Wall clock time and date at job start Tue Mar 31 2020 05:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47239 * 2 1 4 4 H 1.09000 * 109.70142 * 61.30847 * 3 2 1 5 5 C 1.52761 * 109.50774 * 301.19325 * 3 2 1 6 6 C 1.53047 * 109.38083 * 185.70371 * 5 3 2 7 7 C 1.53035 * 109.53546 * 61.23912 * 6 5 3 8 8 C 1.53197 * 109.31554 * 298.63374 * 7 6 5 9 9 N 1.46918 * 109.58872 * 181.66540 * 3 2 1 10 10 C 1.34781 * 120.62774 * 353.41658 * 9 3 2 11 11 O 1.21276 * 120.00356 * 354.19195 * 10 9 3 12 12 C 1.50701 * 119.99776 * 174.18505 * 10 9 3 13 13 N 1.46899 * 109.47246 * 180.02562 * 12 10 9 14 14 C 1.46900 * 111.00061 * 293.95909 * 13 12 10 15 15 C 1.46895 * 111.00256 * 170.00027 * 13 12 10 16 16 H 1.08998 * 109.47315 * 310.00338 * 15 13 12 17 17 C 1.53008 * 109.47205 * 70.00145 * 15 13 12 18 18 C 1.50702 * 109.47522 * 189.99874 * 15 13 12 19 19 H 1.08001 * 119.99796 * 0.02562 * 18 15 13 20 20 C 1.37873 * 120.00320 * 179.97438 * 18 15 13 21 21 N 1.31511 * 119.99929 * 0.02562 * 20 18 15 22 22 Si 1.86799 * 120.00099 * 180.02562 * 20 18 15 23 23 H 1.48500 * 109.47321 * 270.00352 * 22 20 18 24 24 H 1.48495 * 109.47174 * 30.00134 * 22 20 18 25 25 H 1.48500 * 109.47256 * 150.00304 * 22 20 18 26 26 H 1.09001 * 109.47311 * 65.08297 * 1 2 3 27 27 H 1.09003 * 109.47065 * 185.07938 * 1 2 3 28 28 H 1.08998 * 109.47480 * 305.08307 * 1 2 3 29 29 H 1.08999 * 109.46949 * 239.99944 * 2 1 3 30 30 H 1.08999 * 109.47293 * 120.00356 * 2 1 3 31 31 H 1.09002 * 109.56846 * 65.67118 * 5 3 2 32 32 H 1.09002 * 109.38738 * 305.62897 * 5 3 2 33 33 H 1.08998 * 109.45934 * 301.22000 * 6 5 3 34 34 H 1.08998 * 109.44928 * 181.25154 * 6 5 3 35 35 H 1.09008 * 109.49722 * 178.68331 * 7 6 5 36 36 H 1.09002 * 109.50301 * 58.59030 * 7 6 5 37 37 H 1.09001 * 109.58536 * 294.84916 * 8 7 6 38 38 H 1.09001 * 109.58457 * 174.42334 * 8 7 6 39 39 H 1.09002 * 109.47198 * 60.00413 * 12 10 9 40 40 H 1.08993 * 109.47505 * 300.00325 * 12 10 9 41 41 H 1.09001 * 109.47082 * 296.03940 * 14 13 12 42 42 H 1.09000 * 109.47484 * 56.03887 * 14 13 12 43 43 H 1.09001 * 109.47205 * 176.04828 * 14 13 12 44 44 H 1.09003 * 109.47082 * 300.00621 * 17 15 13 45 45 H 1.08998 * 109.46826 * 59.99894 * 17 15 13 46 46 H 1.08996 * 109.47171 * 179.97438 * 17 15 13 47 47 H 0.97001 * 120.00090 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6980 1.9532 0.9002 5 6 1.5070 2.1721 -1.2317 6 6 2.1311 3.5676 -1.3052 7 6 3.6507 3.4422 -1.4358 8 6 4.2082 2.7276 -0.2007 9 7 3.5087 1.4457 -0.0402 10 6 4.2009 0.2938 0.0627 11 8 3.6191 -0.7446 0.2951 12 6 5.6978 0.2963 -0.1113 13 7 6.2113 -1.0711 0.0460 14 6 6.0200 -1.5504 1.4213 15 6 7.6242 -1.1514 -0.3478 16 1 7.7550 -0.6923 -1.3277 17 6 8.4830 -0.4122 0.6804 18 6 8.0472 -2.5965 -0.4096 19 1 7.3373 -3.3772 -0.1798 20 6 9.3402 -2.9220 -0.7605 21 7 10.2046 -1.9713 -1.0409 22 14 9.8643 -4.7133 -0.8378 23 1 10.3819 -5.1353 0.4885 24 1 8.6972 -5.5551 -1.2043 25 1 10.9304 -4.8735 -1.8590 26 1 -0.3634 0.4330 -0.9320 27 1 -0.3633 -1.0237 0.0910 28 1 -0.3634 0.5906 0.8409 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.4228 2.2617 -1.1623 32 1 1.7688 1.6088 -2.1274 33 1 1.8890 4.1218 -0.3984 34 1 1.7347 4.0973 -2.1714 35 1 4.0925 4.4359 -1.5116 36 1 3.8930 2.8669 -2.3293 37 1 4.0467 3.3453 0.6828 38 1 5.2751 2.5477 -0.3332 39 1 6.1499 0.9432 0.6406 40 1 5.9475 0.6656 -1.1059 41 1 6.6085 -0.9382 2.1046 42 1 4.9652 -1.4800 1.6873 43 1 6.3443 -2.5886 1.4927 44 1 8.1771 0.6331 0.7252 45 1 8.3522 -0.8713 1.6603 46 1 9.5315 -0.4722 0.3885 47 1 11.1144 -2.2002 -1.2874 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161961971.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:25 Heat of formation + Delta-G solvation = -20.748272 kcal Electronic energy + Delta-G solvation = -23871.807899 eV Core-core repulsion = 20669.074071 eV Total energy + Delta-G solvation = -3202.733828 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.44261 -37.74309 -36.37322 -34.26561 -32.80052 -32.59006 -29.50304 -29.07995 -27.46501 -25.22353 -25.16781 -24.26804 -23.51824 -21.20401 -20.96937 -19.38452 -18.57333 -16.74165 -16.11950 -15.80426 -15.40691 -14.82575 -14.59447 -14.58093 -14.30697 -13.81241 -13.70454 -13.63509 -13.22934 -12.83737 -12.78009 -12.44983 -12.33918 -11.98350 -11.71633 -11.54603 -11.27427 -11.07140 -11.00656 -10.89675 -10.82050 -10.69855 -10.63913 -10.61286 -10.53072 -10.36972 -10.02430 -9.87437 -8.92485 -8.53156 -8.41496 -8.35231 -7.07031 -5.98052 -4.00502 3.00777 3.10989 3.34555 3.40769 3.46707 4.44590 4.54396 4.65114 4.70690 4.88675 4.99332 5.15035 5.18819 5.22736 5.29510 5.34565 5.40799 5.48466 5.59159 5.61067 5.71907 5.76256 5.80352 5.83939 5.89373 5.89985 5.93967 6.14181 6.15473 6.37256 6.43781 6.47074 6.54426 6.70539 6.82864 6.87608 7.01730 7.11276 7.43054 7.62546 7.73165 7.89231 8.14439 8.40533 8.57213 8.67618 9.06184 9.64322 11.09394 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025516 B = 0.004125 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.098654 B = 6786.897039 C = 7394.340550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.117 4.117 3 C 0.150 3.850 4 H 0.064 0.936 5 C -0.133 4.133 6 C -0.119 4.119 7 C -0.137 4.137 8 C 0.108 3.892 9 N -0.620 5.620 10 C 0.518 3.482 11 O -0.510 6.510 12 C 0.037 3.963 13 N -0.516 5.516 14 C 0.032 3.968 15 C 0.211 3.789 16 H 0.038 0.962 17 C -0.173 4.173 18 C -0.494 4.494 19 H 0.064 0.936 20 C 0.057 3.943 21 N -0.897 5.897 22 Si 0.897 3.103 23 H -0.282 1.282 24 H -0.273 1.273 25 H -0.288 1.288 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.050 0.950 40 H 0.092 0.908 41 H 0.011 0.989 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.004 0.996 45 H 0.033 0.967 46 H 0.089 0.911 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.187 12.946 1.402 20.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.154 4.154 3 C 0.047 3.953 4 H 0.082 0.918 5 C -0.171 4.171 6 C -0.156 4.156 7 C -0.175 4.175 8 C -0.016 4.016 9 N -0.356 5.356 10 C 0.307 3.693 11 O -0.385 6.385 12 C -0.095 4.095 13 N -0.240 5.240 14 C -0.116 4.116 15 C 0.105 3.895 16 H 0.056 0.944 17 C -0.232 4.232 18 C -0.533 4.533 19 H 0.082 0.918 20 C -0.143 4.143 21 N -0.537 5.537 22 Si 0.725 3.275 23 H -0.208 1.208 24 H -0.198 1.198 25 H -0.214 1.214 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.068 0.932 40 H 0.110 0.890 41 H 0.029 0.971 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.023 0.977 45 H 0.052 0.948 46 H 0.108 0.892 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.561 12.057 1.153 19.719 hybrid contribution 0.949 -0.106 0.389 1.031 sum -14.612 11.951 1.542 18.940 Atomic orbital electron populations 1.21977 0.97237 1.01482 1.00889 1.22102 0.93375 0.94309 1.05641 1.21151 0.79367 0.97625 0.97135 0.91850 1.21982 1.00216 0.96043 0.98882 1.21512 0.95369 0.96944 1.01824 1.21934 0.96067 1.00794 0.98709 1.21710 0.97421 0.84691 0.97739 1.48252 1.06081 1.06821 1.74480 1.20976 0.90179 0.82594 0.75566 1.90649 1.69678 1.31772 1.46383 1.21986 0.90831 0.94499 1.02141 1.62096 1.21867 1.16448 1.23601 1.22347 0.99843 1.00943 0.88493 1.19367 0.79685 0.96635 0.93846 0.94439 1.22422 1.05621 0.95221 0.99920 1.21103 0.95500 0.91451 1.45208 0.91832 1.24913 0.96548 0.97428 0.95457 1.69880 1.04667 1.31634 1.47523 0.86508 0.78247 0.85151 0.77595 1.20849 1.19797 1.21351 0.93221 0.92711 0.93336 0.91114 0.88693 0.90871 0.91465 0.91997 0.91872 0.90833 0.91229 0.91678 0.89376 0.93239 0.88958 0.97055 0.92108 0.91137 0.97677 0.94813 0.89239 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.38 37.16 0.35 -1.31 16 2 C -0.12 -1.57 3.89 -26.73 -0.10 -1.67 16 3 C 0.15 1.77 3.02 -67.82 -0.20 1.56 16 4 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 5 C -0.13 -1.28 4.79 -26.83 -0.13 -1.41 16 6 C -0.12 -0.97 5.89 -26.69 -0.16 -1.13 16 7 C -0.14 -1.20 6.08 -26.61 -0.16 -1.36 16 8 C 0.11 1.11 6.35 -3.71 -0.02 1.09 16 9 N -0.62 -8.22 2.98 -165.48 -0.49 -8.71 16 10 C 0.52 8.83 7.22 -10.98 -0.08 8.75 16 11 O -0.51 -10.05 9.89 5.56 0.06 -9.99 16 12 C 0.04 0.68 3.37 -4.98 -0.02 0.66 16 13 N -0.52 -11.61 4.44 -237.73 -1.06 -12.67 16 14 C 0.03 0.69 8.46 60.06 0.51 1.19 16 15 C 0.21 5.33 2.31 -68.86 -0.16 5.17 16 16 H 0.04 1.02 7.93 -51.93 -0.41 0.61 16 17 C -0.17 -4.13 8.22 37.16 0.31 -3.82 16 18 C -0.49 -13.78 7.97 -34.44 -0.27 -14.05 16 19 H 0.06 1.81 7.10 -52.49 -0.37 1.44 16 20 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 21 N -0.90 -25.52 11.32 55.43 0.63 -24.90 16 22 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H 0.05 0.47 6.83 -51.93 -0.35 0.11 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 1.12 7.26 -51.93 -0.38 0.75 16 30 H 0.09 1.51 6.22 -51.93 -0.32 1.19 16 31 H 0.07 0.61 6.85 -51.93 -0.36 0.25 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.93 5.93 -51.93 -0.31 0.62 16 39 H 0.05 0.85 6.63 -51.93 -0.34 0.51 16 40 H 0.09 1.61 7.71 -51.93 -0.40 1.21 16 41 H 0.01 0.23 6.21 -51.93 -0.32 -0.09 16 42 H 0.06 1.26 5.82 -51.93 -0.30 0.95 16 43 H 0.07 1.61 6.86 -51.93 -0.36 1.25 16 44 H 0.00 0.09 6.91 -51.93 -0.36 -0.27 16 45 H 0.03 0.79 6.33 -51.93 -0.33 0.46 16 46 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 47 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 343.98 15.07 5.18 5.18 Total: -1.00 -30.02 343.98 -9.12 -39.14 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -8.17 Total: 0.11 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -0.24 Total: -4.84 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -0.92 Total: -46.28 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.06 Total: -9.99 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.02 -9.12 -39.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161961971.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.392 kcal (2) G-P(sol) polarization free energy of solvation -30.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds