Wall clock time and date at job start Tue Mar 31 2020 06:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47168 * 2 1 4 4 N 1.46494 * 109.46857 * 180.02562 * 3 2 1 5 5 C 1.34784 * 119.99696 * 180.02562 * 4 3 2 6 6 O 1.21275 * 120.00149 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.99950 * 180.02562 * 5 4 3 8 8 C 1.53111 * 109.52208 * 179.97438 * 7 5 4 9 9 C 1.53040 * 109.27976 * 182.37553 * 8 7 5 10 10 N 1.46844 * 109.52213 * 59.17809 * 9 8 7 11 11 C 1.46901 * 111.00526 * 174.16367 * 10 9 8 12 12 C 1.52992 * 109.47859 * 170.00090 * 11 10 9 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 C 1.46848 * 111.20049 * 298.25822 * 10 9 8 23 23 C 1.53045 * 109.52212 * 61.74502 * 22 10 9 24 24 H 1.09001 * 109.47185 * 59.99760 * 1 2 3 25 25 H 1.08998 * 109.47254 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47539 * 299.99893 * 1 2 3 27 27 H 1.09001 * 109.46629 * 240.00079 * 2 1 3 28 28 H 1.09001 * 109.47185 * 120.00240 * 2 1 3 29 29 H 1.08993 * 109.46934 * 59.99928 * 3 2 1 30 30 H 1.08999 * 109.46751 * 300.00218 * 3 2 1 31 31 H 0.96999 * 120.00283 * 359.97438 * 4 3 2 32 32 H 1.09003 * 109.51840 * 300.12617 * 7 5 4 33 33 H 1.08993 * 109.50713 * 62.43516 * 8 7 5 34 34 H 1.08998 * 109.50742 * 302.31723 * 8 7 5 35 35 H 1.09001 * 109.46414 * 299.16653 * 9 8 7 36 36 H 1.08996 * 109.45780 * 179.18574 * 9 8 7 37 37 H 1.09002 * 109.46980 * 49.99749 * 11 10 9 38 38 H 1.09001 * 109.46628 * 290.00171 * 11 10 9 39 39 H 1.09002 * 109.47103 * 59.99734 * 12 11 10 40 40 H 1.08998 * 109.46862 * 300.00546 * 12 11 10 41 41 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 42 42 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 43 43 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 44 44 H 1.09000 * 109.46861 * 181.75554 * 22 10 9 45 45 H 1.08996 * 109.46450 * 301.72736 * 22 10 9 46 46 H 1.08996 * 109.50378 * 180.88718 * 23 22 10 47 47 H 1.08993 * 109.50521 * 60.75626 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4424 -0.0006 5 6 4.1789 2.6097 -0.0002 6 8 3.5725 3.6600 0.0002 7 6 5.6859 2.6097 -0.0014 8 6 6.1975 4.0528 -0.0013 9 6 7.7267 4.0467 -0.0624 10 7 8.1664 3.3526 -1.2795 11 6 9.6233 3.4474 -1.4425 12 6 10.0724 2.5144 -2.5687 13 6 11.5896 2.6136 -2.7389 14 6 12.0320 1.6940 -3.8478 15 1 11.3038 1.0987 -4.3785 16 6 13.3663 1.6136 -4.1856 17 7 14.2530 2.3389 -3.5398 18 14 13.9145 0.4743 -5.5607 19 1 13.2472 0.8698 -6.8270 20 1 15.3872 0.5705 -5.7257 21 1 13.5452 -0.9237 -5.2222 22 6 7.7271 1.9514 -1.2798 23 6 6.1978 1.8950 -1.2551 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 3.9899 0.6024 -0.0006 32 1 6.0508 2.0933 0.8865 33 1 5.8718 4.5543 0.9099 34 1 5.8008 4.5797 -0.8691 35 1 8.1231 3.5317 0.8126 36 1 8.0936 5.0730 -0.0771 37 1 10.1126 3.1566 -0.5129 38 1 9.8951 4.4734 -1.6906 39 1 9.5831 2.8052 -3.4983 40 1 9.8005 1.4884 -2.3206 41 1 12.0793 2.3231 -1.8094 42 1 11.8610 3.6397 -2.9872 43 1 15.1918 2.2820 -3.7772 44 1 8.0942 1.4558 -2.1785 45 1 8.1234 1.4463 -0.3991 46 1 5.8723 0.8549 -1.2395 47 1 5.8011 2.3879 -2.1426 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171030803.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:38 Heat of formation + Delta-G solvation = -68.908481 kcal Electronic energy + Delta-G solvation = -22100.987598 eV Core-core repulsion = 18896.165387 eV Total energy + Delta-G solvation = -3204.822211 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.36269 -38.48864 -36.12817 -34.74108 -33.22390 -32.69666 -31.10115 -30.51018 -27.44284 -26.25708 -24.49191 -23.22362 -22.29912 -22.00038 -20.79239 -19.73943 -19.52245 -17.32482 -16.45490 -16.29754 -16.12071 -15.45117 -15.02074 -14.76519 -14.51899 -14.35964 -14.21784 -13.56325 -13.42370 -13.30755 -13.23531 -12.60954 -12.50536 -12.22751 -12.17736 -11.73706 -11.60367 -11.48774 -11.33685 -11.24833 -11.06945 -10.84601 -10.79922 -10.71488 -10.52393 -10.20844 -9.81847 -9.58921 -9.33802 -9.32066 -9.04292 -8.33230 -8.01592 -5.98639 -4.00865 2.48535 2.93652 3.33793 3.38169 3.40571 4.12983 4.37904 4.47240 4.48510 4.51723 4.66298 4.74293 4.79982 5.12284 5.17435 5.19250 5.20924 5.34953 5.36963 5.39631 5.48448 5.55579 5.56907 5.63848 5.66911 5.74058 5.76291 5.84212 5.93385 6.03382 6.10630 6.11185 6.15526 6.31007 6.34712 6.70874 6.78874 7.09764 7.23970 7.41000 7.42038 7.68727 7.84080 8.01483 8.03457 8.44437 9.06007 9.62887 11.12704 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025252 B = 0.002612 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.552002 B =10718.791045 C =11658.635196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.117 3.883 4 N -0.735 5.735 5 C 0.520 3.480 6 O -0.539 6.539 7 C -0.108 4.108 8 C -0.094 4.094 9 C 0.054 3.946 10 N -0.540 5.540 11 C 0.056 3.944 12 C -0.112 4.112 13 C 0.022 3.978 14 C -0.519 4.519 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.050 3.950 23 C -0.105 4.105 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.401 0.599 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.030 0.970 36 H 0.077 0.923 37 H 0.028 0.972 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.013 0.987 42 H 0.016 0.984 43 H 0.261 0.739 44 H 0.093 0.907 45 H 0.032 0.968 46 H 0.067 0.933 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.704 -3.929 9.937 26.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C -0.007 4.007 4 N -0.388 5.388 5 C 0.307 3.693 6 O -0.416 6.416 7 C -0.129 4.129 8 C -0.132 4.132 9 C -0.074 4.074 10 N -0.264 5.264 11 C -0.071 4.071 12 C -0.150 4.150 13 C -0.016 4.016 14 C -0.557 4.557 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.078 4.078 23 C -0.143 4.143 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.235 0.765 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.048 0.952 36 H 0.095 0.905 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.032 0.968 42 H 0.035 0.965 43 H 0.070 0.930 44 H 0.111 0.889 45 H 0.050 0.950 46 H 0.085 0.915 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.183 -2.879 9.551 26.160 hybrid contribution 1.034 -1.470 0.010 1.797 sum -23.150 -4.350 9.561 25.421 Atomic orbital electron populations 1.21679 0.94555 1.02185 1.02344 1.21744 0.97017 0.95871 1.02819 1.21387 0.79823 0.97074 1.02368 1.46076 1.07243 1.08976 1.76460 1.20791 0.90219 0.83322 0.75004 1.90690 1.70518 1.31370 1.48994 1.21440 0.90716 1.00015 1.00765 1.21394 0.94582 0.93894 1.03320 1.22097 0.94789 0.99523 0.90965 1.62034 1.14253 1.13542 1.36615 1.22285 0.84683 1.01387 0.98716 1.21797 0.99943 0.96930 0.96321 1.19068 0.88508 0.97228 0.96764 1.21204 0.92466 1.24298 1.17772 0.92780 1.25034 0.96918 0.95945 0.96659 1.69956 1.01825 1.40474 1.41268 0.86659 0.77418 0.81266 0.82644 1.20221 1.21325 1.20305 1.22189 0.93650 0.89965 1.01992 1.21609 0.96453 0.99422 0.96862 0.92306 0.92151 0.92385 0.91173 0.91318 0.91651 0.91533 0.76504 0.88936 0.91222 0.90273 0.95173 0.90466 0.95341 0.90982 0.92525 0.93187 0.96827 0.96528 0.92984 0.88892 0.95000 0.91460 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.16 0.37 -0.33 16 2 C -0.14 -0.69 6.05 -26.73 -0.16 -0.86 16 3 C 0.12 0.89 5.67 -4.04 -0.02 0.87 16 4 N -0.73 -6.05 5.46 -60.30 -0.33 -6.38 16 5 C 0.52 5.90 7.16 -10.98 -0.08 5.82 16 6 O -0.54 -8.19 15.98 5.56 0.09 -8.10 16 7 C -0.11 -1.12 2.59 -91.65 -0.24 -1.36 16 8 C -0.09 -1.12 4.68 -26.65 -0.12 -1.24 16 9 C 0.05 0.70 5.42 -3.83 -0.02 0.68 16 10 N -0.54 -8.06 4.81 -234.67 -1.13 -9.18 16 11 C 0.06 0.98 5.27 -3.83 -0.02 0.96 16 12 C -0.11 -2.29 4.40 -26.74 -0.12 -2.41 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 18 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.05 0.66 4.85 -3.83 -0.02 0.64 16 23 C -0.11 -1.11 5.26 -26.64 -0.14 -1.25 16 24 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.40 2.32 7.96 -40.82 -0.33 2.00 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 35 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 37 H 0.03 0.50 8.08 -51.93 -0.42 0.08 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.05 0.98 6.21 -51.93 -0.32 0.66 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.09 1.33 5.81 -51.93 -0.30 1.03 16 45 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.54 7.67 -51.93 -0.40 0.14 16 47 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 369.42 15.07 5.57 5.57 Total: -1.00 -32.43 369.42 -10.12 -42.55 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -8.91 Total: -3.23 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -1.12 Total: -11.60 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: -0.72 Total: -41.87 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: 0.09 Total: -8.10 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.43 -10.12 -42.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171030803.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.357 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds