Wall clock time and date at job start Tue Mar 31 2020 05:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46794 * 2 1 4 4 H 1.08999 * 108.31709 * 57.38533 * 3 2 1 5 5 C 1.52573 * 108.51253 * 174.99833 * 3 2 1 6 6 C 1.50871 * 109.35539 * 206.27492 * 5 3 2 7 7 C 1.53947 * 110.09383 * 268.11334 * 6 5 3 8 8 N 1.47604 * 112.14684 * 40.56455 * 7 6 5 9 9 C 1.34781 * 118.64564 * 222.13537 * 8 7 6 10 10 O 1.21584 * 119.99584 * 4.83111 * 9 8 7 11 11 N 1.34776 * 120.00006 * 184.82659 * 9 8 7 12 12 C 1.46490 * 119.99839 * 174.87300 * 11 9 8 13 13 C 1.53006 * 109.47347 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47557 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47037 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99971 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99686 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99827 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 120.00152 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.46838 * 90.00156 * 19 17 15 21 21 H 1.48497 * 109.47073 * 210.00402 * 19 17 15 22 22 H 1.48494 * 109.47123 * 330.00116 * 19 17 15 23 23 C 1.44582 * 122.71205 * 42.40664 * 8 7 6 24 24 C 1.47100 * 108.51244 * 299.76384 * 3 2 1 25 25 H 1.09001 * 109.47099 * 60.00376 * 1 2 3 26 26 H 1.09000 * 109.47135 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47492 * 300.00152 * 1 2 3 28 28 H 1.09001 * 109.47207 * 240.00317 * 2 1 3 29 29 H 1.09001 * 109.47099 * 119.99624 * 2 1 3 30 30 H 1.09000 * 109.49084 * 86.30781 * 5 3 2 31 31 H 1.09003 * 109.50651 * 326.25367 * 5 3 2 32 32 H 1.08997 * 109.36986 * 147.92712 * 6 5 3 33 33 H 1.09000 * 109.37243 * 28.30160 * 6 5 3 34 34 H 1.09003 * 108.94978 * 279.87826 * 7 6 5 35 35 H 1.09008 * 108.95188 * 161.25035 * 7 6 5 36 36 H 0.97004 * 119.99884 * 354.87436 * 11 9 8 37 37 H 1.08996 * 109.47540 * 300.00314 * 12 11 9 38 38 H 1.09005 * 109.47445 * 60.00503 * 12 11 9 39 39 H 1.08996 * 109.47014 * 300.00583 * 13 12 11 40 40 H 1.09005 * 109.46480 * 59.99860 * 13 12 11 41 41 H 1.09004 * 109.47086 * 300.00308 * 14 13 12 42 42 H 1.09000 * 109.46546 * 60.00041 * 14 13 12 43 43 H 0.97004 * 119.99748 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.45090 * 29.04571 * 23 8 7 45 45 H 1.08994 * 109.45057 * 148.96523 * 23 8 7 46 46 H 1.08994 * 109.32892 * 296.20623 * 24 3 2 47 47 H 1.09004 * 109.32420 * 55.68625 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6282 1.9514 0.8716 5 6 3.5602 1.4189 0.1261 6 6 4.0294 2.7052 0.7599 7 6 4.3569 3.7427 -0.3293 8 7 3.3731 3.7239 -1.4295 9 6 3.8200 3.8186 -2.6976 10 8 5.0150 3.8285 -2.9218 11 7 2.9423 3.9022 -3.7169 12 6 3.4249 4.1180 -5.0831 13 6 2.2339 4.1744 -6.0419 14 6 2.7379 4.3991 -7.4689 15 6 1.5647 4.4552 -8.4130 16 1 0.5601 4.3416 -8.0333 17 6 1.7740 4.6507 -9.7617 18 7 0.7501 4.6992 -10.5857 19 14 3.5117 4.8466 -10.4186 20 1 4.0573 3.5137 -10.7801 21 1 3.4908 5.7160 -11.6222 22 1 4.3683 5.4658 -9.3755 23 6 1.9494 3.6137 -1.2029 24 6 1.5427 2.1137 -1.2109 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.0057 1.3174 -0.8635 31 1 3.8608 0.5760 0.7485 32 1 4.9224 2.5108 1.3539 33 1 3.2448 3.0964 1.4075 34 1 5.3459 3.5298 -0.7351 35 1 4.3668 4.7361 0.1196 36 1 1.9911 3.8195 -3.5459 37 1 3.9738 5.0585 -5.1304 38 1 4.0838 3.2981 -5.3696 39 1 1.6847 3.2341 -5.9948 40 1 1.5754 4.9944 -5.7553 41 1 3.2874 5.3393 -7.5163 42 1 3.3961 3.5787 -7.7550 43 1 0.8974 4.8371 -11.5346 44 1 1.7006 4.0530 -0.2369 45 1 1.4144 4.1438 -1.9908 46 1 1.9650 1.6291 -2.0911 47 1 0.4560 2.0361 -1.2458 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172335320.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:45 Heat of formation + Delta-G solvation = -74.303107 kcal Electronic energy + Delta-G solvation = -22886.690869 eV Core-core repulsion = 19681.634729 eV Total energy + Delta-G solvation = -3205.056140 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.66278 -39.36669 -37.10405 -36.06392 -35.26613 -34.08877 -32.87867 -31.44196 -29.13043 -27.71382 -26.05173 -24.74944 -23.71380 -22.23381 -22.11221 -21.00772 -20.29988 -19.15612 -18.73987 -17.53778 -17.04130 -16.36587 -16.20562 -15.91844 -15.69599 -15.49078 -15.25335 -14.88030 -14.76882 -14.26974 -13.93009 -13.82453 -13.68505 -13.65064 -13.24291 -13.06865 -12.77963 -12.71619 -12.58341 -12.25072 -11.91123 -11.87276 -11.78581 -11.74840 -11.59819 -11.37667 -11.32907 -11.24454 -11.19004 -11.01834 -10.75917 -10.18757 -9.43861 -8.29196 -6.32837 1.37153 1.38639 1.50672 1.69018 2.12031 2.36665 2.98952 3.06643 3.68544 3.80200 3.89679 4.03571 4.10414 4.19348 4.20952 4.29028 4.40906 4.49877 4.51181 4.55801 4.62294 4.73503 4.81131 4.87401 4.89462 4.91065 4.94919 5.01523 5.03866 5.14692 5.18910 5.22792 5.26012 5.32174 5.38553 5.41993 5.51794 5.54108 5.55873 5.59504 5.64952 5.73300 5.94050 6.27857 6.74845 6.98625 7.31978 7.55420 8.87189 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022309 B = 0.003274 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.771122 B = 8551.479809 C = 9389.054193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.080 4.080 4 H 0.084 0.916 5 C -0.110 4.110 6 C -0.120 4.120 7 C 0.124 3.876 8 N -0.614 5.614 9 C 0.693 3.307 10 O -0.640 6.640 11 N -0.734 5.734 12 C 0.146 3.854 13 C -0.098 4.098 14 C -0.011 4.011 15 C -0.529 4.529 16 H 0.038 0.962 17 C 0.006 3.994 18 N -0.950 5.950 19 Si 0.946 3.054 20 H -0.268 1.268 21 H -0.284 1.284 22 H -0.248 1.248 23 C 0.105 3.895 24 C -0.135 4.135 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.044 0.956 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.408 0.592 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.021 0.979 42 H 0.018 0.982 43 H 0.266 0.734 44 H 0.105 0.895 45 H 0.079 0.921 46 H 0.042 0.958 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.835 -5.957 28.714 29.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.098 4.098 4 H 0.102 0.898 5 C -0.148 4.148 6 C -0.158 4.158 7 C 0.002 3.998 8 N -0.350 5.350 9 C 0.395 3.605 10 O -0.523 6.523 11 N -0.391 5.391 12 C 0.021 3.979 13 C -0.136 4.136 14 C -0.049 4.049 15 C -0.567 4.567 16 H 0.057 0.943 17 C -0.191 4.191 18 N -0.591 5.591 19 Si 0.770 3.230 20 H -0.193 1.193 21 H -0.210 1.210 22 H -0.172 1.172 23 C -0.018 4.018 24 C -0.174 4.174 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.246 0.754 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.037 0.963 43 H 0.075 0.925 44 H 0.123 0.877 45 H 0.097 0.903 46 H 0.060 0.940 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.626 -5.905 28.417 29.142 hybrid contribution 0.069 -0.061 -1.057 1.061 sum 2.696 -5.966 27.360 28.132 Atomic orbital electron populations 1.21873 0.95327 1.01742 1.02307 1.21687 0.96389 0.96416 1.01437 1.20064 0.94773 0.96170 0.98802 0.89807 1.21109 0.95684 0.97984 1.00029 1.21734 1.03149 0.94277 0.96669 1.21807 0.91477 0.99947 0.86589 1.46953 1.08024 1.76505 1.03555 1.16231 0.84721 0.77719 0.81869 1.90852 1.16348 1.60561 1.84490 1.45253 1.09883 1.77695 1.06299 1.21135 0.96715 1.00451 0.79597 1.21463 0.96352 1.01955 0.93798 1.19457 0.95694 0.96737 0.93046 1.21449 0.93822 1.48950 0.92529 0.94321 1.25963 1.01363 0.94387 0.97422 1.70055 1.32842 1.51988 1.04188 0.85713 0.80130 0.78921 0.78255 1.19308 1.20957 1.17193 1.21874 0.79154 0.96733 1.04038 1.21549 1.02372 0.95166 0.98278 0.92431 0.93009 0.91778 0.93717 0.91533 0.94724 0.91057 0.89520 0.89548 0.91941 0.91059 0.75388 0.92777 0.93028 0.91876 0.91636 0.96057 0.96324 0.92500 0.87669 0.90268 0.93957 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.52 71.98 0.69 -1.05 16 2 C -0.12 -1.54 5.25 30.59 0.16 -1.38 16 3 C -0.08 -0.98 1.71 -12.77 -0.02 -1.01 16 4 H 0.08 0.78 7.37 -2.39 -0.02 0.76 16 5 C -0.11 -1.63 4.93 29.76 0.15 -1.48 16 6 C -0.12 -1.47 5.71 30.22 0.17 -1.29 16 7 C 0.12 2.31 6.13 86.49 0.53 2.84 16 8 N -0.61 -13.20 2.23 -835.01 -1.86 -15.06 16 9 C 0.69 21.18 8.21 179.05 1.47 22.64 16 10 O -0.64 -25.29 15.62 -3.98 -0.06 -25.36 16 11 N -0.73 -20.90 5.38 -478.54 -2.58 -23.48 16 12 C 0.15 4.93 5.68 86.38 0.49 5.42 16 13 C -0.10 -3.63 5.27 30.60 0.16 -3.46 16 14 C -0.01 -0.53 4.04 29.85 0.12 -0.40 16 15 C -0.53 -30.27 9.66 25.60 0.25 -30.02 16 16 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 17 C 0.01 0.32 5.47 84.65 0.46 0.79 16 18 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 19 Si 0.95 44.82 27.47 68.60 1.88 46.71 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 23 C 0.11 1.52 5.25 87.57 0.46 1.98 16 24 C -0.14 -1.90 4.76 29.59 0.14 -1.76 16 25 H 0.06 0.67 6.27 -2.39 -0.01 0.65 16 26 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.76 7.95 -2.39 -0.02 0.74 16 30 H 0.03 0.75 7.48 -2.39 -0.02 0.73 16 31 H 0.07 0.92 7.72 -2.39 -0.02 0.90 16 32 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 0.73 7.32 -2.39 -0.02 0.71 16 34 H 0.06 1.54 6.91 -2.39 -0.02 1.52 16 35 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.41 9.36 6.07 -92.71 -0.56 8.80 16 37 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 38 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 41 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 42 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 43 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 44 H 0.11 1.03 8.07 -2.39 -0.02 1.01 16 45 H 0.08 1.11 6.12 -2.39 -0.01 1.09 16 46 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.09 1.06 5.97 -2.39 -0.01 1.05 16 Total: -1.00 -72.40 356.74 3.22 -69.18 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.31 Total: 15.46 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 5.23 Total: -8.18 kcal Atomic # 7 Polarization: -93.68 SS G_CDS: -4.14 Total: -97.82 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.06 Total: -25.36 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.71 kcal Total: -72.40 3.22 -69.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172335320.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.119 kcal (2) G-P(sol) polarization free energy of solvation -72.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds