Wall clock time and date at job start Tue Mar 31 2020 06:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46834 * 2 1 4 4 H 1.09003 * 109.47548 * 305.00320 * 3 2 1 5 5 C 1.50700 * 109.47305 * 184.99996 * 3 2 1 6 6 H 1.07996 * 119.99957 * 240.00178 * 5 3 2 7 7 C 1.37880 * 119.99705 * 59.99876 * 5 3 2 8 8 N 1.31510 * 120.00081 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99590 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47376 * 60.00554 * 9 7 5 11 11 H 1.48505 * 109.46883 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47169 * 300.00130 * 9 7 5 13 13 N 1.46504 * 109.46934 * 65.00306 * 3 2 1 14 14 C 1.34787 * 119.99715 * 274.99983 * 13 3 2 15 15 O 1.21280 * 119.99583 * 359.97438 * 14 13 3 16 16 C 1.50693 * 119.99432 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.47092 * 296.37119 * 16 14 13 18 18 C 1.52997 * 109.47655 * 56.37851 * 16 14 13 19 19 N 1.46904 * 109.46845 * 176.37666 * 16 14 13 20 20 C 1.48554 * 111.00213 * 164.37638 * 19 16 14 21 21 H 1.09001 * 110.41087 * 40.25920 * 20 19 16 22 22 C 1.53005 * 110.51390 * 277.86743 * 20 19 16 23 23 C 1.54378 * 104.59622 * 159.03933 * 20 19 16 24 24 C 1.54265 * 105.06006 * 336.14565 * 23 20 19 25 25 C 1.48567 * 110.99851 * 279.79597 * 19 16 14 26 26 H 1.08997 * 110.40714 * 319.73747 * 25 19 16 27 27 C 1.52997 * 110.51210 * 82.12937 * 25 19 16 28 28 H 1.09000 * 109.46507 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47001 * 299.99803 * 1 2 3 30 30 H 1.08998 * 109.47380 * 60.00180 * 1 2 3 31 31 H 1.09003 * 109.47511 * 240.00648 * 2 1 3 32 32 H 1.08998 * 109.47380 * 119.99820 * 2 1 3 33 33 H 0.96998 * 119.99773 * 179.97438 * 8 7 5 34 34 H 0.96994 * 120.00011 * 95.00136 * 13 3 2 35 35 H 1.09002 * 109.47551 * 171.66364 * 18 16 14 36 36 H 1.09003 * 109.46888 * 291.65816 * 18 16 14 37 37 H 1.09000 * 109.47173 * 51.65770 * 18 16 14 38 38 H 1.09002 * 109.46819 * 301.72131 * 22 20 19 39 39 H 1.08999 * 109.46697 * 61.71800 * 22 20 19 40 40 H 1.09001 * 109.47071 * 181.71539 * 22 20 19 41 41 H 1.09000 * 110.32451 * 95.04210 * 23 20 19 42 42 H 1.09005 * 110.32446 * 217.25300 * 23 20 19 43 43 H 1.08994 * 110.32043 * 118.89601 * 24 23 20 44 44 H 1.08997 * 110.32075 * 241.10323 * 24 23 20 45 45 H 1.08996 * 109.47141 * 167.35956 * 27 25 19 46 46 H 1.09002 * 109.47271 * 287.35888 * 27 25 19 47 47 H 1.09002 * 109.47303 * 47.36056 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9817 -0.8418 5 6 3.5419 1.4445 -0.1238 6 1 4.1471 1.8891 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0049 0.8816 -1.3818 10 1 6.5976 0.1477 -0.2350 11 1 6.3978 0.2181 -2.6510 12 1 6.4993 2.2819 -1.3822 13 7 1.6524 2.0975 1.2519 14 6 0.4349 2.6643 1.3670 15 8 -0.3394 2.6326 0.4341 16 6 0.0366 3.3385 2.6546 17 1 0.0056 2.6008 3.4565 18 6 1.0581 4.4240 2.9993 19 7 -1.2911 3.9475 2.4979 20 6 -1.8793 4.2891 3.8186 21 1 -1.1156 4.6972 4.4807 22 6 -2.5292 3.0568 4.4511 23 6 -2.9467 5.3591 3.5040 24 6 -2.4991 5.9919 2.1702 25 6 -1.1988 5.2510 1.7912 26 1 -0.3287 5.8096 2.1361 27 6 -1.1285 5.0367 0.2780 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8292 -0.0602 -2.9502 34 1 2.2719 2.1232 1.9978 35 1 0.6957 5.0088 3.8448 36 1 2.0087 3.9587 3.2603 37 1 1.1979 5.0779 2.1385 38 1 -3.2980 2.6684 3.7831 39 1 -1.7713 2.2912 4.6169 40 1 -2.9811 3.3330 5.4037 41 1 -3.9267 4.8949 3.3927 42 1 -2.9710 6.1126 4.2912 43 1 -3.2593 5.8383 1.4044 44 1 -2.3037 7.0560 2.3029 45 1 -1.2869 5.9872 -0.2314 46 1 -0.1482 4.6410 0.0122 47 1 -1.9003 4.3291 -0.0250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132329194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:35 Heat of formation + Delta-G solvation = -36.403148 kcal Electronic energy + Delta-G solvation = -24308.716224 eV Core-core repulsion = 21105.303550 eV Total energy + Delta-G solvation = -3203.412674 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.19583 -38.21569 -34.94819 -33.52071 -32.52251 -32.16084 -30.74721 -28.75662 -27.81323 -26.85877 -24.34337 -23.71920 -22.82236 -20.65083 -20.25140 -19.39583 -18.74146 -17.15485 -16.37056 -15.60850 -15.33755 -14.85570 -14.61050 -14.52409 -14.01267 -13.59484 -13.29847 -13.15068 -12.64172 -12.54531 -12.49120 -12.33212 -11.86161 -11.72249 -11.71709 -11.39511 -11.36776 -11.22355 -11.17254 -10.96551 -10.89928 -10.79998 -10.65370 -10.37870 -10.25533 -10.18019 -10.08891 -9.53850 -8.99603 -8.71023 -8.44910 -8.16057 -7.64522 -6.08696 -4.17876 3.26558 3.32154 3.32932 3.57750 3.79471 4.29653 4.45947 4.57410 4.81410 4.95916 5.11047 5.21694 5.23731 5.25240 5.33936 5.40569 5.50604 5.57817 5.66017 5.72892 5.80677 5.88866 5.92131 5.94146 6.04125 6.13813 6.21502 6.27013 6.27664 6.46989 6.52963 6.55069 6.74869 6.89959 7.11505 7.13857 7.20160 7.30169 7.45640 7.58109 7.67748 7.82408 7.97438 8.24470 8.78201 8.86301 9.30023 9.50893 10.96393 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026536 B = 0.004485 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.900907 B = 6241.309937 C = 6415.163038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.275 3.725 4 H 0.047 0.953 5 C -0.533 4.533 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.714 5.714 14 C 0.506 3.494 15 O -0.519 6.519 16 C 0.049 3.951 17 H 0.096 0.904 18 C -0.180 4.180 19 N -0.474 5.474 20 C 0.054 3.946 21 H 0.050 0.950 22 C -0.136 4.136 23 C -0.118 4.118 24 C -0.120 4.120 25 C 0.054 3.946 26 H 0.057 0.943 27 C -0.127 4.127 28 H 0.019 0.981 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.097 0.903 32 H 0.028 0.972 33 H 0.264 0.736 34 H 0.384 0.616 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.038 0.962 46 H 0.065 0.935 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.586 8.717 12.407 17.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.173 3.827 4 H 0.065 0.935 5 C -0.572 4.572 6 H 0.077 0.923 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.363 5.363 14 C 0.290 3.710 15 O -0.395 6.395 16 C -0.063 4.063 17 H 0.114 0.886 18 C -0.239 4.239 19 N -0.198 5.198 20 C -0.054 4.054 21 H 0.068 0.932 22 C -0.193 4.193 23 C -0.156 4.156 24 C -0.158 4.158 25 C -0.054 4.054 26 H 0.075 0.925 27 C -0.184 4.184 28 H 0.038 0.962 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.115 0.885 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.216 0.784 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.083 0.917 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.456 8.183 11.207 16.792 hybrid contribution 1.971 0.452 0.800 2.174 sum -7.486 8.635 12.006 16.576 Atomic orbital electron populations 1.21822 0.98204 0.97849 1.01394 1.21930 0.92704 0.99947 1.02015 1.18696 0.93866 0.89055 0.81118 0.93483 1.21209 0.90917 1.38911 1.06143 0.92330 1.24871 0.98398 0.94888 0.95448 1.69886 1.35109 1.37634 1.09307 0.86557 0.85144 0.78245 0.77418 1.20224 1.21165 1.20268 1.46484 1.14725 1.56718 1.18352 1.19984 0.82621 0.79751 0.88669 1.90669 1.50901 1.58116 1.39829 1.21822 0.89382 0.97278 0.97837 0.88588 1.22376 0.99796 0.99784 1.01923 1.65328 1.19098 1.22051 1.13305 1.22657 0.96091 0.95597 0.91091 0.93205 1.21714 1.00966 0.96985 0.99664 1.22323 0.98975 0.97174 0.97125 1.22356 0.97670 0.98529 0.97295 1.22797 0.96717 0.89305 0.96541 0.92499 1.21789 1.04488 0.99778 0.92366 0.96165 0.93998 0.93228 0.88517 0.95269 0.92582 0.78428 0.92228 0.91318 0.91284 0.91679 0.92803 0.92623 0.91016 0.91826 0.90971 0.91886 0.94311 0.91656 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.52 37.16 0.32 -2.76 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.83 2.24 -69.08 -0.15 6.68 16 4 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 5 C -0.53 -13.99 8.73 -34.44 -0.30 -14.29 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.73 11.29 55.43 0.63 -24.10 16 9 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.71 -14.50 4.90 -54.93 -0.27 -14.77 16 14 C 0.51 9.73 4.91 -10.98 -0.05 9.68 16 15 O -0.52 -11.56 9.85 5.56 0.05 -11.50 16 16 C 0.05 0.73 2.67 -68.87 -0.18 0.55 16 17 H 0.10 1.33 7.10 -51.93 -0.37 0.96 16 18 C -0.18 -2.28 7.59 37.16 0.28 -1.99 16 19 N -0.47 -6.84 4.40 -207.88 -0.91 -7.76 16 20 C 0.05 0.62 2.72 -66.07 -0.18 0.44 16 21 H 0.05 0.54 6.55 -51.93 -0.34 0.20 16 22 C -0.14 -1.45 9.34 37.16 0.35 -1.10 16 23 C -0.12 -1.20 6.55 -25.35 -0.17 -1.37 16 24 C -0.12 -1.36 6.55 -25.35 -0.17 -1.52 16 25 C 0.05 0.75 2.43 -66.07 -0.16 0.59 16 26 H 0.06 0.76 5.25 -51.93 -0.27 0.49 16 27 C -0.13 -2.06 7.63 37.16 0.28 -1.77 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.04 0.93 5.64 -51.93 -0.29 0.64 16 30 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 31 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.38 6.91 7.91 -40.82 -0.32 6.59 16 35 H 0.06 0.64 6.59 -51.93 -0.34 0.30 16 36 H 0.07 0.81 7.63 -51.93 -0.40 0.41 16 37 H 0.07 0.96 6.56 -51.93 -0.34 0.62 16 38 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 39 H 0.05 0.59 7.30 -51.93 -0.38 0.21 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.72 7.85 -51.93 -0.41 0.31 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.84 7.86 -51.93 -0.41 0.43 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 1.25 6.02 -51.93 -0.31 0.94 16 47 H 0.07 1.31 7.61 -51.93 -0.40 0.92 16 LS Contribution 346.18 15.07 5.22 5.22 Total: -1.00 -28.83 346.18 -8.87 -37.70 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -8.19 Total: 8.07 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -0.38 Total: -8.42 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -0.56 Total: -46.63 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.05 Total: -11.50 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.83 -8.87 -37.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132329194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.293 kcal (2) G-P(sol) polarization free energy of solvation -28.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds