Wall clock time and date at job start Tue Mar 31 2020 06:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46873 * 2 1 4 4 N 1.46496 * 109.47069 * 180.02562 * 3 2 1 5 5 C 1.34776 * 120.00268 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99868 * 4.85316 * 5 4 3 7 7 C 1.50703 * 120.00199 * 184.84874 * 5 4 3 8 8 N 1.46896 * 109.46949 * 40.58496 * 7 5 4 9 9 C 1.46896 * 111.00461 * 63.36007 * 8 7 5 10 10 C 1.53000 * 109.47462 * 177.34931 * 9 8 7 11 11 C 1.50697 * 109.47241 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00274 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99981 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99693 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00156 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46970 * 90.00049 * 15 13 11 17 17 H 1.48499 * 109.46943 * 210.00013 * 15 13 11 18 18 H 1.48501 * 109.46830 * 329.99934 * 15 13 11 19 19 C 1.52997 * 109.46883 * 160.57950 * 7 5 4 20 20 C 1.52999 * 109.47104 * 60.00319 * 19 7 5 21 21 C 1.52993 * 109.47231 * 60.00128 * 20 19 7 22 22 C 1.53005 * 109.46873 * 299.99760 * 21 20 19 23 23 C 1.52993 * 109.47231 * 280.58088 * 7 5 4 24 24 H 1.09000 * 109.47731 * 59.99624 * 1 2 3 25 25 H 1.09004 * 109.47343 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47155 * 299.99893 * 1 2 3 27 27 H 1.08995 * 109.47028 * 240.00411 * 2 1 3 28 28 H 1.08999 * 109.47035 * 120.00105 * 2 1 3 29 29 H 1.09003 * 109.47143 * 60.00099 * 3 2 1 30 30 H 1.08999 * 109.47376 * 299.99896 * 3 2 1 31 31 H 0.97006 * 119.99966 * 359.97438 * 4 3 2 32 32 H 1.00905 * 111.00072 * 187.32194 * 8 7 5 33 33 H 1.08999 * 109.47527 * 297.35169 * 9 8 7 34 34 H 1.09004 * 109.46644 * 57.35139 * 9 8 7 35 35 H 1.09004 * 109.47366 * 300.00785 * 10 9 8 36 36 H 1.09004 * 109.47021 * 60.00439 * 10 9 8 37 37 H 0.97009 * 119.99465 * 180.02562 * 14 13 11 38 38 H 1.09007 * 109.47552 * 300.00333 * 19 7 5 39 39 H 1.09001 * 109.47341 * 180.02562 * 19 7 5 40 40 H 1.08998 * 109.47490 * 299.99647 * 20 19 7 41 41 H 1.09010 * 109.47145 * 180.02562 * 20 19 7 42 42 H 1.08996 * 109.47819 * 59.99915 * 21 20 19 43 43 H 1.08999 * 109.47439 * 180.02562 * 21 20 19 44 44 H 1.08996 * 109.46777 * 180.02562 * 22 21 20 45 45 H 1.08998 * 109.46866 * 299.99880 * 22 21 20 46 46 H 1.09001 * 109.46836 * 180.02562 * 23 7 5 47 47 H 1.08997 * 109.47494 * 59.99961 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1788 2.6098 -0.0002 6 8 3.5757 3.6582 0.0895 7 6 5.6817 2.6122 -0.1112 8 7 6.1020 1.6008 -1.0900 9 6 5.5972 1.9241 -2.4311 10 6 6.1091 0.8869 -3.4326 11 6 5.5916 1.2191 -4.8084 12 1 4.9611 2.0837 -4.9541 13 6 5.9232 0.4191 -5.8814 14 7 6.6906 -0.6341 -5.7039 15 14 5.2824 0.8311 -7.5869 16 1 6.2466 1.7268 -8.2749 17 1 5.1225 -0.4197 -8.3711 18 1 3.9688 1.5138 -7.4705 19 6 6.1571 3.9928 -0.5683 20 6 5.7193 5.0463 0.4512 21 6 6.3319 4.7217 1.8150 22 6 5.8565 3.3411 2.2722 23 6 6.2943 2.2876 1.2527 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9899 0.6025 -0.0006 32 1 7.1059 1.4989 -1.0963 33 1 4.5073 1.9130 -2.4215 34 1 5.9479 2.9143 -2.7222 35 1 7.1990 0.8980 -3.4422 36 1 5.7584 -0.1032 -3.1414 37 1 6.9242 -1.1968 -6.4588 38 1 5.7206 4.2241 -1.5400 39 1 7.2441 3.9945 -0.6490 40 1 4.6322 5.0446 0.5315 41 1 6.0575 6.0300 0.1253 42 1 7.4189 4.7235 1.7349 43 1 6.0197 5.4720 2.5415 44 1 6.2927 3.1102 3.2440 45 1 4.7695 3.3395 2.3525 46 1 7.3814 2.2899 1.1725 47 1 5.9557 1.3041 1.5784 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132305737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:34 Heat of formation + Delta-G solvation = -67.088887 kcal Electronic energy + Delta-G solvation = -23735.363568 eV Core-core repulsion = 20530.620260 eV Total energy + Delta-G solvation = -3204.743308 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.66723 -37.45843 -35.67564 -35.09686 -33.03744 -32.36018 -30.69005 -30.22553 -27.53024 -26.36535 -24.17360 -22.89855 -22.55959 -21.54118 -20.76960 -20.16962 -19.24244 -16.67581 -16.20729 -15.93588 -15.73808 -15.33792 -14.88579 -14.45434 -14.35027 -14.07345 -13.65754 -13.44861 -13.28660 -12.91700 -12.84225 -12.37611 -12.26529 -12.10703 -12.05567 -11.86648 -11.84315 -11.17324 -11.16433 -10.97739 -10.96180 -10.90638 -10.66151 -10.57103 -10.46798 -10.06088 -9.97181 -9.42103 -9.17248 -9.06340 -8.74089 -8.38171 -7.94363 -6.02718 -4.04964 2.89878 3.30669 3.37012 3.40825 3.45799 4.35264 4.51882 4.73642 4.84100 4.86117 4.96036 5.01223 5.21353 5.21593 5.33661 5.36109 5.39316 5.55845 5.59899 5.61756 5.62839 5.69284 5.74727 5.84042 5.94274 5.99907 6.09310 6.11735 6.16795 6.18154 6.24020 6.24874 6.34565 6.37372 6.51445 6.57480 6.92502 6.96351 7.28481 7.65769 7.70670 7.83594 7.85232 8.01846 8.40133 8.56107 9.01796 9.59163 11.08535 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012524 B = 0.005272 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.238127 B = 5310.217642 C = 6771.262015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.137 4.137 3 C 0.119 3.881 4 N -0.717 5.717 5 C 0.541 3.459 6 O -0.545 6.545 7 C 0.097 3.903 8 N -0.679 5.679 9 C 0.059 3.941 10 C 0.028 3.972 11 C -0.521 4.521 12 H 0.053 0.947 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.130 4.130 20 C -0.142 4.142 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.103 4.103 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.410 0.590 32 H 0.345 0.655 33 H 0.058 0.942 34 H 0.025 0.975 35 H 0.014 0.986 36 H 0.024 0.976 37 H 0.260 0.740 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.110 0.890 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.625 3.927 16.402 17.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.175 4.175 3 C -0.005 4.005 4 N -0.368 5.368 5 C 0.327 3.673 6 O -0.423 6.423 7 C 0.002 3.998 8 N -0.311 5.311 9 C -0.069 4.069 10 C -0.009 4.009 11 C -0.560 4.560 12 H 0.071 0.929 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.169 4.169 20 C -0.179 4.179 21 C -0.152 4.152 22 C -0.158 4.158 23 C -0.141 4.141 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.246 0.754 32 H 0.164 0.836 33 H 0.077 0.923 34 H 0.043 0.957 35 H 0.032 0.968 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.128 0.872 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.525 4.070 16.488 17.859 hybrid contribution 0.612 0.452 -1.406 1.598 sum -4.913 4.522 15.083 16.495 Atomic orbital electron populations 1.21668 0.94877 1.01956 1.02057 1.21734 0.96626 0.96067 1.03075 1.21348 0.80304 0.97002 1.01873 1.45952 1.06678 1.09531 1.74678 1.20301 0.89365 0.83206 0.74432 1.90484 1.70068 1.31176 1.50614 1.21107 0.91682 0.92404 0.94587 1.60842 1.18017 1.44531 1.07702 1.22297 0.99295 0.98963 0.86380 1.19047 0.96152 0.93891 0.91821 1.21149 1.30983 1.11077 0.92744 0.92861 1.24976 0.95161 0.95004 0.99061 1.69970 1.36531 1.15629 1.31106 0.86608 0.79358 0.77773 0.84367 1.20667 1.21174 1.19884 1.22026 1.00355 0.94463 1.00104 1.22026 1.05117 0.97125 0.93647 1.21493 0.99861 0.96388 0.97484 1.21544 1.01363 0.95013 0.97873 1.21527 1.00863 0.99139 0.92540 0.92342 0.92313 0.92702 0.90706 0.91505 0.92011 0.91762 0.75450 0.83582 0.92340 0.95657 0.96774 0.95726 0.93000 0.91055 0.91913 0.87246 0.93139 0.92657 0.92498 0.91988 0.91873 0.90926 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.96 16 2 C -0.14 -1.42 6.05 -26.73 -0.16 -1.59 16 3 C 0.12 1.51 5.68 -4.04 -0.02 1.49 16 4 N -0.72 -10.17 5.26 -60.29 -0.32 -10.49 16 5 C 0.54 8.63 4.23 -10.98 -0.05 8.59 16 6 O -0.55 -9.90 12.94 5.55 0.07 -9.83 16 7 C 0.10 1.42 0.62 -132.76 -0.08 1.33 16 8 N -0.68 -11.09 5.61 -101.15 -0.57 -11.65 16 9 C 0.06 1.20 4.94 -3.83 -0.02 1.18 16 10 C 0.03 0.71 5.21 -27.88 -0.15 0.57 16 11 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 12 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 15 Si 0.89 21.66 29.54 -169.99 -5.02 16.63 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 19 C -0.13 -1.96 4.21 -26.73 -0.11 -2.08 16 20 C -0.14 -1.98 5.62 -26.74 -0.15 -2.13 16 21 C -0.11 -1.34 5.92 -26.73 -0.16 -1.50 16 22 C -0.12 -1.37 5.70 -26.73 -0.15 -1.53 16 23 C -0.10 -1.23 4.95 -26.73 -0.13 -1.36 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.41 5.52 8.10 -40.82 -0.33 5.19 16 32 H 0.35 5.41 8.65 -39.29 -0.34 5.07 16 33 H 0.06 1.27 7.15 -51.93 -0.37 0.90 16 34 H 0.03 0.53 6.09 -51.93 -0.32 0.22 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.07 1.24 6.29 -51.92 -0.33 0.92 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.11 1.77 4.94 -51.98 -0.26 1.52 16 41 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.82 7.02 -51.93 -0.36 0.45 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 360.15 15.07 5.43 5.43 Total: -1.00 -30.27 360.15 -9.51 -39.78 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -8.61 Total: 7.23 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -1.23 Total: -11.34 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -0.15 Total: -47.90 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.07 Total: -9.83 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.27 -9.51 -39.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132305737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.313 kcal (2) G-P(sol) polarization free energy of solvation -30.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds