Wall clock time and date at job start Tue Mar 31 2020 05:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46898 * 2 1 4 4 H 1.09002 * 109.58719 * 298.70203 * 3 2 1 5 5 C 1.53193 * 109.58426 * 58.98004 * 3 2 1 6 6 C 1.53075 * 109.29514 * 174.28163 * 5 3 2 7 7 C 1.53045 * 109.65661 * 298.84491 * 6 5 3 8 8 C 1.53197 * 109.30784 * 61.30311 * 7 6 5 9 9 N 1.46918 * 109.58825 * 178.41226 * 3 2 1 10 10 C 1.34780 * 120.62981 * 6.63178 * 9 3 2 11 11 O 1.21281 * 119.99914 * 5.49345 * 10 9 3 12 12 C 1.50701 * 119.99886 * 185.49907 * 10 9 3 13 13 N 1.46899 * 109.47014 * 179.97438 * 12 10 9 14 14 C 1.46901 * 110.99939 * 293.95549 * 13 12 10 15 15 C 1.46896 * 111.00046 * 169.99930 * 13 12 10 16 16 H 1.09002 * 109.47594 * 310.00206 * 15 13 12 17 17 C 1.53004 * 109.47135 * 69.99985 * 15 13 12 18 18 C 1.50699 * 109.47297 * 189.99919 * 15 13 12 19 19 H 1.07995 * 120.00014 * 0.02562 * 18 15 13 20 20 C 1.37882 * 120.00138 * 179.97438 * 18 15 13 21 21 N 1.31513 * 120.00043 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 120.00028 * 180.02562 * 20 18 15 23 23 H 1.48491 * 109.47445 * 59.99737 * 22 20 18 24 24 H 1.48496 * 109.46973 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46570 * 299.99811 * 22 20 18 26 26 H 1.09005 * 109.47416 * 64.85155 * 1 2 3 27 27 H 1.09002 * 109.47221 * 184.84697 * 1 2 3 28 28 H 1.08999 * 109.47642 * 304.84644 * 1 2 3 29 29 H 1.08997 * 109.47302 * 240.00375 * 2 1 3 30 30 H 1.09003 * 109.47055 * 119.99610 * 2 1 3 31 31 H 1.09003 * 109.50314 * 294.37372 * 5 3 2 32 32 H 1.09001 * 109.49844 * 54.47088 * 5 3 2 33 33 H 1.09005 * 109.45381 * 178.76309 * 6 5 3 34 34 H 1.08994 * 109.33870 * 58.86686 * 6 5 3 35 35 H 1.08997 * 109.49840 * 301.34958 * 7 6 5 36 36 H 1.09000 * 109.52409 * 181.26263 * 7 6 5 37 37 H 1.08999 * 109.58220 * 185.57667 * 8 7 6 38 38 H 1.08992 * 109.59009 * 65.15100 * 8 7 6 39 39 H 1.08994 * 109.47246 * 300.00029 * 12 10 9 40 40 H 1.09002 * 109.47387 * 60.00028 * 12 10 9 41 41 H 1.08992 * 109.47120 * 60.00089 * 14 13 12 42 42 H 1.09009 * 109.46967 * 180.02562 * 14 13 12 43 43 H 1.08996 * 109.46965 * 299.99379 * 14 13 12 44 44 H 1.09004 * 109.47254 * 179.97438 * 17 15 13 45 45 H 1.08992 * 109.47153 * 300.00129 * 17 15 13 46 46 H 1.09002 * 109.47094 * 60.00341 * 17 15 13 47 47 H 0.97003 * 120.00354 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6967 1.9514 -0.9008 5 6 1.5098 2.1746 1.2369 6 6 2.1366 3.5694 1.3065 7 6 3.6570 3.4449 1.4297 8 6 4.2084 2.7284 0.1930 9 7 3.5086 1.4458 0.0384 10 6 4.2008 0.2941 -0.0669 11 8 3.6181 -0.7450 -0.2943 12 6 5.6987 0.2976 0.0981 13 7 6.2119 -1.0697 -0.0602 14 6 5.7424 -1.9375 1.0282 15 6 7.6786 -1.0753 -0.1425 16 1 8.0037 -0.3449 -0.8834 17 6 8.2675 -0.7138 1.2226 18 6 8.1538 -2.4470 -0.5472 19 1 7.4379 -3.2356 -0.7258 20 6 9.5025 -2.6949 -0.6905 21 7 10.3743 -1.7342 -0.4746 22 14 10.0915 -4.3949 -1.1929 23 1 9.5196 -4.7456 -2.5176 24 1 11.5741 -4.4005 -1.2760 25 1 9.6490 -5.3903 -0.1835 26 1 -0.3634 0.4367 -0.9303 27 1 -0.3634 -1.0240 0.0868 28 1 -0.3634 0.5872 0.8434 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.4254 2.2636 1.1702 32 1 1.7748 1.6136 2.1331 33 1 1.7444 4.1008 2.1737 34 1 1.8897 4.1217 0.3999 35 1 3.9039 2.8712 2.3229 36 1 4.0992 4.4386 1.5016 37 1 5.2760 2.5491 0.3203 38 1 4.0421 3.3442 -0.6907 39 1 6.1460 0.9436 -0.6574 40 1 5.9542 0.6685 1.0907 41 1 4.6530 -1.9702 1.0225 42 1 6.1374 -2.9436 0.8868 43 1 6.0892 -1.5424 1.9831 44 1 9.3558 -0.7183 1.1616 45 1 7.9238 0.2783 1.5153 46 1 7.9424 -1.4442 1.9635 47 1 11.3232 -1.9086 -0.5750 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161962098.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:28 Heat of formation + Delta-G solvation = -38.786499 kcal Electronic energy + Delta-G solvation = -23896.463053 eV Core-core repulsion = 20692.947029 eV Total energy + Delta-G solvation = -3203.516024 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.60356 -39.11165 -37.86801 -35.31947 -34.57192 -33.75653 -30.98275 -30.28526 -29.06028 -27.27406 -26.45007 -25.29410 -24.89033 -22.30011 -21.90675 -21.04180 -19.82923 -18.29449 -17.83312 -17.04965 -16.68127 -16.59747 -15.89194 -15.61599 -15.37407 -15.31891 -15.17288 -14.49170 -14.44447 -14.24068 -14.10879 -13.91432 -13.51104 -13.38769 -13.03322 -12.88716 -12.75409 -12.59939 -12.56963 -12.51024 -12.24179 -12.05760 -12.01522 -11.88168 -11.71241 -11.68116 -11.48420 -11.36382 -10.96922 -10.48164 -9.89112 -9.47676 -8.82531 -8.10694 -6.20291 1.42843 1.44280 1.52092 1.70384 1.99250 2.44340 3.18346 3.37741 3.62020 3.87007 3.89384 4.02302 4.12906 4.28913 4.31173 4.33622 4.39514 4.43041 4.57473 4.58575 4.68205 4.69067 4.73667 4.80855 4.86715 4.89435 4.92021 5.01388 5.09482 5.11295 5.15546 5.21520 5.22276 5.29452 5.35557 5.47070 5.50491 5.51670 5.70229 5.78382 5.84000 6.17930 6.43282 6.46671 6.71993 6.90993 7.35736 7.48309 8.95183 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027608 B = 0.004103 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.957698 B = 6821.870562 C = 7523.407541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C 0.145 3.855 4 H 0.078 0.922 5 C -0.126 4.126 6 C -0.116 4.116 7 C -0.132 4.132 8 C 0.098 3.902 9 N -0.612 5.612 10 C 0.516 3.484 11 O -0.546 6.546 12 C 0.039 3.961 13 N -0.535 5.535 14 C 0.046 3.954 15 C 0.217 3.783 16 H 0.013 0.987 17 C -0.157 4.157 18 C -0.517 4.517 19 H 0.048 0.952 20 C 0.016 3.984 21 N -0.917 5.917 22 Si 0.956 3.044 23 H -0.276 1.276 24 H -0.280 1.280 25 H -0.274 1.274 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.040 0.960 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.016 0.984 44 H 0.064 0.936 45 H 0.030 0.970 46 H 0.029 0.971 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.029 13.907 4.575 22.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C 0.043 3.957 4 H 0.096 0.904 5 C -0.164 4.164 6 C -0.153 4.153 7 C -0.170 4.170 8 C -0.024 4.024 9 N -0.347 5.347 10 C 0.304 3.696 11 O -0.424 6.424 12 C -0.092 4.092 13 N -0.259 5.259 14 C -0.103 4.103 15 C 0.110 3.890 16 H 0.031 0.969 17 C -0.216 4.216 18 C -0.555 4.555 19 H 0.067 0.933 20 C -0.183 4.183 21 N -0.557 5.557 22 Si 0.782 3.218 23 H -0.201 1.201 24 H -0.206 1.206 25 H -0.199 1.199 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.035 0.965 44 H 0.083 0.917 45 H 0.049 0.951 46 H 0.048 0.952 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.321 13.202 3.998 22.143 hybrid contribution 1.161 -0.771 0.456 1.466 sum -16.160 12.431 4.454 20.869 Atomic orbital electron populations 1.21930 0.94761 1.01833 1.02437 1.21877 0.95463 0.94937 1.02510 1.21405 0.78242 0.96943 0.99093 0.90397 1.22026 1.01409 0.96460 0.96530 1.21528 0.94535 0.96021 1.03256 1.21915 0.96805 1.01408 0.96872 1.22002 0.97142 0.83533 0.99699 1.48267 1.06949 1.06737 1.72762 1.20752 0.89611 0.83424 0.75818 1.90662 1.70053 1.33334 1.48322 1.22006 0.92279 0.93074 1.01836 1.61913 1.11533 1.07260 1.45157 1.22184 0.99785 0.97304 0.90988 1.19125 0.81297 0.95941 0.92654 0.96872 1.22196 1.03602 0.96985 0.98837 1.21295 0.91689 0.96792 1.45730 0.93349 1.25604 0.96748 1.00489 0.95466 1.69974 1.01913 1.33483 1.50340 0.85641 0.76993 0.80382 0.78773 1.20142 1.20554 1.19929 0.92034 0.93173 0.91250 0.91936 0.94142 0.88862 0.93035 0.90304 0.90658 0.92674 0.88524 0.89768 0.89640 0.88372 0.91864 0.91532 0.93147 0.96535 0.91690 0.95062 0.95164 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.67 71.98 0.70 -2.24 16 2 C -0.11 -2.93 3.90 30.59 0.12 -2.81 16 3 C 0.15 3.18 3.02 44.98 0.14 3.32 16 4 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 5 C -0.13 -2.04 4.83 30.68 0.15 -1.89 16 6 C -0.12 -1.43 5.88 30.63 0.18 -1.25 16 7 C -0.13 -1.87 6.09 30.68 0.19 -1.68 16 8 C 0.10 1.81 6.35 86.36 0.55 2.36 16 9 N -0.61 -15.56 2.97 -795.03 -2.36 -17.93 16 10 C 0.52 17.67 7.26 87.66 0.64 18.30 16 11 O -0.55 -22.21 9.87 -3.03 -0.03 -22.24 16 12 C 0.04 1.43 3.37 85.56 0.29 1.72 16 13 N -0.53 -24.53 4.44 -906.05 -4.02 -28.56 16 14 C 0.05 2.00 8.34 127.69 1.06 3.07 16 15 C 0.22 11.18 2.31 44.17 0.10 11.28 16 16 H 0.01 0.75 7.93 -2.39 -0.02 0.73 16 17 C -0.16 -7.54 8.22 71.98 0.59 -6.95 16 18 C -0.52 -29.46 7.91 25.60 0.20 -29.25 16 19 H 0.05 2.84 7.12 -2.91 -0.02 2.82 16 20 C 0.02 0.88 5.30 84.66 0.45 1.33 16 21 N -0.92 -52.61 11.32 21.45 0.24 -52.37 16 22 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 25 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 26 H 0.06 1.04 8.14 -2.38 -0.02 1.03 16 27 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 28 H 0.07 1.08 6.29 -2.39 -0.02 1.06 16 29 H 0.06 2.10 6.22 -2.39 -0.01 2.09 16 30 H 0.04 1.27 7.26 -2.39 -0.02 1.25 16 31 H 0.09 1.17 6.64 -2.39 -0.02 1.16 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 0.78 8.14 -2.38 -0.02 0.77 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 1.62 5.93 -2.39 -0.01 1.61 16 38 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.10 3.39 7.51 -2.39 -0.02 3.37 16 40 H 0.06 2.13 6.83 -2.39 -0.02 2.11 16 41 H 0.07 2.85 5.88 -2.39 -0.01 2.84 16 42 H 0.05 2.38 6.76 -2.38 -0.02 2.36 16 43 H 0.02 0.68 6.46 -2.39 -0.02 0.66 16 44 H 0.06 3.46 6.07 -2.39 -0.01 3.44 16 45 H 0.03 1.29 6.91 -2.39 -0.02 1.27 16 46 H 0.03 1.42 6.42 -2.39 -0.02 1.41 16 47 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -66.11 343.71 2.13 -63.97 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.93 Total: 14.97 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 5.35 Total: -4.70 kcal Atomic # 7 Polarization: -92.71 SS G_CDS: -6.14 Total: -98.85 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.03 Total: -22.24 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -66.11 2.13 -63.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161962098.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.186 kcal (2) G-P(sol) polarization free energy of solvation -66.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds