Wall clock time and date at job start Tue Mar 31 2020 05:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47185 * 2 1 4 4 H 1.09003 * 109.47047 * 55.00067 * 3 2 1 5 5 C 1.53006 * 109.47070 * 295.00118 * 3 2 1 6 6 C 1.53000 * 109.47070 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47088 * 59.99674 * 6 5 3 8 8 C 1.52992 * 109.47112 * 299.99902 * 7 6 5 9 9 H 1.09003 * 109.47469 * 299.99998 * 8 7 6 10 10 N 1.46500 * 109.46884 * 179.97438 * 8 7 6 11 11 C 1.34782 * 120.00016 * 85.00236 * 10 8 7 12 12 O 1.21587 * 120.00080 * 359.97438 * 11 10 8 13 13 N 1.34775 * 120.00074 * 180.02562 * 11 10 8 14 14 C 1.46499 * 120.00181 * 179.97438 * 13 11 10 15 15 C 1.52992 * 109.47367 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.47319 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47208 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99770 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00083 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00147 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00278 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47228 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46793 * 300.00001 * 21 19 17 24 24 H 1.48500 * 109.47000 * 60.00094 * 21 19 17 25 25 C 1.52994 * 109.47261 * 60.00321 * 8 7 6 26 26 H 1.09002 * 109.47320 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47342 * 300.00117 * 1 2 3 28 28 H 1.09001 * 109.47399 * 60.00028 * 1 2 3 29 29 H 1.08994 * 109.47283 * 240.00201 * 2 1 3 30 30 H 1.08999 * 109.47235 * 119.99461 * 2 1 3 31 31 H 1.08997 * 109.46721 * 300.00031 * 5 3 2 32 32 H 1.09001 * 109.46879 * 59.99957 * 5 3 2 33 33 H 1.08996 * 109.46798 * 180.02562 * 6 5 3 34 34 H 1.09003 * 109.47047 * 299.99949 * 6 5 3 35 35 H 1.09000 * 109.46754 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.46952 * 60.00217 * 7 6 5 37 37 H 0.97002 * 120.00099 * 264.99890 * 10 8 7 38 38 H 0.97002 * 120.00040 * 359.97438 * 13 11 10 39 39 H 1.09009 * 109.46700 * 59.99666 * 14 13 11 40 40 H 1.08998 * 109.47265 * 299.99934 * 14 13 11 41 41 H 1.09000 * 109.47364 * 60.00026 * 15 14 13 42 42 H 1.08998 * 109.47610 * 300.00088 * 15 14 13 43 43 H 1.08994 * 109.47074 * 60.00408 * 16 15 14 44 44 H 1.08998 * 109.47285 * 300.00244 * 16 15 14 45 45 H 0.97005 * 119.99661 * 359.97438 * 20 19 17 46 46 H 1.08997 * 109.47470 * 59.99795 * 25 8 7 47 47 H 1.09003 * 109.47439 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 2.1447 3.5692 -1.3071 7 6 3.6695 3.5716 -1.1810 8 6 4.0742 2.8876 0.1263 9 1 3.6392 3.4264 0.9681 10 7 5.5342 2.8894 0.2467 11 6 6.1666 3.9620 0.7627 12 8 5.5253 4.9283 1.1279 13 7 7.5098 3.9638 0.8730 14 6 8.1972 5.1298 1.4334 15 6 9.7057 4.8749 1.4468 16 6 10.4235 6.0925 2.0327 17 6 11.9095 5.8416 2.0453 18 1 12.3025 4.9074 1.6723 19 6 12.7671 6.8047 2.5330 20 7 12.2884 7.9421 2.9876 21 14 14.6090 6.4941 2.5479 22 1 15.3057 7.6757 3.1167 23 1 14.9026 5.2985 3.3784 24 1 15.0830 6.2612 1.1600 25 6 3.5648 1.4450 0.1260 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.0698 1.5875 -2.1491 32 1 0.5489 2.1252 -1.3969 33 1 1.8559 4.0566 -2.2383 34 1 1.7097 4.1080 -0.4653 35 1 4.0324 4.5994 -1.1813 36 1 4.1045 3.0328 -2.0229 37 1 6.0458 2.1186 -0.0450 38 1 8.0214 3.1930 0.5813 39 1 7.8490 5.3020 2.4520 40 1 7.9820 6.0067 0.8228 41 1 10.0541 4.7025 0.4285 42 1 9.9207 3.9982 2.0577 43 1 10.0751 6.2644 3.0511 44 1 10.2087 6.9695 1.4222 45 1 11.3319 8.1036 2.9795 46 1 3.9998 0.9062 -0.7157 47 1 3.8535 0.9575 1.0572 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172700438.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:56 Heat of formation + Delta-G solvation = -87.233383 kcal Electronic energy + Delta-G solvation = -21909.908524 eV Core-core repulsion = 18704.291686 eV Total energy + Delta-G solvation = -3205.616838 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.25270 -38.83503 -35.72426 -34.84602 -33.61430 -33.16852 -31.16765 -30.10024 -28.74488 -26.15503 -24.20094 -23.11135 -22.53563 -21.24519 -20.85813 -20.47265 -20.03521 -18.03958 -16.85515 -16.36097 -15.56819 -15.39307 -15.20880 -14.55458 -14.43244 -14.29652 -13.83446 -13.80348 -13.71795 -13.68634 -13.08489 -12.89628 -12.65096 -12.10194 -11.83620 -11.71760 -11.59929 -11.56288 -11.43931 -11.12290 -10.85762 -10.84254 -10.78394 -10.58881 -10.42279 -10.19911 -10.07506 -9.98661 -9.74601 -9.15805 -8.62843 -8.56339 -8.32501 -6.35666 -4.05297 2.79891 3.36747 3.43795 3.45918 3.64836 4.25175 4.28869 4.37554 4.54982 4.58466 4.74233 4.80327 4.89812 5.03643 5.10076 5.15710 5.23928 5.30760 5.35370 5.41440 5.41492 5.56360 5.61235 5.63369 5.70555 5.73284 5.78783 5.81017 5.84359 5.95464 6.02400 6.07983 6.09224 6.17924 6.45709 6.51928 6.53124 6.74895 6.90107 7.06686 7.38030 7.50615 8.15130 8.19988 8.45889 8.75826 8.88405 9.67241 11.05050 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.049295 B = 0.002203 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.870329 B =12704.818174 C =12955.538233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.084 4.084 4 H 0.073 0.927 5 C -0.116 4.116 6 C -0.117 4.117 7 C -0.130 4.130 8 C 0.165 3.835 9 H 0.086 0.914 10 N -0.748 5.748 11 C 0.700 3.300 12 O -0.593 6.593 13 N -0.743 5.743 14 C 0.135 3.865 15 C -0.113 4.113 16 C 0.010 3.990 17 C -0.603 4.603 18 H 0.048 0.952 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 1.070 2.930 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.288 1.288 25 C -0.121 4.121 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.393 0.607 38 H 0.394 0.606 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.010 0.990 44 H 0.010 0.990 45 H 0.269 0.731 46 H 0.067 0.933 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.596 -17.373 -9.265 29.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.103 4.103 4 H 0.092 0.908 5 C -0.153 4.153 6 C -0.155 4.155 7 C -0.169 4.169 8 C 0.060 3.940 9 H 0.104 0.896 10 N -0.403 5.403 11 C 0.400 3.600 12 O -0.471 6.471 13 N -0.397 5.397 14 C 0.012 3.988 15 C -0.151 4.151 16 C -0.027 4.027 17 C -0.642 4.642 18 H 0.067 0.933 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.898 3.102 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.215 1.215 25 C -0.159 4.159 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.226 0.774 38 H 0.227 0.773 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.029 0.971 44 H 0.028 0.972 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.713 -15.763 -8.488 28.142 hybrid contribution -0.932 -1.452 -0.743 1.879 sum -22.646 -17.215 -9.231 29.906 Atomic orbital electron populations 1.21823 0.95843 1.01496 1.01998 1.21555 0.95954 0.96127 1.02010 1.21134 0.94430 0.96144 0.98594 0.90838 1.21673 1.00706 0.95730 0.97233 1.21496 0.95302 0.96642 1.02094 1.21953 0.95813 1.01707 0.97453 1.20753 0.78752 0.95999 0.98480 0.89562 1.45227 1.07454 1.18793 1.68837 1.16036 0.82170 0.83175 0.78614 1.90910 1.65652 1.34613 1.55960 1.45363 1.04817 1.21326 1.68208 1.21482 0.92755 0.86441 0.98150 1.21747 0.90913 1.01361 1.01103 1.19157 0.95818 0.92350 0.95389 1.22014 0.91658 1.04474 1.46028 0.93321 1.25873 1.06490 0.93135 0.93555 1.70777 1.16272 1.24294 1.43430 0.83531 0.74540 0.75746 0.76366 1.20751 1.21471 1.21481 1.21862 0.95835 0.95728 1.02474 0.92925 0.92721 0.92454 0.91996 0.91969 0.91974 0.91672 0.91807 0.91723 0.91272 0.92053 0.77383 0.77337 0.92086 0.92083 0.92617 0.92615 0.97146 0.97154 0.92009 0.91467 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.67 37.16 0.36 -0.45 16 2 C -0.12 -0.67 5.40 -26.73 -0.14 -0.82 16 3 C -0.08 -0.55 2.19 -90.62 -0.20 -0.75 16 4 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 5 C -0.12 -0.75 4.96 -26.73 -0.13 -0.88 16 6 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 7 C -0.13 -1.28 5.49 -26.73 -0.15 -1.43 16 8 C 0.17 1.67 2.45 -67.94 -0.17 1.51 16 9 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 10 N -0.75 -8.28 5.08 -58.68 -0.30 -8.58 16 11 C 0.70 10.91 8.53 -86.91 -0.74 10.17 16 12 O -0.59 -11.80 16.01 5.29 0.08 -11.72 16 13 N -0.74 -11.05 5.56 -65.23 -0.36 -11.42 16 14 C 0.14 2.46 5.67 -4.05 -0.02 2.44 16 15 C -0.11 -2.27 5.27 -26.73 -0.14 -2.41 16 16 C 0.01 0.27 4.28 -27.88 -0.12 0.15 16 17 C -0.60 -17.25 9.11 -34.44 -0.31 -17.56 16 18 H 0.05 1.35 7.74 -52.49 -0.41 0.95 16 19 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 20 N -0.91 -28.30 13.65 55.43 0.76 -27.54 16 21 Si 1.07 25.38 29.90 -169.99 -5.08 20.29 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 C -0.12 -0.87 4.67 -26.73 -0.12 -1.00 16 26 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.29 6.57 -51.93 -0.34 -0.05 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.39 3.22 8.62 -40.82 -0.35 2.86 16 38 H 0.39 4.67 8.49 -40.82 -0.35 4.33 16 39 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.01 0.28 8.01 -51.93 -0.42 -0.14 16 44 H 0.01 0.27 8.01 -51.93 -0.42 -0.14 16 45 H 0.27 8.35 7.22 -40.82 -0.29 8.05 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 369.67 15.07 5.57 5.57 Total: -1.00 -33.49 369.67 -10.35 -43.84 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -8.87 Total: 1.40 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -2.15 Total: -11.84 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: 0.10 Total: -47.54 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.08 Total: -11.72 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.08 Total: 20.29 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.49 -10.35 -43.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172700438.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.398 kcal (2) G-P(sol) polarization free energy of solvation -33.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds