Wall clock time and date at job start Tue Mar 31 2020 05:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47383 * 2 1 4 4 N 1.46907 * 109.47126 * 239.99547 * 2 1 3 5 5 C 1.46897 * 110.99870 * 60.00256 * 4 2 1 6 6 C 1.52995 * 109.47422 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47706 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99483 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00276 * 180.02562 * 7 6 5 10 10 N 1.31508 * 120.00199 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99963 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47503 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47361 * 119.99814 * 11 9 7 14 14 H 1.48497 * 109.47200 * 239.99852 * 11 9 7 15 15 C 1.50706 * 109.46894 * 120.00068 * 2 1 3 16 16 O 1.21281 * 119.99699 * 264.99617 * 15 2 1 17 17 N 1.34773 * 120.00080 * 85.00108 * 15 2 1 18 18 C 1.46506 * 119.99969 * 180.02562 * 17 15 2 19 19 C 1.52998 * 109.47237 * 179.72043 * 18 17 15 20 20 C 1.54258 * 110.03455 * 292.90744 * 19 18 17 21 21 C 1.54967 * 104.16246 * 217.13741 * 20 19 18 22 22 C 1.54887 * 102.77367 * 37.88475 * 21 20 19 23 23 C 1.53874 * 110.03277 * 175.68586 * 19 18 17 24 24 H 1.09000 * 109.47196 * 300.00422 * 1 2 3 25 25 H 1.09002 * 109.46922 * 60.00081 * 1 2 3 26 26 H 1.09007 * 109.47428 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47305 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47025 * 299.99856 * 3 2 1 29 29 H 1.09000 * 109.47299 * 59.99641 * 3 2 1 30 30 H 1.00898 * 110.99637 * 296.04855 * 4 2 1 31 31 H 1.09004 * 109.46874 * 300.00003 * 5 4 2 32 32 H 1.09004 * 109.46805 * 59.99511 * 5 4 2 33 33 H 1.08998 * 109.46975 * 300.00618 * 6 5 4 34 34 H 1.09011 * 109.46665 * 59.99956 * 6 5 4 35 35 H 0.97006 * 120.00351 * 180.02562 * 10 9 7 36 36 H 0.97005 * 120.00161 * 359.72088 * 17 15 2 37 37 H 1.09001 * 109.46512 * 299.72412 * 18 17 15 38 38 H 1.08998 * 109.47174 * 59.71534 * 18 17 15 39 39 H 1.09006 * 110.01511 * 54.29951 * 19 18 17 40 40 H 1.09005 * 110.48463 * 335.78619 * 20 19 18 41 41 H 1.09006 * 110.48910 * 98.42335 * 20 19 18 42 42 H 1.09007 * 110.71710 * 279.57479 * 21 20 19 43 43 H 1.09001 * 110.92470 * 156.29521 * 21 20 19 44 44 H 1.09006 * 110.48348 * 203.40513 * 22 21 20 45 45 H 1.08996 * 110.59816 * 80.82043 * 22 21 20 46 46 H 1.09001 * 110.03624 * 238.57082 * 23 19 18 47 47 H 1.09006 * 110.03109 * 359.95719 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 1.5486 -0.0266 -2.4211 6 6 2.0782 -0.7744 -3.6463 7 6 1.5945 -0.0915 -4.8996 8 1 0.9720 0.7883 -4.8292 9 6 1.9467 -0.5898 -6.1359 10 7 2.7051 -1.6607 -6.2216 11 14 1.3477 0.2572 -7.6894 12 1 0.5164 1.4320 -7.3236 13 1 2.5151 0.7062 -8.4899 14 1 0.5350 -0.6937 -8.4897 15 6 2.0322 -0.7105 1.2305 16 8 2.3207 -0.0749 2.2224 17 7 2.1609 -2.0520 1.2287 18 6 2.6487 -2.7427 2.4252 19 6 2.6937 -4.2492 2.1617 20 6 1.2624 -4.7990 1.9922 21 6 1.3083 -6.1912 2.6713 22 6 2.2243 -5.9451 3.8957 23 6 3.3054 -4.9778 3.3711 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.7501 -1.6649 -1.1908 31 1 0.4587 -0.0267 -2.4378 32 1 1.9121 1.0010 -2.4378 33 1 3.1680 -0.7739 -3.6292 34 1 1.7150 -1.8021 -3.6296 35 1 2.9531 -2.0111 -7.0915 36 1 1.9264 -2.5607 0.4368 37 1 3.6498 -2.3861 2.6677 38 1 1.9785 -2.5398 3.2605 39 1 3.2808 -4.4540 1.2664 40 1 0.5434 -4.1527 2.4957 41 1 1.0140 -4.8971 0.9354 42 1 1.7475 -6.9320 2.0029 43 1 0.3131 -6.5021 2.9895 44 1 2.6770 -6.8796 4.2274 45 1 1.6625 -5.4848 4.7085 46 1 4.1888 -5.5368 3.0627 47 1 3.5709 -4.2580 4.1455 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155166511.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:24 Heat of formation + Delta-G solvation = -67.860528 kcal Electronic energy + Delta-G solvation = -22743.428757 eV Core-core repulsion = 19538.651989 eV Total energy + Delta-G solvation = -3204.776768 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.18860 -38.56978 -36.79265 -34.53713 -33.37758 -31.27865 -30.08778 -28.92953 -28.18110 -27.16677 -25.47710 -24.12011 -22.33134 -20.97368 -20.60277 -20.02625 -18.94346 -17.29931 -16.62605 -16.23413 -15.66978 -15.37890 -14.97539 -14.65898 -14.45388 -14.24353 -13.92829 -13.62110 -13.45378 -12.97763 -12.82685 -12.37312 -12.21315 -12.08916 -11.79458 -11.58020 -11.51031 -11.38138 -11.31393 -11.22297 -11.05819 -10.97905 -10.92387 -10.87640 -10.69290 -10.55421 -10.03378 -9.67066 -9.35816 -9.14478 -9.02310 -8.39657 -7.98384 -6.03515 -4.06087 2.76227 3.22718 3.28975 3.36795 3.40399 4.30620 4.33200 4.36958 4.43815 4.54857 4.86590 4.96228 5.09233 5.14042 5.16944 5.19789 5.24630 5.32967 5.36557 5.41867 5.55355 5.65237 5.65726 5.70521 5.75391 5.77300 5.83464 5.97008 5.97461 6.04342 6.06291 6.13649 6.15895 6.29770 6.36889 6.44529 6.52014 6.92888 7.28538 7.49707 7.64106 7.72814 7.84698 8.01672 8.31832 8.38640 9.01193 9.58153 11.07850 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017466 B = 0.003474 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.762014 B = 8058.321403 C = 9167.801216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.093 3.907 3 C -0.125 4.125 4 N -0.675 5.675 5 C 0.061 3.939 6 C 0.026 3.974 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.892 3.108 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.535 3.465 16 O -0.547 6.547 17 N -0.725 5.725 18 C 0.127 3.873 19 C -0.107 4.107 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.117 4.117 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.331 0.669 31 H 0.024 0.976 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.013 0.987 35 H 0.260 0.740 36 H 0.401 0.599 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.932 -6.821 18.598 20.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.002 4.002 3 C -0.183 4.183 4 N -0.307 5.307 5 C -0.067 4.067 6 C -0.012 4.012 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.143 4.143 10 N -0.532 5.532 11 Si 0.720 3.280 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.211 1.211 15 C 0.321 3.679 16 O -0.423 6.423 17 N -0.378 5.378 18 C 0.004 3.996 19 C -0.126 4.126 20 C -0.161 4.161 21 C -0.163 4.163 22 C -0.162 4.162 23 C -0.155 4.155 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.149 0.851 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.031 0.969 35 H 0.070 0.930 36 H 0.237 0.763 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.012 -6.148 19.208 20.268 hybrid contribution -1.299 -0.218 -1.388 1.914 sum -3.311 -6.366 17.820 19.211 Atomic orbital electron populations 1.22485 0.95201 1.02469 1.03467 1.21130 0.93641 0.96234 0.89183 1.21676 1.02163 0.92410 1.02028 1.60922 1.63084 1.05449 1.01279 1.22316 0.96626 0.99112 0.88617 1.19071 0.97282 0.95009 0.89816 1.21188 1.31534 1.12357 0.90906 0.92668 1.24991 0.95132 0.95030 0.99166 1.69975 1.36449 1.22419 1.24338 0.86541 0.78587 0.79554 0.83337 1.19757 1.20970 1.21054 1.20548 0.76377 0.81855 0.89079 1.90655 1.50163 1.66191 1.35295 1.46030 1.67701 1.07275 1.16745 1.21473 0.99752 0.90621 0.87775 1.22054 0.97312 0.93602 0.99586 1.22501 0.96064 0.96445 1.01055 1.22504 0.99600 0.97145 0.97019 1.22359 0.96966 0.99078 0.97843 1.22119 0.98340 0.98117 0.96937 0.91914 0.90407 0.92494 0.91670 0.91384 0.91817 0.85094 0.95761 0.91491 0.95615 0.96875 0.93034 0.76338 0.91627 0.91707 0.89948 0.91355 0.91311 0.91405 0.91666 0.91758 0.91695 0.91407 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 8.21 37.15 0.31 -2.02 16 2 C 0.09 1.38 0.91 -132.75 -0.12 1.26 16 3 C -0.12 -1.90 7.77 37.15 0.29 -1.61 16 4 N -0.67 -11.19 6.00 -101.14 -0.61 -11.80 16 5 C 0.06 1.19 4.84 -3.83 -0.02 1.18 16 6 C 0.03 0.64 5.23 -27.89 -0.15 0.49 16 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 10 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 11 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 C 0.54 8.14 6.71 -10.98 -0.07 8.07 16 16 O -0.55 -9.86 16.10 5.56 0.09 -9.77 16 17 N -0.72 -8.92 5.29 -60.29 -0.32 -9.24 16 18 C 0.13 1.38 4.73 -4.04 -0.02 1.36 16 19 C -0.11 -0.92 2.97 -89.51 -0.27 -1.19 16 20 C -0.12 -1.01 6.05 -25.03 -0.15 -1.16 16 21 C -0.13 -0.91 6.91 -24.70 -0.17 -1.08 16 22 C -0.12 -0.87 6.83 -25.07 -0.17 -1.04 16 23 C -0.12 -0.89 6.46 -25.61 -0.17 -1.05 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.08 1.06 6.40 -51.93 -0.33 0.73 16 26 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.07 1.01 6.40 -51.93 -0.33 0.68 16 29 H 0.06 0.92 7.87 -51.93 -0.41 0.51 16 30 H 0.33 5.04 7.03 -39.29 -0.28 4.76 16 31 H 0.02 0.46 6.30 -51.93 -0.33 0.13 16 32 H 0.07 1.34 6.30 -51.93 -0.33 1.01 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.01 0.34 8.14 -51.92 -0.42 -0.09 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.40 4.45 6.62 -40.82 -0.27 4.18 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.72 8.02 -51.93 -0.42 0.31 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.59 7.77 -51.93 -0.40 0.18 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.51 7.67 -51.93 -0.40 0.11 16 LS Contribution 366.01 15.07 5.52 5.52 Total: -1.00 -30.95 366.01 -9.26 -40.20 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -8.53 Total: 4.35 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -1.12 Total: -9.93 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: -0.19 Total: -46.66 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.95 -9.26 -40.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155166511.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.658 kcal (2) G-P(sol) polarization free energy of solvation -30.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds