Wall clock time and date at job start Tue Mar 31 2020 05:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46794 * 2 1 4 4 H 1.08999 * 108.31709 * 57.38533 * 3 2 1 5 5 C 1.52573 * 108.51253 * 174.99833 * 3 2 1 6 6 C 1.50871 * 109.35539 * 206.27492 * 5 3 2 7 7 C 1.53947 * 110.09383 * 268.11334 * 6 5 3 8 8 N 1.47604 * 112.14684 * 40.56455 * 7 6 5 9 9 C 1.34781 * 118.64564 * 222.13537 * 8 7 6 10 10 O 1.21584 * 119.99584 * 4.83111 * 9 8 7 11 11 N 1.34776 * 120.00006 * 184.82659 * 9 8 7 12 12 C 1.46490 * 119.99839 * 174.87300 * 11 9 8 13 13 C 1.53006 * 109.47347 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47557 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47037 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99971 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99686 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99827 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 120.00152 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.46838 * 90.00156 * 19 17 15 21 21 H 1.48497 * 109.47073 * 210.00402 * 19 17 15 22 22 H 1.48494 * 109.47123 * 330.00116 * 19 17 15 23 23 C 1.44582 * 122.71205 * 42.40664 * 8 7 6 24 24 C 1.47100 * 108.51244 * 299.76384 * 3 2 1 25 25 H 1.09001 * 109.47099 * 60.00376 * 1 2 3 26 26 H 1.09000 * 109.47135 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47492 * 300.00152 * 1 2 3 28 28 H 1.09001 * 109.47207 * 240.00317 * 2 1 3 29 29 H 1.09001 * 109.47099 * 119.99624 * 2 1 3 30 30 H 1.09000 * 109.49084 * 86.30781 * 5 3 2 31 31 H 1.09003 * 109.50651 * 326.25367 * 5 3 2 32 32 H 1.08997 * 109.36986 * 147.92712 * 6 5 3 33 33 H 1.09000 * 109.37243 * 28.30160 * 6 5 3 34 34 H 1.09003 * 108.94978 * 279.87826 * 7 6 5 35 35 H 1.09008 * 108.95188 * 161.25035 * 7 6 5 36 36 H 0.97004 * 119.99884 * 354.87436 * 11 9 8 37 37 H 1.08996 * 109.47540 * 300.00314 * 12 11 9 38 38 H 1.09005 * 109.47445 * 60.00503 * 12 11 9 39 39 H 1.08996 * 109.47014 * 300.00583 * 13 12 11 40 40 H 1.09005 * 109.46480 * 59.99860 * 13 12 11 41 41 H 1.09004 * 109.47086 * 300.00308 * 14 13 12 42 42 H 1.09000 * 109.46546 * 60.00041 * 14 13 12 43 43 H 0.97004 * 119.99748 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.45090 * 29.04571 * 23 8 7 45 45 H 1.08994 * 109.45057 * 148.96523 * 23 8 7 46 46 H 1.08994 * 109.32892 * 296.20623 * 24 3 2 47 47 H 1.09004 * 109.32420 * 55.68625 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6282 1.9514 0.8716 5 6 3.5602 1.4189 0.1261 6 6 4.0294 2.7052 0.7599 7 6 4.3569 3.7427 -0.3293 8 7 3.3731 3.7239 -1.4295 9 6 3.8200 3.8186 -2.6976 10 8 5.0150 3.8285 -2.9218 11 7 2.9423 3.9022 -3.7169 12 6 3.4249 4.1180 -5.0831 13 6 2.2339 4.1744 -6.0419 14 6 2.7379 4.3991 -7.4689 15 6 1.5647 4.4552 -8.4130 16 1 0.5601 4.3416 -8.0333 17 6 1.7740 4.6507 -9.7617 18 7 0.7501 4.6992 -10.5857 19 14 3.5117 4.8466 -10.4186 20 1 4.0573 3.5137 -10.7801 21 1 3.4908 5.7160 -11.6222 22 1 4.3683 5.4658 -9.3755 23 6 1.9494 3.6137 -1.2029 24 6 1.5427 2.1137 -1.2109 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.0057 1.3174 -0.8635 31 1 3.8608 0.5760 0.7485 32 1 4.9224 2.5108 1.3539 33 1 3.2448 3.0964 1.4075 34 1 5.3459 3.5298 -0.7351 35 1 4.3668 4.7361 0.1196 36 1 1.9911 3.8195 -3.5459 37 1 3.9738 5.0585 -5.1304 38 1 4.0838 3.2981 -5.3696 39 1 1.6847 3.2341 -5.9948 40 1 1.5754 4.9944 -5.7553 41 1 3.2874 5.3393 -7.5163 42 1 3.3961 3.5787 -7.7550 43 1 0.8974 4.8371 -11.5346 44 1 1.7006 4.0530 -0.2369 45 1 1.4144 4.1438 -1.9908 46 1 1.9650 1.6291 -2.0911 47 1 0.4560 2.0361 -1.2458 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172335320.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:46 Heat of formation + Delta-G solvation = -54.921045 kcal Electronic energy + Delta-G solvation = -22885.850399 eV Core-core repulsion = 19681.634729 eV Total energy + Delta-G solvation = -3204.215670 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.66685 -38.48076 -35.73197 -35.08598 -33.73514 -32.82181 -31.21645 -30.77974 -27.67973 -26.63676 -25.29921 -23.40036 -22.68464 -21.26061 -20.56335 -20.33424 -19.20087 -18.00453 -16.81401 -16.40740 -16.00166 -15.22154 -15.07920 -14.89034 -14.70552 -14.22862 -14.01572 -13.84146 -13.45523 -13.12926 -13.06924 -12.68174 -12.61517 -12.45892 -12.06604 -11.89007 -11.85001 -11.60088 -11.26785 -11.07802 -11.02389 -10.87177 -10.75353 -10.63076 -10.51973 -10.16833 -9.95532 -9.79027 -9.64211 -9.21184 -8.92724 -8.54312 -8.47049 -6.05190 -4.03701 2.72555 3.31475 3.32773 3.40170 3.45022 4.00914 4.32960 4.42988 4.45869 4.51293 4.71447 4.86255 4.90393 5.03542 5.10987 5.15117 5.22189 5.29158 5.40704 5.48145 5.49759 5.53815 5.58464 5.70102 5.72492 5.73064 5.75568 5.82991 5.84649 5.95305 6.00372 6.07086 6.10972 6.21901 6.41625 6.49631 6.54849 6.73317 6.86111 6.99239 7.25537 7.38898 7.77201 8.07508 8.51542 8.72625 8.98714 9.57299 11.08068 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022309 B = 0.003274 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.771122 B = 8551.479809 C = 9389.054193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.123 4.123 3 C -0.082 4.082 4 H 0.065 0.935 5 C -0.112 4.112 6 C -0.130 4.130 7 C 0.129 3.871 8 N -0.624 5.624 9 C 0.699 3.301 10 O -0.595 6.595 11 N -0.742 5.742 12 C 0.132 3.868 13 C -0.112 4.112 14 C -0.011 4.011 15 C -0.521 4.521 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.904 5.904 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.264 1.264 23 C 0.111 3.889 24 C -0.140 4.140 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.395 0.605 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.019 0.981 42 H 0.015 0.985 43 H 0.263 0.737 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.598 -6.092 26.405 27.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.161 4.161 3 C -0.100 4.100 4 H 0.083 0.917 5 C -0.149 4.149 6 C -0.168 4.168 7 C 0.006 3.994 8 N -0.362 5.362 9 C 0.401 3.599 10 O -0.473 6.473 11 N -0.398 5.398 12 C 0.008 3.992 13 C -0.150 4.150 14 C -0.049 4.049 15 C -0.559 4.559 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.543 5.543 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.189 1.189 23 C -0.013 4.013 24 C -0.179 4.179 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.231 0.769 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.037 0.963 42 H 0.033 0.967 43 H 0.073 0.927 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.431 -6.029 26.051 26.850 hybrid contribution 0.233 0.015 -0.399 0.462 sum 2.664 -6.014 25.653 26.482 Atomic orbital electron populations 1.21883 0.95935 1.01596 1.01958 1.21710 0.95897 0.96558 1.01908 1.20071 0.95445 0.96008 0.98519 0.91690 1.21123 0.95135 0.97033 1.01646 1.21767 1.01833 0.95695 0.97527 1.21656 0.93000 0.98194 0.86569 1.46871 1.06464 1.78037 1.04810 1.16025 0.85389 0.77854 0.80668 1.90886 1.14388 1.58472 1.83578 1.45512 1.09204 1.77748 1.07306 1.21505 0.97931 1.01170 0.78592 1.21698 0.95808 1.01564 0.95961 1.19498 0.97399 0.96576 0.91397 1.21098 0.93611 1.49744 0.91465 0.91031 1.25027 0.96899 0.94568 0.96990 1.69915 1.30293 1.50383 1.03680 0.86775 0.85448 0.78480 0.78607 1.20243 1.21399 1.18857 1.21606 0.81140 0.96151 1.02417 1.21583 1.01561 0.95775 0.98976 0.92135 0.92943 0.92863 0.92037 0.92214 0.91416 0.91963 0.90777 0.91744 0.89129 0.92499 0.76925 0.92121 0.91976 0.92215 0.92212 0.96298 0.96719 0.92719 0.90388 0.90655 0.91406 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 9.52 37.16 0.35 -0.68 16 2 C -0.12 -0.88 5.25 -26.73 -0.14 -1.02 16 3 C -0.08 -0.60 1.71 -93.67 -0.16 -0.76 16 4 H 0.06 0.44 7.37 -51.93 -0.38 0.06 16 5 C -0.11 -0.91 4.93 -28.02 -0.14 -1.05 16 6 C -0.13 -0.96 5.71 -27.31 -0.16 -1.11 16 7 C 0.13 1.28 6.13 -2.94 -0.02 1.27 16 8 N -0.62 -7.09 2.23 -177.90 -0.40 -7.49 16 9 C 0.70 10.77 8.21 -86.91 -0.71 10.06 16 10 O -0.59 -11.55 15.62 5.29 0.08 -11.46 16 11 N -0.74 -10.82 5.38 -65.23 -0.35 -11.17 16 12 C 0.13 2.26 5.68 -4.04 -0.02 2.24 16 13 C -0.11 -2.12 5.27 -26.73 -0.14 -2.27 16 14 C -0.01 -0.25 4.04 -27.88 -0.11 -0.37 16 15 C -0.52 -14.75 9.66 -34.44 -0.33 -15.08 16 16 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 17 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 18 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 19 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 22 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 23 C 0.11 0.94 5.25 -3.78 -0.02 0.92 16 24 C -0.14 -1.12 4.76 -28.28 -0.13 -1.25 16 25 H 0.06 0.41 6.27 -51.93 -0.33 0.08 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.40 7.95 -51.93 -0.41 -0.01 16 30 H 0.07 0.73 7.48 -51.93 -0.39 0.34 16 31 H 0.06 0.46 7.72 -51.93 -0.40 0.06 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.41 7.32 -51.93 -0.38 0.03 16 34 H 0.09 1.10 6.91 -51.93 -0.36 0.74 16 35 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.39 4.78 6.07 -40.82 -0.25 4.54 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 42 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 45 H 0.08 0.62 6.12 -51.93 -0.32 0.30 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.08 0.54 5.97 -51.93 -0.31 0.23 16 LS Contribution 356.74 15.07 5.38 5.38 Total: -1.00 -32.84 356.74 -9.54 -42.38 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -8.53 Total: -0.51 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -1.83 Total: -7.27 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.03 Total: -45.74 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.08 Total: -11.46 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.84 -9.54 -42.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172335320.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.537 kcal (2) G-P(sol) polarization free energy of solvation -32.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds