 -51.93 -0.32 0.56 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.59 7.86 -51.93 -0.41 0.19 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.59 7.86 -51.93 -0.41 0.18 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.63 7.48 -51.93 -0.39 0.24 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 1.31 7.25 -51.93 -0.38 0.93 16 39 H 0.10 1.56 4.59 -51.92 -0.24 1.33 16 40 H 0.09 1.24 4.48 -51.93 -0.23 1.01 16 41 H 0.08 1.12 6.02 -51.93 -0.31 0.81 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 44 H 0.05 0.72 6.44 -51.93 -0.33 0.39 16 45 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 46 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 354.96 15.07 5.35 5.35 Total: -1.00 -32.34 354.96 -8.72 -41.05 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -8.10 Total: -0.76 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -0.18 Total: -2.44 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -0.86 Total: -46.65 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.34 -8.72 -41.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124641714.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.200 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds