Wall clock time and date at job start Tue Mar 31 2020 05:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46898 * 2 1 4 4 H 1.09002 * 109.58719 * 298.70203 * 3 2 1 5 5 C 1.53193 * 109.58426 * 58.98004 * 3 2 1 6 6 C 1.53075 * 109.29514 * 174.28163 * 5 3 2 7 7 C 1.53045 * 109.65661 * 298.84491 * 6 5 3 8 8 C 1.53197 * 109.30784 * 61.30311 * 7 6 5 9 9 N 1.46918 * 109.58825 * 178.41226 * 3 2 1 10 10 C 1.34780 * 120.62981 * 6.63178 * 9 3 2 11 11 O 1.21281 * 119.99914 * 5.49345 * 10 9 3 12 12 C 1.50701 * 119.99886 * 185.49907 * 10 9 3 13 13 N 1.46899 * 109.47014 * 179.97438 * 12 10 9 14 14 C 1.46901 * 110.99939 * 293.95549 * 13 12 10 15 15 C 1.46896 * 111.00046 * 169.99930 * 13 12 10 16 16 H 1.09002 * 109.47594 * 310.00206 * 15 13 12 17 17 C 1.53004 * 109.47135 * 69.99985 * 15 13 12 18 18 C 1.50699 * 109.47297 * 189.99919 * 15 13 12 19 19 H 1.07995 * 120.00014 * 0.02562 * 18 15 13 20 20 C 1.37882 * 120.00138 * 179.97438 * 18 15 13 21 21 N 1.31513 * 120.00043 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 120.00028 * 180.02562 * 20 18 15 23 23 H 1.48491 * 109.47445 * 59.99737 * 22 20 18 24 24 H 1.48496 * 109.46973 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46570 * 299.99811 * 22 20 18 26 26 H 1.09005 * 109.47416 * 64.85155 * 1 2 3 27 27 H 1.09002 * 109.47221 * 184.84697 * 1 2 3 28 28 H 1.08999 * 109.47642 * 304.84644 * 1 2 3 29 29 H 1.08997 * 109.47302 * 240.00375 * 2 1 3 30 30 H 1.09003 * 109.47055 * 119.99610 * 2 1 3 31 31 H 1.09003 * 109.50314 * 294.37372 * 5 3 2 32 32 H 1.09001 * 109.49844 * 54.47088 * 5 3 2 33 33 H 1.09005 * 109.45381 * 178.76309 * 6 5 3 34 34 H 1.08994 * 109.33870 * 58.86686 * 6 5 3 35 35 H 1.08997 * 109.49840 * 301.34958 * 7 6 5 36 36 H 1.09000 * 109.52409 * 181.26263 * 7 6 5 37 37 H 1.08999 * 109.58220 * 185.57667 * 8 7 6 38 38 H 1.08992 * 109.59009 * 65.15100 * 8 7 6 39 39 H 1.08994 * 109.47246 * 300.00029 * 12 10 9 40 40 H 1.09002 * 109.47387 * 60.00028 * 12 10 9 41 41 H 1.08992 * 109.47120 * 60.00089 * 14 13 12 42 42 H 1.09009 * 109.46967 * 180.02562 * 14 13 12 43 43 H 1.08996 * 109.46965 * 299.99379 * 14 13 12 44 44 H 1.09004 * 109.47254 * 179.97438 * 17 15 13 45 45 H 1.08992 * 109.47153 * 300.00129 * 17 15 13 46 46 H 1.09002 * 109.47094 * 60.00341 * 17 15 13 47 47 H 0.97003 * 120.00354 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6967 1.9514 -0.9008 5 6 1.5098 2.1746 1.2369 6 6 2.1366 3.5694 1.3065 7 6 3.6570 3.4449 1.4297 8 6 4.2084 2.7284 0.1930 9 7 3.5086 1.4458 0.0384 10 6 4.2008 0.2941 -0.0669 11 8 3.6181 -0.7450 -0.2943 12 6 5.6987 0.2976 0.0981 13 7 6.2119 -1.0697 -0.0602 14 6 5.7424 -1.9375 1.0282 15 6 7.6786 -1.0753 -0.1425 16 1 8.0037 -0.3449 -0.8834 17 6 8.2675 -0.7138 1.2226 18 6 8.1538 -2.4470 -0.5472 19 1 7.4379 -3.2356 -0.7258 20 6 9.5025 -2.6949 -0.6905 21 7 10.3743 -1.7342 -0.4746 22 14 10.0915 -4.3949 -1.1929 23 1 9.5196 -4.7456 -2.5176 24 1 11.5741 -4.4005 -1.2760 25 1 9.6490 -5.3903 -0.1835 26 1 -0.3634 0.4367 -0.9303 27 1 -0.3634 -1.0240 0.0868 28 1 -0.3634 0.5872 0.8434 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.4254 2.2636 1.1702 32 1 1.7748 1.6136 2.1331 33 1 1.7444 4.1008 2.1737 34 1 1.8897 4.1217 0.3999 35 1 3.9039 2.8712 2.3229 36 1 4.0992 4.4386 1.5016 37 1 5.2760 2.5491 0.3203 38 1 4.0421 3.3442 -0.6907 39 1 6.1460 0.9436 -0.6574 40 1 5.9542 0.6685 1.0907 41 1 4.6530 -1.9702 1.0225 42 1 6.1374 -2.9436 0.8868 43 1 6.0892 -1.5424 1.9831 44 1 9.3558 -0.7183 1.1616 45 1 7.9238 0.2783 1.5153 46 1 7.9424 -1.4442 1.9635 47 1 11.3232 -1.9086 -0.5750 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161962098.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:28 Heat of formation + Delta-G solvation = -20.654662 kcal Electronic energy + Delta-G solvation = -23895.676797 eV Core-core repulsion = 20692.947029 eV Total energy + Delta-G solvation = -3202.729768 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.43785 -37.73108 -36.37309 -34.27228 -32.80750 -32.59116 -29.50178 -29.08022 -27.47244 -25.22441 -25.15512 -24.27715 -23.53919 -21.20782 -20.96937 -19.39311 -18.58588 -16.74080 -16.13575 -15.78827 -15.35884 -14.89882 -14.69032 -14.57391 -14.08877 -13.92003 -13.81848 -13.61926 -13.16143 -12.91779 -12.68861 -12.44780 -12.37432 -12.01331 -11.76036 -11.49609 -11.26708 -11.12659 -10.99429 -10.90129 -10.82249 -10.73866 -10.66644 -10.55315 -10.51365 -10.41894 -10.01570 -9.86620 -8.93713 -8.54635 -8.40494 -8.34517 -7.07666 -5.97874 -4.00404 3.01814 3.09919 3.36976 3.40136 3.44721 4.44349 4.52658 4.63847 4.68986 4.87466 4.98480 5.13974 5.18254 5.22162 5.27332 5.34571 5.40566 5.48246 5.58159 5.59654 5.70448 5.76956 5.77766 5.83007 5.87550 5.89487 5.92899 6.12571 6.13564 6.36646 6.41508 6.46682 6.54971 6.70694 6.83188 6.86998 7.01814 7.11684 7.43018 7.62570 7.72751 7.88954 8.14534 8.40630 8.57282 8.67759 9.05915 9.64273 11.09518 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027608 B = 0.004103 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.957698 B = 6821.870562 C = 7523.407541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.117 4.117 3 C 0.150 3.850 4 H 0.065 0.935 5 C -0.133 4.133 6 C -0.119 4.119 7 C -0.136 4.136 8 C 0.107 3.893 9 N -0.620 5.620 10 C 0.518 3.482 11 O -0.510 6.510 12 C 0.037 3.963 13 N -0.516 5.516 14 C 0.032 3.968 15 C 0.211 3.789 16 H 0.038 0.962 17 C -0.172 4.172 18 C -0.495 4.495 19 H 0.063 0.937 20 C 0.057 3.943 21 N -0.897 5.897 22 Si 0.898 3.102 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.278 1.278 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.008 0.992 44 H 0.089 0.911 45 H 0.004 0.996 46 H 0.032 0.968 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.780 12.089 4.099 20.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.154 4.154 3 C 0.047 3.953 4 H 0.083 0.917 5 C -0.171 4.171 6 C -0.157 4.157 7 C -0.174 4.174 8 C -0.016 4.016 9 N -0.356 5.356 10 C 0.307 3.693 11 O -0.385 6.385 12 C -0.095 4.095 13 N -0.240 5.240 14 C -0.116 4.116 15 C 0.105 3.895 16 H 0.056 0.944 17 C -0.231 4.231 18 C -0.534 4.534 19 H 0.081 0.919 20 C -0.143 4.143 21 N -0.537 5.537 22 Si 0.726 3.274 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.204 1.204 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.027 0.973 44 H 0.107 0.893 45 H 0.023 0.977 46 H 0.051 0.949 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.053 11.334 3.511 19.962 hybrid contribution 0.820 -0.273 0.624 1.066 sum -15.233 11.061 4.135 19.274 Atomic orbital electron populations 1.22004 0.97231 1.01510 1.00998 1.22102 0.93393 0.94347 1.05551 1.21225 0.79384 0.97627 0.97113 0.91715 1.22066 1.00230 0.96050 0.98742 1.21517 0.95327 0.96955 1.01865 1.21925 0.96094 1.00775 0.98635 1.21713 0.97421 0.84691 0.97767 1.48241 1.06051 1.06836 1.74494 1.20980 0.90122 0.82677 0.75524 1.90648 1.69688 1.31785 1.46376 1.21991 0.91092 0.95436 1.00957 1.62089 1.13146 1.04550 1.44216 1.22349 0.99779 0.98516 0.90974 1.19363 0.79470 0.97880 0.92796 0.94428 1.22418 1.05469 0.95616 0.99623 1.21065 0.91441 0.95842 1.45026 0.91876 1.24914 0.96705 0.97110 0.95583 1.69871 1.01729 1.31999 1.50098 0.86562 0.77216 0.84411 0.79232 1.20211 1.21454 1.20368 0.93256 0.92732 0.93139 0.88460 0.91437 0.90796 0.91628 0.91912 0.91919 0.91455 0.90803 0.89365 0.91514 0.89012 0.93140 0.91989 0.91016 0.97313 0.89254 0.97688 0.94886 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.67 37.16 0.36 -1.30 16 2 C -0.12 -1.55 3.90 -26.73 -0.10 -1.65 16 3 C 0.15 1.76 3.02 -67.60 -0.20 1.55 16 4 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 5 C -0.13 -1.25 4.83 -26.59 -0.13 -1.38 16 6 C -0.12 -0.96 5.88 -26.67 -0.16 -1.12 16 7 C -0.14 -1.17 6.09 -26.61 -0.16 -1.34 16 8 C 0.11 1.11 6.35 -3.71 -0.02 1.09 16 9 N -0.62 -8.22 2.97 -165.22 -0.49 -8.71 16 10 C 0.52 8.84 7.26 -10.98 -0.08 8.76 16 11 O -0.51 -10.06 9.87 5.56 0.05 -10.00 16 12 C 0.04 0.67 3.37 -4.98 -0.02 0.66 16 13 N -0.52 -11.62 4.44 -237.73 -1.06 -12.68 16 14 C 0.03 0.69 8.34 60.07 0.50 1.19 16 15 C 0.21 5.34 2.31 -68.86 -0.16 5.18 16 16 H 0.04 1.03 7.93 -51.93 -0.41 0.61 16 17 C -0.17 -4.12 8.22 37.16 0.31 -3.82 16 18 C -0.50 -13.81 7.91 -34.44 -0.27 -14.08 16 19 H 0.06 1.80 7.12 -52.49 -0.37 1.42 16 20 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 21 N -0.90 -25.51 11.32 55.43 0.63 -24.89 16 22 Si 0.90 21.70 29.54 -169.99 -5.02 16.67 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.46 6.29 -51.93 -0.33 0.13 16 29 H 0.10 1.57 6.22 -51.93 -0.32 1.25 16 30 H 0.07 1.03 7.26 -51.93 -0.38 0.65 16 31 H 0.07 0.60 6.64 -51.93 -0.34 0.26 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.93 5.93 -51.93 -0.31 0.62 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 1.59 7.51 -51.93 -0.39 1.20 16 40 H 0.05 0.88 6.83 -51.93 -0.35 0.52 16 41 H 0.06 1.29 5.88 -51.93 -0.31 0.98 16 42 H 0.07 1.64 6.76 -51.92 -0.35 1.29 16 43 H 0.01 0.18 6.46 -51.93 -0.34 -0.16 16 44 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 45 H 0.00 0.09 6.91 -51.93 -0.36 -0.27 16 46 H 0.03 0.78 6.42 -51.93 -0.33 0.44 16 47 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 343.71 15.07 5.18 5.18 Total: -1.00 -30.00 343.71 -9.09 -39.09 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -8.15 Total: 0.08 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -0.24 Total: -4.75 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -0.92 Total: -46.27 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.05 Total: -10.00 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.00 -9.09 -39.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161962098.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.433 kcal (2) G-P(sol) polarization free energy of solvation -29.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds