Wall clock time and date at job start Tue Mar 31 2020 05:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.46921 * 2 1 4 4 H 1.08996 * 109.49883 * 54.99933 * 3 2 1 5 5 C 1.53119 * 109.50112 * 294.92143 * 3 2 1 6 6 C 1.53123 * 109.15928 * 182.36637 * 5 3 2 7 7 C 1.53035 * 109.27741 * 57.65380 * 6 5 3 8 8 N 1.46853 * 109.52081 * 300.81880 * 7 6 5 9 9 C 1.46906 * 110.99486 * 185.84075 * 8 7 6 10 10 C 1.52999 * 109.46999 * 298.72993 * 9 8 7 11 11 C 1.52995 * 109.47264 * 58.73550 * 9 8 7 12 12 C 1.53001 * 109.46723 * 178.73429 * 9 8 7 13 13 N 1.46498 * 109.47366 * 305.39809 * 12 9 8 14 14 C 1.34772 * 120.00054 * 185.02306 * 13 12 9 15 15 O 1.21682 * 120.00396 * 359.97438 * 14 13 12 16 16 C 1.46383 * 119.99847 * 179.97438 * 14 13 12 17 17 H 1.07999 * 119.99922 * 359.97438 * 16 14 13 18 18 C 1.40045 * 119.99762 * 179.97438 * 16 14 13 19 19 N 1.30674 * 120.00223 * 0.02562 * 18 16 14 20 20 Si 1.86805 * 119.99777 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47102 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47056 * 120.00269 * 20 18 16 23 23 H 1.48505 * 109.46880 * 240.00141 * 20 18 16 24 24 C 1.46846 * 111.19515 * 61.74747 * 8 7 6 25 25 H 1.08998 * 109.46605 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47028 * 300.00107 * 1 2 3 27 27 H 1.09002 * 109.47070 * 59.99857 * 1 2 3 28 28 H 1.09002 * 109.46884 * 240.00361 * 2 1 3 29 29 H 1.09003 * 109.47331 * 119.99661 * 2 1 3 30 30 H 1.08995 * 109.52215 * 302.26935 * 5 3 2 31 31 H 1.09000 * 109.52223 * 62.39991 * 5 3 2 32 32 H 1.08995 * 109.50275 * 177.59810 * 6 5 3 33 33 H 1.09000 * 109.49847 * 297.67592 * 6 5 3 34 34 H 1.08994 * 109.46717 * 60.83724 * 7 6 5 35 35 H 1.09003 * 109.46005 * 180.81362 * 7 6 5 36 36 H 1.09005 * 109.46993 * 60.00909 * 10 9 8 37 37 H 1.09005 * 109.46927 * 179.97438 * 10 9 8 38 38 H 1.09000 * 109.47635 * 300.00248 * 10 9 8 39 39 H 1.08998 * 109.47147 * 59.99666 * 11 9 8 40 40 H 1.09007 * 109.47065 * 179.97438 * 11 9 8 41 41 H 1.08995 * 109.46853 * 299.99609 * 11 9 8 42 42 H 1.09006 * 109.47132 * 65.39917 * 12 9 8 43 43 H 1.09003 * 109.47131 * 185.39414 * 12 9 8 44 44 H 0.97007 * 119.99786 * 5.01506 * 13 12 9 45 45 H 0.97006 * 120.00001 * 179.97438 * 19 18 16 46 46 H 1.09009 * 109.45857 * 178.23752 * 24 8 7 47 47 H 1.08998 * 109.46304 * 58.27272 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6057 1.9820 0.8416 5 6 1.6370 2.1272 -1.3090 6 6 2.2015 3.5505 -1.3262 7 6 3.7222 3.4929 -1.1645 8 7 4.0562 2.8299 0.1026 9 6 5.5021 2.8796 0.3574 10 6 6.2427 2.1440 -0.7612 11 6 5.9625 4.3380 0.4008 12 6 5.8069 2.2084 1.6981 13 7 4.9991 2.8301 2.7503 14 6 5.1743 2.4685 4.0368 15 8 6.0032 1.6253 4.3243 16 6 4.3675 3.0901 5.0881 17 1 3.6321 3.8387 4.8330 18 6 4.5492 2.7139 6.4248 19 7 5.4393 1.8084 6.7336 20 14 3.5191 3.5067 7.7665 21 1 2.5911 4.4943 7.1596 22 1 2.7368 2.4607 8.4730 23 1 4.4111 4.1955 8.7335 24 6 3.5654 1.4461 0.1232 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0387 1.5658 -2.1524 31 1 0.5500 2.1646 -1.3808 32 1 1.9541 4.0286 -2.2739 33 1 1.7691 4.1233 -0.5058 34 1 4.1545 2.9318 -1.9930 35 1 4.1257 4.5055 -1.1619 36 1 6.0255 2.6222 -1.7164 37 1 7.3156 2.1812 -0.5723 38 1 5.9147 1.1049 -0.7921 39 1 5.4349 4.8620 1.1977 40 1 7.0354 4.3748 0.5904 41 1 5.7454 4.8161 -0.5543 42 1 5.5676 1.1468 1.6357 43 1 6.8645 2.3292 1.9328 44 1 4.3381 3.5021 2.5211 45 1 5.5655 1.5482 7.6595 46 1 3.8551 0.9720 1.0611 47 1 3.9985 0.8946 -0.7113 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153806163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:50 Heat of formation + Delta-G solvation = -56.883598 kcal Electronic energy + Delta-G solvation = -23982.495283 eV Core-core repulsion = 20778.194510 eV Total energy + Delta-G solvation = -3204.300773 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.97303 -37.30252 -36.14245 -33.55454 -32.47949 -31.62690 -30.66708 -29.06485 -27.14793 -26.84433 -25.03359 -24.15281 -23.04882 -21.32509 -19.67586 -19.53091 -18.53207 -17.01536 -16.19387 -15.24718 -15.02061 -14.73333 -14.49842 -14.26510 -14.02681 -13.89474 -13.76671 -13.35419 -13.21451 -12.80854 -12.58530 -12.19527 -12.07616 -12.04312 -11.85509 -11.77682 -11.34539 -11.17784 -11.12956 -10.99258 -10.92901 -10.78006 -10.71993 -10.53687 -10.42415 -10.29168 -10.09749 -9.99990 -9.83881 -8.76859 -8.02743 -7.48409 -7.27247 -6.08665 -4.52095 3.18368 3.26517 3.31313 3.96130 4.19385 4.69822 4.77551 4.81494 4.87716 4.98032 5.11852 5.13774 5.25801 5.28643 5.32348 5.48138 5.52305 5.60377 5.63588 5.65263 5.73589 5.75650 5.83712 5.89412 5.91464 5.95471 5.97857 6.04165 6.07360 6.14591 6.16670 6.19408 6.22317 6.27912 6.41667 6.45134 6.56807 6.60240 6.64479 7.37404 7.38068 7.53465 8.12506 8.30742 8.48549 9.13385 9.74730 10.71617 10.92638 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014881 B = 0.005232 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.100692 B = 5350.301316 C = 6289.429407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.083 4.083 4 H 0.081 0.919 5 C -0.114 4.114 6 C -0.116 4.116 7 C 0.051 3.949 8 N -0.518 5.518 9 C 0.096 3.904 10 C -0.177 4.177 11 C -0.136 4.136 12 C 0.149 3.851 13 N -0.754 5.754 14 C 0.555 3.445 15 O -0.587 6.587 16 C -0.542 4.542 17 H 0.066 0.934 18 C 0.088 3.912 19 N -0.771 5.771 20 Si 0.904 3.096 21 H -0.264 1.264 22 H -0.277 1.277 23 H -0.277 1.277 24 C 0.058 3.942 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.042 0.958 43 H 0.052 0.948 44 H 0.388 0.612 45 H 0.265 0.735 46 H 0.086 0.914 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.538 1.911 -17.320 18.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.102 4.102 4 H 0.100 0.900 5 C -0.151 4.151 6 C -0.154 4.154 7 C -0.077 4.077 8 N -0.242 5.242 9 C 0.006 3.994 10 C -0.236 4.236 11 C -0.194 4.194 12 C 0.023 3.977 13 N -0.410 5.410 14 C 0.358 3.642 15 O -0.471 6.471 16 C -0.580 4.580 17 H 0.085 0.915 18 C -0.131 4.131 19 N -0.400 5.400 20 Si 0.729 3.271 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.203 1.203 24 C -0.070 4.070 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.221 0.779 45 H 0.076 0.924 46 H 0.104 0.896 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.057 1.437 -16.587 17.716 hybrid contribution -0.358 0.181 -0.147 0.427 sum -6.415 1.618 -16.734 17.994 Atomic orbital electron populations 1.21784 0.95958 1.01218 1.01808 1.21523 0.95820 0.96485 1.01889 1.21196 0.95154 0.95607 0.98265 0.90047 1.21659 1.00245 0.95847 0.97380 1.21576 0.95265 0.97116 1.01442 1.22159 0.95821 0.99313 0.90425 1.62014 1.12966 1.16697 1.32513 1.21344 0.86623 0.96303 0.95081 1.22412 1.01440 1.00826 0.98914 1.21862 1.01132 0.94645 1.01728 1.20872 0.95757 0.95691 0.85421 1.45939 1.42692 1.46251 1.06080 1.18201 0.83390 0.82189 0.80395 1.90585 1.38592 1.35967 1.81928 1.20918 1.21938 1.24394 0.90723 0.91535 1.25691 0.94320 0.93775 0.99323 1.70046 1.27499 1.24112 1.18363 0.86382 0.80232 0.79601 0.80912 1.18809 1.20287 1.20290 1.22197 0.94377 0.89000 1.01421 0.93139 0.92546 0.92848 0.92546 0.91649 0.92815 0.92012 0.92187 0.91033 0.95247 0.90618 0.92572 0.91905 0.92434 0.91174 0.92293 0.93058 0.94022 0.93025 0.77912 0.92388 0.89597 0.95383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.67 37.16 0.36 -1.16 16 2 C -0.12 -1.36 5.41 -26.72 -0.14 -1.51 16 3 C -0.08 -1.03 2.35 -90.54 -0.21 -1.25 16 4 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 5 C -0.11 -1.19 4.98 -26.61 -0.13 -1.32 16 6 C -0.12 -1.21 6.09 -26.65 -0.16 -1.37 16 7 C 0.05 0.58 4.66 -3.83 -0.02 0.56 16 8 N -0.52 -7.14 3.83 -219.02 -0.84 -7.98 16 9 C 0.10 1.40 0.37 -131.60 -0.05 1.35 16 10 C -0.18 -2.22 7.79 37.16 0.29 -1.93 16 11 C -0.14 -1.85 8.09 37.15 0.30 -1.55 16 12 C 0.15 2.90 3.94 -4.04 -0.02 2.88 16 13 N -0.75 -17.10 5.08 -61.72 -0.31 -17.41 16 14 C 0.55 16.03 7.75 -12.99 -0.10 15.93 16 15 O -0.59 -19.36 15.02 5.21 0.08 -19.28 16 16 C -0.54 -15.63 9.54 -35.63 -0.34 -15.97 16 17 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 18 C 0.09 2.50 5.50 -17.37 -0.10 2.41 16 19 N -0.77 -23.59 11.83 55.55 0.66 -22.94 16 20 Si 0.90 20.59 29.56 -169.99 -5.02 15.57 16 21 H -0.26 -5.82 7.11 56.52 0.40 -5.41 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 C 0.06 0.81 3.95 -3.84 -0.02 0.80 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.49 6.62 -51.93 -0.34 0.14 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.60 6.69 -51.93 -0.35 0.25 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.03 0.33 6.65 -51.93 -0.35 -0.01 16 35 H 0.08 0.84 5.97 -51.93 -0.31 0.53 16 36 H 0.06 0.63 6.56 -51.93 -0.34 0.28 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.74 6.60 -51.93 -0.34 0.39 16 39 H 0.07 1.06 7.32 -51.93 -0.38 0.68 16 40 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 41 H 0.05 0.59 6.26 -51.93 -0.32 0.26 16 42 H 0.04 0.86 6.55 -51.93 -0.34 0.52 16 43 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.39 8.17 7.40 -40.82 -0.30 7.87 16 45 H 0.27 7.36 8.29 -40.82 -0.34 7.03 16 46 H 0.09 1.47 6.05 -51.92 -0.31 1.16 16 47 H 0.03 0.38 6.68 -51.93 -0.35 0.03 16 LS Contribution 351.76 15.07 5.30 5.30 Total: -1.00 -33.11 351.76 -8.71 -41.82 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -8.23 Total: 7.05 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -0.34 Total: -2.13 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: -0.49 Total: -48.33 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.08 Total: -19.28 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.11 -8.71 -41.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153806163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.061 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds