Wall clock time and date at job start Tue Mar 31 2020 05:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47192 * 2 1 4 4 H 1.08992 * 109.47280 * 305.00193 * 3 2 1 5 5 C 1.53002 * 109.46978 * 65.00120 * 3 2 1 6 6 C 1.52997 * 109.46978 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.47164 * 299.99874 * 6 5 3 8 8 C 1.52997 * 109.47127 * 59.99836 * 7 6 5 9 9 H 1.09002 * 109.47153 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.47007 * 60.00219 * 8 7 6 11 11 C 1.34777 * 120.00075 * 84.99755 * 10 8 7 12 12 O 1.21587 * 119.99681 * 0.02562 * 11 10 8 13 13 N 1.34775 * 120.00044 * 179.97438 * 11 10 8 14 14 C 1.46500 * 119.99839 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.46984 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.47024 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47013 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00576 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99949 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00333 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00149 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47062 * 59.99494 * 21 19 17 23 23 H 1.48498 * 109.47267 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46757 * 299.99816 * 21 19 17 25 25 C 1.52996 * 109.46975 * 184.99658 * 3 2 1 26 26 H 1.09002 * 109.47097 * 59.99849 * 1 2 3 27 27 H 1.09004 * 109.47334 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47375 * 299.99853 * 1 2 3 29 29 H 1.08994 * 109.47001 * 239.99636 * 2 1 3 30 30 H 1.09000 * 109.46593 * 120.00131 * 2 1 3 31 31 H 1.09001 * 109.47142 * 59.99766 * 5 3 2 32 32 H 1.09002 * 109.47097 * 299.99801 * 5 3 2 33 33 H 1.09000 * 109.47140 * 179.97438 * 6 5 3 34 34 H 1.09001 * 109.47375 * 59.99908 * 6 5 3 35 35 H 1.08998 * 109.46505 * 299.99708 * 7 6 5 36 36 H 1.08996 * 109.46884 * 180.02562 * 7 6 5 37 37 H 0.96997 * 120.00274 * 264.99726 * 10 8 7 38 38 H 0.96997 * 120.00305 * 0.02562 * 13 11 10 39 39 H 1.08998 * 109.47120 * 300.00352 * 14 13 11 40 40 H 1.09002 * 109.47331 * 59.99749 * 14 13 11 41 41 H 1.08997 * 109.47026 * 299.99528 * 15 14 13 42 42 H 1.08996 * 109.47259 * 60.00290 * 15 14 13 43 43 H 1.08998 * 109.47126 * 300.00142 * 16 15 14 44 44 H 1.09005 * 109.46944 * 59.99883 * 16 15 14 45 45 H 0.97003 * 120.00508 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.47368 * 60.00217 * 25 3 2 47 47 H 1.09001 * 109.47372 * 300.00372 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 2.1447 3.5691 1.3071 7 6 3.6696 3.5715 1.1811 8 6 4.0744 2.8875 -0.1262 9 1 5.1607 2.8888 -0.2158 10 7 3.4897 3.6116 -1.2576 11 6 4.1246 4.6832 -1.7724 12 8 5.1828 5.0487 -1.2980 13 7 3.5870 5.3491 -2.8136 14 6 4.2775 6.5136 -3.3734 15 6 3.4607 7.0803 -4.5364 16 6 4.1814 8.2969 -5.1207 17 6 3.3772 8.8547 -6.2666 18 1 2.4450 8.3885 -6.5496 19 6 3.8314 9.9604 -6.9538 20 7 4.9663 10.5285 -6.6090 21 14 2.8342 10.6523 -8.3738 22 1 1.4929 11.0602 -7.8842 23 1 3.5338 11.8330 -8.9410 24 1 2.6829 9.6140 -9.4246 25 6 3.5648 1.4442 -0.1256 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 2.0699 1.5874 2.1492 32 1 0.5489 2.1252 1.3969 33 1 1.8560 4.0566 2.2383 34 1 1.7098 4.1080 0.4653 35 1 4.1045 3.0328 2.0229 36 1 4.0325 4.5993 1.1814 37 1 2.6457 3.3198 -1.6363 38 1 2.7430 5.0574 -3.1922 39 1 4.3882 7.2758 -2.6022 40 1 5.2622 6.2143 -3.7324 41 1 3.3497 6.3183 -5.3078 42 1 2.4762 7.3798 -4.1770 43 1 4.2921 9.0588 -4.3492 44 1 5.1662 7.9979 -5.4800 45 1 5.2857 11.3066 -7.0922 46 1 3.8533 0.9569 -1.0570 47 1 3.9994 0.9051 0.7162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172700443.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:59 Heat of formation + Delta-G solvation = -79.791687 kcal Electronic energy + Delta-G solvation = -22287.217920 eV Core-core repulsion = 19081.923778 eV Total energy + Delta-G solvation = -3205.294142 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.40529 -38.71285 -35.51880 -34.67601 -33.35618 -32.84878 -31.21245 -30.13847 -28.96185 -26.50651 -24.18572 -23.18775 -22.63938 -21.07763 -21.02685 -20.50561 -19.22580 -18.04256 -16.48057 -16.04630 -15.78609 -15.40348 -15.14774 -14.63612 -14.44796 -14.35422 -14.06127 -13.85881 -13.58190 -13.37075 -12.95507 -12.41863 -12.31679 -12.24050 -12.03454 -11.77792 -11.69813 -11.66205 -11.38154 -11.15025 -10.87143 -10.77602 -10.69094 -10.60333 -10.39218 -10.19795 -10.01612 -9.82858 -9.41066 -9.11675 -9.08465 -8.53734 -8.35297 -5.99987 -4.03141 2.90803 3.32959 3.37685 3.39626 3.45013 4.29718 4.37078 4.42479 4.43554 4.48996 4.82170 4.82608 4.95756 5.06070 5.14468 5.16949 5.31009 5.35548 5.35895 5.36245 5.48464 5.58410 5.66583 5.71228 5.73750 5.76308 5.85198 5.87014 5.91813 5.97505 6.07973 6.12457 6.18035 6.22434 6.58380 6.61415 6.65861 6.86183 7.05849 7.15512 7.65677 7.79133 7.98975 8.23249 8.39969 8.84155 9.03391 9.60795 11.11276 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027380 B = 0.002588 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.386397 B =10817.842218 C =11374.957889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.088 4.088 4 H 0.068 0.932 5 C -0.114 4.114 6 C -0.118 4.118 7 C -0.132 4.132 8 C 0.166 3.834 9 H 0.087 0.913 10 N -0.744 5.744 11 C 0.700 3.300 12 O -0.594 6.594 13 N -0.743 5.743 14 C 0.136 3.864 15 C -0.120 4.120 16 C 0.024 3.976 17 C -0.523 4.523 18 H 0.054 0.946 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C -0.122 4.122 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.392 0.608 38 H 0.392 0.608 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.262 0.738 46 H 0.068 0.932 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.108 -21.925 16.104 28.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.107 4.107 4 H 0.087 0.913 5 C -0.152 4.152 6 C -0.156 4.156 7 C -0.171 4.171 8 C 0.060 3.940 9 H 0.105 0.895 10 N -0.401 5.401 11 C 0.399 3.601 12 O -0.472 6.472 13 N -0.397 5.397 14 C 0.012 3.988 15 C -0.158 4.158 16 C -0.013 4.013 17 C -0.561 4.561 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.160 4.160 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.226 0.774 38 H 0.225 0.775 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.071 0.929 46 H 0.087 0.913 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.974 -21.412 16.488 27.910 hybrid contribution -1.318 0.229 -1.185 1.787 sum -8.292 -21.183 15.303 27.416 Atomic orbital electron populations 1.21829 0.95896 1.01487 1.02000 1.21566 0.95922 0.96216 1.01988 1.21189 0.95233 0.95973 0.98315 0.91348 1.21649 1.00594 0.95796 0.97146 1.21489 0.95837 0.96434 1.01797 1.21944 0.96037 1.01907 0.97168 1.20718 0.98543 0.89872 0.84840 0.89523 1.45260 1.26519 1.31784 1.36500 1.16054 0.83726 0.79994 0.80292 1.90907 1.23032 1.69442 1.63861 1.45393 1.26630 1.33078 1.34645 1.21484 0.96012 0.85231 0.96040 1.21884 0.98956 0.99948 0.95015 1.19023 0.95708 0.91029 0.95587 1.21171 1.06956 1.12582 1.15389 0.92728 1.25030 0.95093 0.96842 0.97498 1.69955 1.20356 1.21923 1.41049 0.86644 0.80191 0.78485 0.82576 1.20265 1.21274 1.20258 1.21905 0.95603 0.95648 1.02837 0.92722 0.92962 0.92477 0.91993 0.92000 0.92003 0.91863 0.92201 0.91923 0.91388 0.91213 0.77378 0.77470 0.92051 0.92036 0.92819 0.92828 0.96262 0.96261 0.92873 0.91283 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.67 37.16 0.36 -0.49 16 2 C -0.12 -0.67 5.40 -26.73 -0.14 -0.82 16 3 C -0.09 -0.55 2.02 -90.62 -0.18 -0.74 16 4 H 0.07 0.45 6.50 -51.93 -0.34 0.11 16 5 C -0.11 -0.75 4.96 -26.73 -0.13 -0.88 16 6 C -0.12 -0.97 5.77 -26.73 -0.15 -1.12 16 7 C -0.13 -1.27 5.60 -26.73 -0.15 -1.42 16 8 C 0.17 1.64 2.78 -67.90 -0.19 1.45 16 9 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 10 N -0.74 -8.15 4.24 -58.65 -0.25 -8.39 16 11 C 0.70 10.83 8.53 -86.92 -0.74 10.09 16 12 O -0.59 -11.78 16.01 5.29 0.08 -11.69 16 13 N -0.74 -11.03 5.56 -65.23 -0.36 -11.39 16 14 C 0.14 2.47 5.67 -4.04 -0.02 2.45 16 15 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 16 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 17 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 18 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 21 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C -0.12 -0.86 4.89 -26.71 -0.13 -0.99 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.31 6.57 -51.93 -0.34 -0.03 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.39 6.57 -51.93 -0.34 0.05 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.57 7.60 -51.93 -0.39 0.18 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.39 3.35 6.88 -40.82 -0.28 3.07 16 38 H 0.39 4.67 8.49 -40.82 -0.35 4.32 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 366.55 15.07 5.52 5.52 Total: -1.00 -32.45 366.55 -10.21 -42.66 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -8.74 Total: 0.99 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -2.18 Total: -7.99 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.13 Total: -46.07 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.08 Total: -11.69 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.45 -10.21 -42.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172700443.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.132 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds