Wall clock time and date at job start Tue Mar 31 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47098 * 2 1 4 4 H 1.09006 * 109.47391 * 299.96177 * 3 2 1 5 5 C 1.50697 * 109.47122 * 179.97438 * 3 2 1 6 6 H 1.08000 * 120.00403 * 271.80349 * 5 3 2 7 7 C 1.37879 * 120.00005 * 91.80392 * 5 3 2 8 8 N 1.31517 * 119.99854 * 177.08021 * 7 5 3 9 9 Si 1.86794 * 120.00019 * 357.07799 * 7 5 3 10 10 H 1.48506 * 109.47155 * 84.89239 * 9 7 5 11 11 H 1.48500 * 109.47225 * 204.89031 * 9 7 5 12 12 H 1.48497 * 109.47362 * 324.89384 * 9 7 5 13 13 N 1.46499 * 109.47354 * 59.95889 * 3 2 1 14 14 C 1.34777 * 120.00467 * 274.99916 * 13 3 2 15 15 O 1.21278 * 119.99697 * 0.02562 * 14 13 3 16 16 C 1.50693 * 120.00198 * 179.97438 * 14 13 3 17 17 H 1.09004 * 109.47130 * 55.17824 * 16 14 13 18 18 C 1.53006 * 109.47518 * 295.17563 * 16 14 13 19 19 N 1.46903 * 109.47228 * 175.17278 * 16 14 13 20 20 C 1.48565 * 110.99637 * 83.03290 * 19 16 14 21 21 H 1.09003 * 110.41300 * 40.26402 * 20 19 16 22 22 C 1.52998 * 110.41120 * 277.82133 * 20 19 16 23 23 C 1.54382 * 104.59036 * 159.03964 * 20 19 16 24 24 C 1.54256 * 105.06269 * 336.15013 * 23 20 19 25 25 C 1.48558 * 110.99996 * 198.45142 * 19 16 14 26 26 H 1.08998 * 110.41642 * 319.73717 * 25 19 16 27 27 C 1.52997 * 110.40965 * 82.18302 * 25 19 16 28 28 H 1.08999 * 109.47220 * 300.00211 * 1 2 3 29 29 H 1.08996 * 109.47326 * 59.99993 * 1 2 3 30 30 H 1.09000 * 109.47173 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46773 * 239.99921 * 2 1 3 32 32 H 1.09001 * 109.46653 * 119.99792 * 2 1 3 33 33 H 0.97001 * 119.99681 * 180.02562 * 8 7 5 34 34 H 0.97003 * 119.99345 * 94.99903 * 13 3 2 35 35 H 1.08997 * 109.46813 * 69.99162 * 18 16 14 36 36 H 1.08993 * 109.46797 * 309.98830 * 18 16 14 37 37 H 1.08993 * 109.46967 * 189.98945 * 18 16 14 38 38 H 1.08995 * 109.47163 * 70.04460 * 22 20 19 39 39 H 1.09000 * 109.46838 * 190.04990 * 22 20 19 40 40 H 1.09003 * 109.46674 * 310.04650 * 22 20 19 41 41 H 1.09004 * 110.31921 * 95.04149 * 23 20 19 42 42 H 1.09000 * 110.32249 * 217.14349 * 23 20 19 43 43 H 1.09000 * 110.32414 * 118.89664 * 24 23 20 44 44 H 1.09006 * 110.31901 * 241.00291 * 24 23 20 45 45 H 1.08998 * 109.47261 * 62.45427 * 27 25 19 46 46 H 1.09009 * 109.46919 * 182.44561 * 27 25 19 47 47 H 1.08992 * 109.47384 * 302.44300 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6772 1.9561 -0.8904 5 6 3.5469 1.4424 0.0006 6 1 4.0866 1.4131 0.9357 7 6 4.2368 1.4798 -1.1926 8 7 5.5507 1.5378 -1.1909 9 14 3.3054 1.4481 -2.8114 10 1 2.8891 2.8277 -3.1701 11 1 4.1840 0.9032 -3.8774 12 1 2.1026 0.5881 -2.6736 13 7 1.5509 2.1333 1.1956 14 6 0.3289 2.7020 1.1930 15 8 -0.3660 2.6412 0.2009 16 6 -0.1744 3.4122 2.4231 17 1 0.5419 4.1789 2.7186 18 6 -0.3412 2.4040 3.5618 19 7 -1.4702 4.0395 2.1307 20 6 -2.5786 3.0595 2.2660 21 1 -2.4143 2.4167 3.1309 22 6 -2.7076 2.2207 0.9930 23 6 -3.8403 3.9253 2.4706 24 6 -3.3212 5.2624 3.0384 25 6 -1.7895 5.0920 3.1292 26 1 -1.5018 4.7673 4.1292 27 6 -1.0847 6.4012 2.7685 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 6.0361 1.5645 -2.0303 34 1 2.1066 2.1816 1.9893 35 1 0.6403 2.0703 3.8983 36 1 -0.9145 1.5474 3.2075 37 1 -0.8683 2.8761 4.3908 38 1 -1.8530 1.5491 0.9123 39 1 -3.6266 1.6361 1.0348 40 1 -2.7352 2.8795 0.1251 41 1 -4.3455 4.0890 1.5187 42 1 -4.5161 3.4478 3.1800 43 1 -3.5717 6.0823 2.3653 44 1 -3.7429 5.4428 4.0273 45 1 -1.4484 6.7559 1.8041 46 1 -1.2942 7.1493 3.5332 47 1 -0.0096 6.2313 2.7113 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132329583.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:38 Heat of formation + Delta-G solvation = -54.858143 kcal Electronic energy + Delta-G solvation = -24496.499297 eV Core-core repulsion = 21292.286354 eV Total energy + Delta-G solvation = -3204.212943 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.49751 -39.70704 -36.81804 -34.71513 -34.29282 -33.55074 -32.75087 -29.92323 -29.33247 -28.74030 -25.68469 -24.75443 -24.39238 -22.28058 -21.32215 -21.06836 -20.14793 -19.01536 -17.87772 -17.43512 -16.90659 -16.58182 -15.92454 -15.75652 -15.46594 -14.83778 -14.77173 -14.68330 -14.16034 -13.96548 -13.72373 -13.66114 -13.65624 -13.32577 -13.16712 -12.96950 -12.86042 -12.69305 -12.50844 -12.44948 -12.28023 -12.20728 -11.88719 -11.87452 -11.66239 -11.55102 -11.29577 -11.20610 -11.15253 -10.84139 -10.25099 -9.53877 -9.24078 -8.38072 -6.42537 1.28638 1.33163 1.43636 1.98753 2.27397 2.42754 2.99977 3.18610 3.64885 3.80638 4.02040 4.06406 4.18187 4.21467 4.25370 4.34835 4.42425 4.47363 4.50144 4.58767 4.68023 4.71568 4.76180 4.81417 4.88260 4.90811 4.94816 5.00678 5.08670 5.11147 5.17723 5.20205 5.29384 5.30408 5.32115 5.39892 5.43387 5.46858 5.58269 5.69804 5.89447 6.08355 6.14888 6.23157 6.62426 7.07584 7.24019 7.67816 8.77125 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024388 B = 0.005051 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.846474 B = 5542.289466 C = 5856.074697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.125 4.125 3 C 0.250 3.750 4 H 0.022 0.978 5 C -0.524 4.524 6 H 0.055 0.945 7 C 0.033 3.967 8 N -0.933 5.933 9 Si 0.923 3.077 10 H -0.281 1.281 11 H -0.280 1.280 12 H -0.249 1.249 13 N -0.708 5.708 14 C 0.504 3.496 15 O -0.552 6.552 16 C 0.058 3.942 17 H 0.106 0.894 18 C -0.170 4.170 19 N -0.501 5.501 20 C 0.053 3.947 21 H 0.070 0.930 22 C -0.128 4.128 23 C -0.118 4.118 24 C -0.113 4.113 25 C 0.054 3.946 26 H 0.067 0.933 27 C -0.135 4.135 28 H 0.056 0.944 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.269 0.731 34 H 0.400 0.600 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.037 0.963 41 H 0.060 0.940 42 H 0.084 0.916 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.047 0.953 46 H 0.079 0.921 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.745 4.747 12.683 22.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.164 4.164 3 C 0.145 3.855 4 H 0.040 0.960 5 C -0.563 4.563 6 H 0.073 0.927 7 C -0.167 4.167 8 N -0.572 5.572 9 Si 0.749 3.251 10 H -0.207 1.207 11 H -0.205 1.205 12 H -0.173 1.173 13 N -0.359 5.359 14 C 0.290 3.710 15 O -0.431 6.431 16 C -0.055 4.055 17 H 0.124 0.876 18 C -0.228 4.228 19 N -0.226 5.226 20 C -0.055 4.055 21 H 0.088 0.912 22 C -0.186 4.186 23 C -0.156 4.156 24 C -0.151 4.151 25 C -0.054 4.054 26 H 0.085 0.915 27 C -0.192 4.192 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.234 0.766 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.067 0.933 46 H 0.098 0.902 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.033 4.922 11.294 21.840 hybrid contribution 0.717 -0.339 -0.180 0.814 sum -17.316 4.583 11.114 21.080 Atomic orbital electron populations 1.21831 0.95648 1.00058 1.01332 1.22015 0.95219 0.98193 1.00962 1.18688 0.91954 0.89537 0.85298 0.95971 1.21263 0.90206 1.50849 0.93948 0.92674 1.25555 0.95279 0.93853 1.02007 1.69984 1.07735 1.51221 1.28232 0.86133 0.79656 0.79093 0.80268 1.20676 1.20518 1.17271 1.46248 1.16871 1.55770 1.16971 1.20863 0.81242 0.78653 0.90257 1.90652 1.56359 1.60038 1.36013 1.21683 0.94241 0.97354 0.92199 0.87594 1.22297 1.03883 0.99129 0.97534 1.65241 0.99950 1.10314 1.47130 1.22825 0.91018 0.93820 0.97812 0.91191 1.21847 1.00526 0.99278 0.96933 1.22345 0.96301 0.95509 1.01415 1.22329 0.93237 0.97540 1.02010 1.22763 0.96251 0.92387 0.93951 0.91531 1.21724 0.99691 0.96061 1.01754 0.92545 0.94654 0.92905 0.93519 0.92125 0.92196 0.76617 0.90427 0.92235 0.89643 0.92527 0.92952 0.94333 0.92082 0.89721 0.91365 0.89269 0.93335 0.90235 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.94 8.08 71.98 0.58 -4.36 16 2 C -0.12 -5.27 5.42 30.59 0.17 -5.11 16 3 C 0.25 11.66 1.88 44.24 0.08 11.74 16 4 H 0.02 1.16 5.26 -2.38 -0.01 1.15 16 5 C -0.52 -28.43 9.05 25.60 0.23 -28.20 16 6 H 0.06 3.18 8.06 -2.91 -0.02 3.15 16 7 C 0.03 1.88 5.47 84.65 0.46 2.34 16 8 N -0.93 -56.23 13.96 21.45 0.30 -55.93 16 9 Si 0.92 45.34 26.32 68.60 1.81 47.15 16 10 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.25 -11.74 6.13 99.48 0.61 -11.13 16 13 N -0.71 -27.43 4.92 -446.12 -2.19 -29.62 16 14 C 0.50 18.23 4.98 87.65 0.44 18.66 16 15 O -0.55 -23.42 9.88 -3.02 -0.03 -23.45 16 16 C 0.06 1.55 2.63 44.17 0.12 1.66 16 17 H 0.11 2.66 7.02 -2.38 -0.02 2.65 16 18 C -0.17 -3.49 7.70 71.98 0.55 -2.94 16 19 N -0.50 -13.09 4.40 -811.57 -3.57 -16.66 16 20 C 0.05 1.26 2.38 45.06 0.11 1.36 16 21 H 0.07 1.49 5.19 -2.39 -0.01 1.48 16 22 C -0.13 -3.76 7.66 71.98 0.55 -3.21 16 23 C -0.12 -2.20 6.55 31.49 0.21 -1.99 16 24 C -0.11 -1.87 6.55 31.49 0.21 -1.66 16 25 C 0.05 1.05 2.71 45.06 0.12 1.17 16 26 H 0.07 1.10 6.75 -2.39 -0.02 1.08 16 27 C -0.13 -2.61 9.40 71.98 0.68 -1.94 16 28 H 0.06 2.03 4.25 -2.39 -0.01 2.02 16 29 H 0.03 1.45 7.53 -2.39 -0.02 1.43 16 30 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.05 2.07 6.71 -2.39 -0.02 2.05 16 32 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 34 H 0.40 13.81 8.59 -92.71 -0.80 13.01 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.34 6.73 -2.39 -0.02 1.32 16 37 H 0.08 1.37 6.60 -2.39 -0.02 1.36 16 38 H 0.06 1.89 3.77 -2.39 -0.01 1.88 16 39 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.04 1.33 7.75 -2.39 -0.02 1.31 16 41 H 0.06 1.26 7.86 -2.38 -0.02 1.25 16 42 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.07 1.18 7.78 -2.39 -0.02 1.16 16 44 H 0.09 1.05 8.14 -2.38 -0.02 1.04 16 45 H 0.05 1.08 8.03 -2.39 -0.02 1.06 16 46 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 47 H 0.04 0.96 7.23 -2.39 -0.02 0.95 16 Total: -1.00 -65.82 340.69 0.88 -64.95 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.06 Total: 26.02 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 4.50 Total: -12.45 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -5.46 Total: -102.21 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.03 Total: -23.45 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.81 Total: 47.15 kcal Total: -65.82 0.88 -64.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132329583.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.088 kcal (2) G-P(sol) polarization free energy of solvation -65.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds