Wall clock time and date at job start Tue Mar 31 2020 05:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47124 * 2 1 4 4 H 1.08996 * 109.50405 * 304.92359 * 3 2 1 5 5 C 1.53120 * 109.50190 * 65.00224 * 3 2 1 6 6 C 1.53118 * 109.16184 * 177.63320 * 5 3 2 7 7 C 1.53041 * 109.27690 * 302.34581 * 6 5 3 8 8 N 1.46849 * 109.52442 * 59.18044 * 7 6 5 9 9 C 1.46899 * 110.99825 * 174.16349 * 8 7 6 10 10 C 1.53004 * 109.47369 * 62.94248 * 9 8 7 11 11 C 1.52997 * 109.46915 * 182.94191 * 9 8 7 12 12 C 1.52995 * 109.46901 * 302.93968 * 9 8 7 13 13 N 1.46505 * 109.47614 * 305.40066 * 12 9 8 14 14 C 1.34767 * 120.00465 * 185.02425 * 13 12 9 15 15 O 1.21695 * 120.00191 * 359.97438 * 14 13 12 16 16 C 1.46368 * 120.00475 * 179.97438 * 14 13 12 17 17 H 1.08005 * 119.99336 * 359.97438 * 16 14 13 18 18 C 1.40049 * 120.00689 * 180.02562 * 16 14 13 19 19 N 1.30673 * 119.99444 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00374 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46953 * 59.99762 * 20 18 16 22 22 H 1.48495 * 109.46972 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.46902 * 299.99880 * 20 18 16 24 24 C 1.46847 * 111.19226 * 298.25426 * 8 7 6 25 25 H 1.08996 * 109.47171 * 300.00126 * 1 2 3 26 26 H 1.09005 * 109.46845 * 59.99803 * 1 2 3 27 27 H 1.09004 * 109.47131 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46730 * 240.00215 * 2 1 3 29 29 H 1.09001 * 109.47094 * 120.00640 * 2 1 3 30 30 H 1.09000 * 109.51968 * 297.53947 * 5 3 2 31 31 H 1.09004 * 109.52297 * 57.72598 * 5 3 2 32 32 H 1.08997 * 109.50350 * 62.28280 * 6 5 3 33 33 H 1.09001 * 109.50585 * 182.40362 * 6 5 3 34 34 H 1.08994 * 109.46298 * 299.16122 * 7 6 5 35 35 H 1.09005 * 109.45091 * 179.18737 * 7 6 5 36 36 H 1.08999 * 109.46864 * 60.00096 * 10 9 8 37 37 H 1.08993 * 109.46758 * 180.02562 * 10 9 8 38 38 H 1.09003 * 109.46948 * 299.99873 * 10 9 8 39 39 H 1.09002 * 109.47165 * 59.99455 * 11 9 8 40 40 H 1.09004 * 109.47394 * 179.97438 * 11 9 8 41 41 H 1.08999 * 109.47480 * 300.00003 * 11 9 8 42 42 H 1.09000 * 109.47530 * 65.40203 * 12 9 8 43 43 H 1.09005 * 109.47419 * 185.39859 * 12 9 8 44 44 H 0.97000 * 119.99241 * 5.01634 * 13 12 9 45 45 H 0.97005 * 119.99967 * 180.02562 * 19 18 16 46 46 H 1.08998 * 109.46722 * 301.72862 * 24 8 7 47 47 H 1.09005 * 109.45023 * 181.75303 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9816 -0.8424 5 6 1.6353 2.1277 1.3081 6 6 2.1998 3.5510 1.3255 7 6 3.7208 3.4932 1.1658 8 7 4.0565 2.8297 -0.1005 9 6 5.5027 2.8792 -0.3535 10 6 6.2391 2.1083 0.7440 11 6 5.8046 2.2447 -1.7126 12 6 5.9705 4.3358 -0.3554 13 7 5.1752 5.1031 -1.3172 14 6 5.4773 6.3929 -1.5647 15 8 6.4105 6.9206 -0.9889 16 6 4.6830 7.1593 -2.5261 17 1 3.8550 6.6908 -3.0374 18 6 4.9973 8.4995 -2.7836 19 7 5.9994 9.0660 -2.1653 20 14 3.9840 9.4773 -4.0111 21 1 2.5692 9.5204 -3.5620 22 1 4.5164 10.8605 -4.1020 23 1 4.0605 8.8282 -5.3445 24 6 3.5656 1.4459 -0.1212 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 0.5483 2.1661 1.3781 31 1 2.0360 1.5666 2.1524 32 1 1.7692 4.1233 0.5039 33 1 1.9513 4.0295 2.2728 34 1 4.1520 2.9325 1.9951 35 1 4.1242 4.5059 1.1633 36 1 5.9057 1.0706 0.7453 37 1 7.3121 2.1455 0.5565 38 1 6.0240 2.5603 1.7123 39 1 5.2799 2.7938 -2.4945 40 1 6.8776 2.2818 -1.9006 41 1 5.4712 1.2070 -1.7113 42 1 5.8437 4.7596 0.6408 43 1 7.0226 4.3792 -0.6374 44 1 4.4311 4.6825 -1.7760 45 1 6.2169 9.9944 -2.3434 46 1 3.9975 0.8948 0.7141 47 1 3.8565 0.9715 -1.0585 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153806272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:53 Heat of formation + Delta-G solvation = -56.885971 kcal Electronic energy + Delta-G solvation = -23824.067208 eV Core-core repulsion = 20619.766332 eV Total energy + Delta-G solvation = -3204.300876 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.98473 -37.35792 -36.13928 -33.48083 -32.59948 -31.85460 -30.23660 -29.34842 -27.15972 -26.83980 -24.83478 -24.46612 -22.97251 -21.37086 -19.76093 -19.52474 -18.53133 -17.01786 -16.19349 -15.25684 -15.01528 -14.82837 -14.41336 -14.29648 -14.10125 -13.97650 -13.81639 -13.40394 -13.09305 -12.81345 -12.69519 -12.31181 -12.13544 -12.03114 -11.88653 -11.57673 -11.46083 -11.26042 -11.12929 -11.01886 -10.95250 -10.85209 -10.67178 -10.55201 -10.48706 -10.31187 -10.14860 -9.99280 -9.87454 -8.75154 -8.02749 -7.48690 -7.27184 -6.08188 -4.52064 3.21792 3.26189 3.28390 3.95343 4.19503 4.68339 4.70355 4.75104 4.83544 4.99266 5.03988 5.17448 5.18569 5.25346 5.27723 5.44949 5.51635 5.55062 5.59608 5.63817 5.71466 5.74498 5.78081 5.82859 5.86276 5.90687 5.94723 6.00474 6.03357 6.06636 6.14601 6.18818 6.23492 6.27746 6.35772 6.44709 6.53557 6.59009 6.63734 7.37270 7.38163 7.53375 8.12411 8.30738 8.48177 9.13281 9.74882 10.71980 10.92806 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018478 B = 0.004503 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.987853 B = 6216.159211 C = 6965.642831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.085 4.085 4 H 0.079 0.921 5 C -0.113 4.113 6 C -0.116 4.116 7 C 0.052 3.948 8 N -0.518 5.518 9 C 0.096 3.904 10 C -0.177 4.177 11 C -0.136 4.136 12 C 0.149 3.851 13 N -0.754 5.754 14 C 0.555 3.445 15 O -0.588 6.588 16 C -0.544 4.544 17 H 0.066 0.934 18 C 0.088 3.912 19 N -0.771 5.771 20 Si 0.905 3.095 21 H -0.269 1.269 22 H -0.282 1.282 23 H -0.269 1.269 24 C 0.057 3.943 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.028 0.972 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.042 0.958 43 H 0.052 0.948 44 H 0.388 0.612 45 H 0.267 0.733 46 H 0.030 0.970 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.045 -17.721 4.975 20.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.104 4.104 4 H 0.098 0.902 5 C -0.151 4.151 6 C -0.154 4.154 7 C -0.076 4.076 8 N -0.242 5.242 9 C 0.007 3.993 10 C -0.236 4.236 11 C -0.194 4.194 12 C 0.023 3.977 13 N -0.410 5.410 14 C 0.359 3.641 15 O -0.471 6.471 16 C -0.581 4.581 17 H 0.084 0.916 18 C -0.131 4.131 19 N -0.400 5.400 20 Si 0.730 3.270 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.194 1.194 24 C -0.071 4.071 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.221 0.779 45 H 0.077 0.923 46 H 0.048 0.952 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.460 -16.896 5.058 19.149 hybrid contribution -0.409 -0.184 -0.079 0.455 sum -7.868 -17.080 4.979 19.453 Atomic orbital electron populations 1.21796 0.95901 1.01191 1.02034 1.21522 0.95894 0.96515 1.01621 1.21221 0.95080 0.95350 0.98725 0.90215 1.21660 1.00255 0.96177 0.97009 1.21573 0.95317 0.96603 1.01932 1.22158 0.95798 1.00120 0.89497 1.62012 1.12917 1.15479 1.33769 1.21342 0.86663 0.96227 0.95102 1.22411 1.01425 1.00159 0.99596 1.21864 1.01576 0.99572 0.96364 1.20872 0.95384 0.87598 0.93885 1.45935 1.35708 1.12903 1.46421 1.18180 0.84311 0.79061 0.82588 1.90588 1.32649 1.69541 1.54327 1.20850 1.16137 0.95995 1.25123 0.91623 1.25686 0.94308 0.97766 0.95315 1.70025 1.23245 1.11839 1.34912 0.86487 0.80565 0.78653 0.81317 1.19363 1.20699 1.19365 1.22193 0.94519 0.89741 1.00670 0.92572 0.92649 0.93160 0.92100 0.92428 0.92024 0.92805 0.90801 0.91981 0.95398 0.89593 0.92576 0.91903 0.92430 0.91176 0.92291 0.93072 0.94006 0.93017 0.77917 0.92271 0.95210 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.67 37.16 0.36 -0.85 16 2 C -0.12 -1.01 5.41 -26.73 -0.14 -1.16 16 3 C -0.08 -0.88 2.35 -90.54 -0.21 -1.10 16 4 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 5 C -0.11 -1.18 4.98 -26.61 -0.13 -1.32 16 6 C -0.12 -1.45 6.09 -26.65 -0.16 -1.61 16 7 C 0.05 0.73 4.67 -3.83 -0.02 0.71 16 8 N -0.52 -7.14 3.83 -219.01 -0.84 -7.98 16 9 C 0.10 1.40 0.37 -131.60 -0.05 1.35 16 10 C -0.18 -2.21 7.79 37.16 0.29 -1.93 16 11 C -0.14 -1.86 8.09 37.16 0.30 -1.55 16 12 C 0.15 2.90 3.94 -4.04 -0.02 2.88 16 13 N -0.75 -17.11 5.08 -61.72 -0.31 -17.42 16 14 C 0.56 16.06 7.75 -12.99 -0.10 15.96 16 15 O -0.59 -19.38 15.02 5.19 0.08 -19.31 16 16 C -0.54 -15.69 9.54 -35.63 -0.34 -16.03 16 17 H 0.07 1.75 7.85 -52.48 -0.41 1.34 16 18 C 0.09 2.52 5.50 -17.37 -0.10 2.42 16 19 N -0.77 -23.60 11.83 55.55 0.66 -22.95 16 20 Si 0.90 20.59 29.56 -169.99 -5.02 15.57 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 24 C 0.06 0.65 3.94 -3.83 -0.02 0.63 16 25 H 0.06 0.44 6.62 -51.93 -0.34 0.10 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.59 6.69 -51.93 -0.35 0.25 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.03 0.37 6.68 -51.93 -0.35 0.02 16 35 H 0.09 1.47 6.05 -51.93 -0.31 1.15 16 36 H 0.06 0.63 6.56 -51.93 -0.34 0.29 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.74 6.60 -51.93 -0.34 0.39 16 39 H 0.07 1.06 7.32 -51.93 -0.38 0.68 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.05 0.59 6.26 -51.93 -0.32 0.26 16 42 H 0.04 0.87 6.55 -51.93 -0.34 0.53 16 43 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.39 8.17 7.40 -40.82 -0.30 7.86 16 45 H 0.27 7.44 8.29 -40.82 -0.34 7.10 16 46 H 0.03 0.34 6.65 -51.93 -0.35 -0.01 16 47 H 0.08 0.84 5.97 -51.93 -0.31 0.53 16 LS Contribution 351.76 15.07 5.30 5.30 Total: -1.00 -33.09 351.76 -8.71 -41.80 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -8.23 Total: 6.56 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -0.34 Total: -1.57 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.49 Total: -48.35 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.08 Total: -19.31 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.09 -8.71 -41.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153806272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.089 kcal (2) G-P(sol) polarization free energy of solvation -33.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds