Wall clock time and date at job start Tue Mar 31 2020 05:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46912 * 2 1 4 4 H 1.08997 * 109.47203 * 55.00831 * 3 2 1 5 5 C 1.53002 * 109.47696 * 295.00355 * 3 2 1 6 6 C 1.52990 * 109.47432 * 179.97438 * 5 3 2 7 7 C 1.53010 * 109.47006 * 60.00003 * 6 5 3 8 8 C 1.52995 * 109.47121 * 299.99755 * 7 6 5 9 9 H 1.08997 * 109.46977 * 179.97438 * 8 7 6 10 10 N 1.46490 * 109.47438 * 300.00013 * 8 7 6 11 11 C 1.34773 * 120.00326 * 274.99882 * 10 8 7 12 12 O 1.21591 * 120.00000 * 359.97438 * 11 10 8 13 13 N 1.34777 * 120.00462 * 179.97438 * 11 10 8 14 14 C 1.46500 * 120.00376 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47473 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46735 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99928 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99611 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00327 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99743 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46725 * 60.00093 * 21 19 17 23 23 H 1.48505 * 109.46988 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47116 * 300.00069 * 21 19 17 25 25 C 1.53000 * 109.46938 * 175.00250 * 3 2 1 26 26 H 1.09005 * 109.47135 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46840 * 299.99264 * 1 2 3 28 28 H 1.08996 * 109.47920 * 59.99414 * 1 2 3 29 29 H 1.09001 * 109.46840 * 240.00736 * 2 1 3 30 30 H 1.08992 * 109.47444 * 120.00600 * 2 1 3 31 31 H 1.09000 * 109.46922 * 300.00042 * 5 3 2 32 32 H 1.08997 * 109.46522 * 59.99692 * 5 3 2 33 33 H 1.08995 * 109.47510 * 179.97438 * 6 5 3 34 34 H 1.08997 * 109.47386 * 300.00428 * 6 5 3 35 35 H 1.09002 * 109.46634 * 179.97438 * 7 6 5 36 36 H 1.08999 * 109.46675 * 60.00547 * 7 6 5 37 37 H 0.97004 * 120.00364 * 94.99875 * 10 8 7 38 38 H 0.97004 * 120.00228 * 0.02562 * 13 11 10 39 39 H 1.09002 * 109.47129 * 59.99747 * 14 13 11 40 40 H 1.08998 * 109.46845 * 300.00553 * 14 13 11 41 41 H 1.09002 * 109.47153 * 59.99757 * 15 14 13 42 42 H 1.09001 * 109.46832 * 299.99948 * 15 14 13 43 43 H 1.09001 * 109.47194 * 299.99650 * 16 15 14 44 44 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 45 45 H 0.97000 * 120.00354 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.47194 * 60.00255 * 25 3 2 47 47 H 1.08999 * 109.47353 * 300.00537 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6351 2.1267 -1.3073 6 6 2.1445 3.5693 -1.3069 7 6 3.6694 3.5717 -1.1810 8 6 4.0742 2.8876 0.1263 9 1 5.1605 2.8889 0.2158 10 7 3.4897 3.6116 1.2577 11 6 4.1246 4.6832 1.7726 12 8 5.1828 5.0488 1.2983 13 7 3.5865 5.3496 2.8132 14 6 4.2764 6.5148 3.3725 15 6 3.4598 7.0812 4.5357 16 6 4.1800 8.2985 5.1193 17 6 3.3758 8.8560 6.2655 18 1 2.4442 8.3892 6.5489 19 6 3.8297 9.9622 6.9521 20 7 4.9645 10.5303 6.6073 21 14 2.8326 10.6537 8.3724 22 1 2.6825 9.6155 9.4235 23 1 3.5323 11.8344 8.9398 24 1 1.4909 11.0607 7.8833 25 6 3.5647 1.4443 0.1257 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3635 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8898 31 1 2.0697 1.5877 -2.1491 32 1 0.5488 2.1253 -1.3967 33 1 1.8565 4.0566 -2.2384 34 1 1.7096 4.1080 -0.4651 35 1 4.0323 4.5995 -1.1812 36 1 4.1043 3.0330 -2.0229 37 1 2.6456 3.3198 1.6364 38 1 2.7425 5.0578 3.1919 39 1 4.3870 7.2766 2.6007 40 1 5.2611 6.2160 3.7318 41 1 3.3495 6.3193 5.3073 42 1 2.4749 7.3799 4.1766 43 1 5.1650 8.0002 5.4782 44 1 4.2898 9.0602 4.3475 45 1 5.2840 11.3083 7.0906 46 1 3.9994 0.9053 -0.7162 47 1 3.8532 0.9569 1.0570 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172700446.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:02 Heat of formation + Delta-G solvation = -79.793251 kcal Electronic energy + Delta-G solvation = -22287.288959 eV Core-core repulsion = 19081.994749 eV Total energy + Delta-G solvation = -3205.294210 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.40547 -38.71248 -35.51879 -34.67611 -33.35588 -32.84943 -31.21256 -30.13863 -28.96203 -26.50641 -24.18587 -23.18796 -22.63952 -21.07770 -21.02670 -20.50556 -19.22562 -18.04252 -16.48083 -16.04629 -15.78646 -15.40348 -15.14786 -14.63617 -14.44843 -14.35428 -14.06120 -13.85856 -13.58193 -13.37052 -12.95525 -12.41871 -12.31671 -12.24036 -12.03469 -11.77798 -11.69795 -11.66196 -11.38172 -11.15048 -10.87140 -10.77602 -10.69102 -10.60312 -10.39247 -10.19781 -10.01594 -9.82839 -9.41104 -9.11644 -9.08457 -8.53726 -8.35295 -5.99990 -4.03137 2.90786 3.32963 3.37669 3.39621 3.44995 4.29703 4.37073 4.42472 4.43561 4.48995 4.82161 4.82633 4.95735 5.06073 5.14486 5.16947 5.31020 5.35549 5.35891 5.36262 5.48457 5.58410 5.66591 5.71236 5.73754 5.76307 5.85182 5.87017 5.91803 5.97503 6.07998 6.12452 6.18015 6.22439 6.58394 6.61425 6.65843 6.86163 7.05866 7.15483 7.65716 7.79153 7.98997 8.23221 8.39962 8.84146 9.03403 9.60789 11.11284 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027380 B = 0.002588 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.407801 B =10817.633358 C =11374.711605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.089 4.089 4 H 0.068 0.932 5 C -0.114 4.114 6 C -0.118 4.118 7 C -0.132 4.132 8 C 0.166 3.834 9 H 0.087 0.913 10 N -0.744 5.744 11 C 0.700 3.300 12 O -0.594 6.594 13 N -0.743 5.743 14 C 0.136 3.864 15 C -0.120 4.120 16 C 0.024 3.976 17 C -0.523 4.523 18 H 0.054 0.946 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C -0.122 4.122 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.392 0.608 38 H 0.392 0.608 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.262 0.738 46 H 0.077 0.923 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.108 -21.928 -16.101 28.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.107 4.107 4 H 0.087 0.913 5 C -0.152 4.152 6 C -0.156 4.156 7 C -0.171 4.171 8 C 0.060 3.940 9 H 0.105 0.895 10 N -0.401 5.401 11 C 0.399 3.601 12 O -0.472 6.472 13 N -0.397 5.397 14 C 0.012 3.988 15 C -0.158 4.158 16 C -0.014 4.014 17 C -0.561 4.561 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.160 4.160 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.226 0.774 38 H 0.225 0.775 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.071 0.929 46 H 0.096 0.904 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.973 -21.414 -16.486 27.910 hybrid contribution -1.316 0.228 1.186 1.786 sum -8.289 -21.186 -15.300 27.416 Atomic orbital electron populations 1.21827 0.95896 1.01486 1.02001 1.21565 0.95923 0.96216 1.01988 1.21190 0.95233 0.95972 0.98315 0.91349 1.21647 1.00594 0.95795 0.97146 1.21487 0.95839 0.96437 1.01792 1.21946 0.96041 1.01908 0.97167 1.20715 0.98544 0.89873 0.84840 0.89524 1.45257 1.26517 1.31796 1.36488 1.16055 0.83728 0.79995 0.80291 1.90908 1.23038 1.69445 1.63856 1.45395 1.26629 1.33019 1.34704 1.21484 0.96024 0.85215 0.96042 1.21884 0.98955 0.99950 0.95011 1.19022 0.95714 0.91024 0.95591 1.21172 1.07000 1.12535 1.15391 0.92726 1.25030 0.95096 0.96842 0.97498 1.69954 1.20348 1.21932 1.41048 0.86644 0.80191 0.78485 0.82578 1.20261 1.21273 1.20259 1.21906 0.95605 0.95647 1.02836 0.92964 0.92723 0.92475 0.92001 0.91992 0.92004 0.91862 0.92200 0.91917 0.91214 0.91388 0.77377 0.77471 0.92047 0.92043 0.92818 0.92831 0.96259 0.96261 0.92874 0.90448 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.67 37.16 0.36 -0.49 16 2 C -0.12 -0.67 5.40 -26.73 -0.14 -0.81 16 3 C -0.09 -0.55 2.02 -90.62 -0.18 -0.74 16 4 H 0.07 0.45 6.50 -51.93 -0.34 0.11 16 5 C -0.11 -0.75 4.96 -26.74 -0.13 -0.88 16 6 C -0.12 -0.97 5.77 -26.73 -0.15 -1.12 16 7 C -0.13 -1.27 5.60 -26.73 -0.15 -1.42 16 8 C 0.17 1.64 2.78 -67.91 -0.19 1.45 16 9 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 10 N -0.74 -8.15 4.24 -58.66 -0.25 -8.39 16 11 C 0.70 10.83 8.53 -86.92 -0.74 10.09 16 12 O -0.59 -11.78 16.01 5.29 0.08 -11.69 16 13 N -0.74 -11.03 5.56 -65.23 -0.36 -11.40 16 14 C 0.14 2.47 5.67 -4.04 -0.02 2.45 16 15 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 16 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 17 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 18 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 21 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C -0.12 -0.86 4.89 -26.70 -0.13 -0.99 16 26 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.31 6.56 -51.93 -0.34 -0.03 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.57 7.60 -51.93 -0.39 0.18 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.39 3.35 6.88 -40.82 -0.28 3.07 16 38 H 0.39 4.67 8.49 -40.82 -0.35 4.32 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 366.55 15.07 5.52 5.52 Total: -1.00 -32.45 366.55 -10.21 -42.66 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -8.74 Total: 1.00 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -2.18 Total: -7.99 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.13 Total: -46.07 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.08 Total: -11.69 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.45 -10.21 -42.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172700446.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.132 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds