Wall clock time and date at job start Tue Mar 31 2020 05:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47257 * 2 1 4 4 H 1.08997 * 108.44876 * 302.68586 * 3 2 1 5 5 C 1.52569 * 108.51085 * 184.99924 * 3 2 1 6 6 C 1.50882 * 109.35865 * 153.73415 * 5 3 2 7 7 C 1.53950 * 110.09722 * 91.88278 * 6 5 3 8 8 N 1.47603 * 112.14303 * 319.43764 * 7 6 5 9 9 C 1.34769 * 118.64941 * 137.86601 * 8 7 6 10 10 O 1.21592 * 119.99960 * 355.16477 * 9 8 7 11 11 N 1.34773 * 120.00438 * 175.16541 * 9 8 7 12 12 C 1.46498 * 120.00368 * 185.12798 * 11 9 8 13 13 C 1.52994 * 109.47437 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47626 * 179.97438 * 13 12 11 15 15 C 1.50692 * 109.47706 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00084 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00320 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99862 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00068 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47092 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47314 * 120.00110 * 19 17 15 22 22 H 1.48502 * 109.47109 * 239.99957 * 19 17 15 23 23 C 1.44579 * 122.70783 * 317.88936 * 8 7 6 24 24 C 1.47089 * 108.51537 * 60.22992 * 3 2 1 25 25 H 1.09007 * 109.47280 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47482 * 300.00176 * 1 2 3 27 27 H 1.09002 * 109.46870 * 60.00312 * 1 2 3 28 28 H 1.09000 * 109.47025 * 239.99548 * 2 1 3 29 29 H 1.09002 * 109.46870 * 119.99688 * 2 1 3 30 30 H 1.08994 * 109.48833 * 273.69757 * 5 3 2 31 31 H 1.08996 * 109.49040 * 33.74924 * 5 3 2 32 32 H 1.08998 * 109.36940 * 212.07122 * 6 5 3 33 33 H 1.09000 * 109.36776 * 331.81686 * 6 5 3 34 34 H 1.09001 * 108.94786 * 80.12126 * 7 6 5 35 35 H 1.08999 * 108.94979 * 198.83888 * 7 6 5 36 36 H 0.97002 * 119.99809 * 5.12235 * 11 9 8 37 37 H 1.09005 * 109.47070 * 299.99916 * 12 11 9 38 38 H 1.09005 * 109.47412 * 59.99623 * 12 11 9 39 39 H 1.08995 * 109.47304 * 300.00056 * 13 12 11 40 40 H 1.09005 * 109.47308 * 60.00246 * 13 12 11 41 41 H 1.09005 * 109.47142 * 300.00355 * 14 13 12 42 42 H 1.09002 * 109.46794 * 59.99566 * 14 13 12 43 43 H 0.97001 * 119.99919 * 179.97438 * 18 17 15 44 44 H 1.09009 * 109.44865 * 210.73984 * 23 8 7 45 45 H 1.08998 * 109.45396 * 330.69173 * 23 8 7 46 46 H 1.09000 * 109.33331 * 304.32396 * 24 3 2 47 47 H 1.09009 * 109.32695 * 63.79899 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6286 1.9538 -0.8702 5 6 3.5603 1.4187 -0.1261 6 6 4.0298 2.7050 -0.7596 7 6 4.3573 3.7425 0.3296 8 7 3.3734 3.7236 1.4297 9 6 3.8200 3.8182 2.6978 10 8 5.0150 3.8279 2.9223 11 7 2.9423 3.9019 3.7170 12 6 3.4246 4.1175 5.0834 13 6 2.2335 4.1741 6.0418 14 6 2.7373 4.3987 7.4690 15 6 1.5641 4.4538 8.4131 16 1 0.5594 4.3404 8.0333 17 6 1.7731 4.6500 9.7618 18 7 2.9964 4.7885 10.2243 19 14 0.3187 4.7175 10.9322 20 1 -0.9411 4.5353 10.1673 21 1 0.4458 3.6367 11.9425 22 1 0.2953 6.0350 11.6170 23 6 1.9502 3.6073 1.2031 24 6 1.5428 2.1137 1.2107 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.0057 1.3170 0.8635 31 1 3.8605 0.5757 -0.7484 32 1 4.9228 2.5106 -1.3537 33 1 3.2444 3.0975 -1.4056 34 1 5.3462 3.5293 0.7356 35 1 4.3658 4.7359 -0.1188 36 1 1.9910 3.8194 3.5459 37 1 4.0833 3.2975 5.3698 38 1 3.9736 5.0580 5.1308 39 1 1.5752 4.9942 5.7553 40 1 1.6841 3.2338 5.9947 41 1 3.3954 3.5782 7.7553 42 1 3.2869 5.3388 7.5165 43 1 3.1434 4.9269 11.1730 44 1 1.4129 4.1336 1.9921 45 1 1.6993 4.0466 0.2377 46 1 0.4561 2.0362 1.2458 47 1 1.9651 1.6291 2.0911 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172335314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:43 Heat of formation + Delta-G solvation = -58.415197 kcal Electronic energy + Delta-G solvation = -22839.302060 eV Core-core repulsion = 19634.934872 eV Total energy + Delta-G solvation = -3204.367188 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.62747 -38.44264 -35.63085 -35.02646 -33.69656 -32.83565 -30.94402 -30.77898 -27.47441 -26.38085 -25.24935 -23.43554 -22.77572 -21.24069 -20.62267 -20.32476 -19.16299 -17.92064 -16.63182 -16.14692 -15.94734 -15.18236 -15.04380 -14.81085 -14.61525 -14.36174 -14.08091 -13.77515 -13.45072 -13.09553 -13.02224 -12.59091 -12.45138 -12.25913 -11.97766 -11.75334 -11.68167 -11.55243 -11.24521 -11.04400 -10.90701 -10.73345 -10.69515 -10.60879 -10.54519 -10.48762 -9.93734 -9.83793 -9.41272 -9.09202 -8.85419 -8.40871 -8.35941 -6.00435 -4.03354 2.78387 3.30715 3.38127 3.38331 3.41663 4.06831 4.35655 4.45700 4.45838 4.53474 4.74455 4.89030 4.92421 5.06156 5.12805 5.17248 5.24569 5.35391 5.43516 5.50846 5.52367 5.55923 5.69233 5.74714 5.76621 5.77343 5.84500 5.85327 5.87343 5.97679 6.03303 6.12488 6.22176 6.24311 6.55678 6.61576 6.65677 6.84818 7.05741 7.08063 7.66061 7.78984 7.98828 8.14385 8.39874 8.79727 9.03627 9.60733 11.10915 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021387 B = 0.003166 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.886172 B = 8843.130003 C = 9791.393973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.082 4.082 4 H 0.065 0.935 5 C -0.112 4.112 6 C -0.130 4.130 7 C 0.129 3.871 8 N -0.625 5.625 9 C 0.699 3.301 10 O -0.594 6.594 11 N -0.742 5.742 12 C 0.134 3.866 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.112 3.888 24 C -0.141 4.141 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.393 0.607 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.260 0.740 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.603 -6.293 -25.291 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.161 4.161 3 C -0.100 4.100 4 H 0.083 0.917 5 C -0.150 4.150 6 C -0.168 4.168 7 C 0.006 3.994 8 N -0.363 5.363 9 C 0.400 3.600 10 O -0.472 6.472 11 N -0.398 5.398 12 C 0.010 3.990 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.559 4.559 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.012 4.012 24 C -0.180 4.180 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.229 0.771 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.037 0.963 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.097 0.903 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.621 -6.226 -24.961 25.859 hybrid contribution -1.299 -0.025 0.641 1.449 sum -3.920 -6.252 -24.320 25.415 Atomic orbital electron populations 1.21883 0.95975 1.01562 1.01931 1.21707 0.95859 0.96584 1.01918 1.20070 0.95477 0.95973 0.98510 0.91712 1.21125 0.95110 0.97043 1.01683 1.21773 1.01800 0.95693 0.97554 1.21657 0.93049 0.98153 0.86569 1.46872 1.06411 1.78117 1.04855 1.16041 0.85438 0.77894 0.80644 1.90892 1.14387 1.58400 1.83533 1.45567 1.09077 1.77673 1.07446 1.21501 0.98004 1.01223 0.78236 1.21880 0.95747 1.00749 0.97397 1.19029 0.96700 0.97461 0.88191 1.21243 0.93100 1.49447 0.92138 0.92617 1.25034 0.95658 0.95358 0.98461 1.69980 1.19718 1.49584 1.13983 0.86533 0.82818 0.77604 0.81006 1.19766 1.21010 1.21022 1.21468 0.81274 0.96134 1.02356 1.21494 1.01520 0.95930 0.99025 0.92963 0.92162 0.92875 0.92215 0.92022 0.91378 0.91966 0.90767 0.91778 0.89106 0.92515 0.77101 0.91956 0.92109 0.92856 0.92830 0.96243 0.96262 0.92998 0.90744 0.90454 0.90282 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 9.52 37.16 0.35 -0.69 16 2 C -0.12 -0.90 5.25 -26.73 -0.14 -1.04 16 3 C -0.08 -0.62 1.71 -93.68 -0.16 -0.78 16 4 H 0.06 0.45 7.35 -51.93 -0.38 0.07 16 5 C -0.11 -0.95 4.93 -28.01 -0.14 -1.08 16 6 C -0.13 -1.00 5.71 -27.30 -0.16 -1.15 16 7 C 0.13 1.33 6.13 -2.94 -0.02 1.32 16 8 N -0.62 -7.38 2.24 -178.29 -0.40 -7.78 16 9 C 0.70 11.21 8.21 -86.93 -0.71 10.50 16 10 O -0.59 -11.98 15.62 5.28 0.08 -11.90 16 11 N -0.74 -11.35 5.39 -65.23 -0.35 -11.70 16 12 C 0.13 2.46 5.68 -4.05 -0.02 2.43 16 13 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 14 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 15 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 16 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 19 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 C 0.11 0.99 5.21 -4.11 -0.02 0.96 16 24 C -0.14 -1.16 4.75 -28.61 -0.14 -1.29 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.41 6.27 -51.93 -0.33 0.08 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.41 7.95 -51.93 -0.41 0.00 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.76 7.48 -51.93 -0.39 0.37 16 31 H 0.06 0.47 7.72 -51.93 -0.40 0.07 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.42 7.31 -51.93 -0.38 0.04 16 34 H 0.09 1.15 6.91 -51.93 -0.36 0.79 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.39 4.98 6.06 -40.82 -0.25 4.74 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.07 0.64 6.11 -51.92 -0.32 0.32 16 45 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16 46 H 0.08 0.55 5.97 -51.93 -0.31 0.24 16 47 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 LS Contribution 360.26 15.07 5.43 5.43 Total: -1.00 -32.49 360.26 -9.92 -42.42 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -8.56 Total: -0.47 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -1.84 Total: -6.30 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -0.01 Total: -45.71 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.08 Total: -11.90 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.49 -9.92 -42.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172335314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.997 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds