Wall clock time and date at job start Tue Mar 31 2020 05:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47015 * 2 1 4 4 H 1.09001 * 109.47362 * 304.99190 * 3 2 1 5 5 C 1.52997 * 109.47317 * 64.99921 * 3 2 1 6 6 C 1.53002 * 109.46817 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.46972 * 299.99733 * 6 5 3 8 8 C 1.52997 * 109.47131 * 60.00459 * 7 6 5 9 9 H 1.08993 * 109.47194 * 60.00154 * 8 7 6 10 10 N 1.46506 * 109.46949 * 180.02562 * 8 7 6 11 11 C 1.34783 * 119.99811 * 274.99482 * 10 8 7 12 12 O 1.21590 * 119.99899 * 0.02562 * 11 10 8 13 13 N 1.34774 * 119.99908 * 180.02562 * 11 10 8 14 14 C 1.46502 * 119.99872 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.46932 * 179.97438 * 14 13 11 16 16 C 1.53005 * 109.47033 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47287 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99845 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00100 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00235 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00025 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47480 * 90.00127 * 21 19 17 23 23 H 1.48505 * 109.47141 * 210.00322 * 21 19 17 24 24 H 1.48496 * 109.47118 * 330.00022 * 21 19 17 25 25 C 1.52999 * 109.46991 * 299.99311 * 8 7 6 26 26 H 1.09001 * 109.47405 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47145 * 300.00897 * 1 2 3 28 28 H 1.09000 * 109.46883 * 59.99966 * 1 2 3 29 29 H 1.08994 * 109.47229 * 239.99579 * 2 1 3 30 30 H 1.08998 * 109.46376 * 120.00020 * 2 1 3 31 31 H 1.09002 * 109.47153 * 299.99641 * 5 3 2 32 32 H 1.08996 * 109.46952 * 59.99813 * 5 3 2 33 33 H 1.08996 * 109.47407 * 60.00219 * 6 5 3 34 34 H 1.09000 * 109.46986 * 179.97438 * 6 5 3 35 35 H 1.09001 * 109.46993 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.47380 * 299.99696 * 7 6 5 37 37 H 0.97000 * 120.00279 * 94.99983 * 10 8 7 38 38 H 0.97000 * 120.00182 * 0.02562 * 13 11 10 39 39 H 1.09001 * 109.47298 * 300.00185 * 14 13 11 40 40 H 1.09005 * 109.46879 * 60.00233 * 14 13 11 41 41 H 1.09000 * 109.47240 * 299.99670 * 15 14 13 42 42 H 1.08999 * 109.47253 * 59.99968 * 15 14 13 43 43 H 1.09001 * 109.47289 * 300.00283 * 16 15 14 44 44 H 1.09005 * 109.46786 * 60.00268 * 16 15 14 45 45 H 0.96991 * 120.00524 * 179.97438 * 20 19 17 46 46 H 1.08993 * 109.47839 * 300.00447 * 25 8 7 47 47 H 1.09000 * 109.47160 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 2.1458 3.5689 1.3075 7 6 3.6706 3.5701 1.1821 8 6 4.0754 2.8860 -0.1252 9 1 3.6413 3.4253 -0.9670 10 7 5.5356 2.8866 -0.2449 11 6 6.1690 3.9588 -0.7606 12 8 5.5286 4.9256 -1.1259 13 7 7.5122 3.9592 -0.8712 14 6 8.2007 5.1248 -1.4312 15 6 9.7090 4.8686 -1.4439 16 6 10.4280 6.0857 -2.0293 17 6 11.9138 5.8337 -2.0413 18 1 12.3059 4.8988 -1.6690 19 6 12.7724 6.7963 -2.5284 20 7 12.2948 7.9345 -2.9822 21 14 14.6139 6.4836 -2.5439 22 1 14.9970 5.8460 -3.8291 23 1 15.3362 7.7728 -2.3963 24 1 14.9727 5.5836 -1.4186 25 6 3.5649 1.4437 -0.1254 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 0.5489 2.1253 1.3968 32 1 2.0698 1.5875 2.1491 33 1 1.7116 4.1082 0.4656 34 1 1.8571 4.0564 2.2386 35 1 4.0344 4.5976 1.1826 36 1 4.1049 3.0309 2.0240 37 1 6.0465 2.1154 0.0468 38 1 8.0230 3.1877 -0.5801 39 1 7.8526 5.2979 -2.4495 40 1 7.9866 6.0015 -0.8199 41 1 10.0568 4.6958 -0.4254 42 1 9.9235 3.9918 -2.0548 43 1 10.0802 6.2582 -3.0478 44 1 10.2136 6.9628 -1.4186 45 1 12.8988 8.6118 -3.3246 46 1 3.9991 0.9044 0.7164 47 1 3.8537 0.9562 -1.0565 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172700448.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:05 Heat of formation + Delta-G solvation = -83.288787 kcal Electronic energy + Delta-G solvation = -21875.991719 eV Core-core repulsion = 18670.545931 eV Total energy + Delta-G solvation = -3205.445788 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.20175 -38.78916 -35.61080 -34.76945 -33.42476 -33.04599 -31.20860 -30.09788 -28.74266 -26.48354 -24.20306 -23.19907 -22.50834 -21.18651 -20.64261 -20.38456 -19.94128 -17.94623 -16.61551 -16.13789 -15.50808 -15.32976 -15.18492 -14.54190 -14.48426 -14.29089 -14.21091 -13.76618 -13.74812 -13.61130 -13.04578 -12.62558 -12.26444 -12.05496 -11.78676 -11.73701 -11.66298 -11.53229 -11.40678 -11.09676 -10.89259 -10.82026 -10.69580 -10.58388 -10.55137 -10.39191 -9.99630 -9.83518 -9.41292 -9.10754 -9.10159 -8.55196 -8.35730 -6.00304 -4.03365 2.85958 3.31589 3.37893 3.40737 3.42984 4.28852 4.32792 4.40424 4.45926 4.61939 4.76969 4.83095 4.92490 5.06197 5.12819 5.18697 5.26742 5.33369 5.35313 5.38192 5.44095 5.58636 5.65459 5.71888 5.73139 5.81325 5.84327 5.85198 5.87107 5.98271 6.05037 6.11555 6.20534 6.22295 6.57506 6.58037 6.65418 6.85483 7.05332 7.14281 7.65694 7.78822 7.98757 8.21933 8.39732 8.82370 9.03359 9.60617 11.10975 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.049386 B = 0.002197 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.826839 B =12742.350977 C =12993.000658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.084 4.084 4 H 0.073 0.927 5 C -0.116 4.116 6 C -0.117 4.117 7 C -0.130 4.130 8 C 0.166 3.834 9 H 0.086 0.914 10 N -0.749 5.749 11 C 0.700 3.300 12 O -0.593 6.593 13 N -0.743 5.743 14 C 0.135 3.865 15 C -0.120 4.120 16 C 0.023 3.977 17 C -0.522 4.522 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.121 4.121 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.393 0.607 38 H 0.393 0.607 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.261 0.739 46 H 0.066 0.934 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.486 -16.854 9.027 29.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.103 4.103 4 H 0.092 0.908 5 C -0.153 4.153 6 C -0.155 4.155 7 C -0.169 4.169 8 C 0.060 3.940 9 H 0.104 0.896 10 N -0.404 5.404 11 C 0.400 3.600 12 O -0.471 6.471 13 N -0.397 5.397 14 C 0.012 3.988 15 C -0.158 4.158 16 C -0.014 4.014 17 C -0.560 4.560 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.159 4.159 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.226 0.774 38 H 0.226 0.774 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -23.003 -15.746 8.588 29.169 hybrid contribution 1.621 -0.798 0.239 1.823 sum -21.382 -16.544 8.826 28.440 Atomic orbital electron populations 1.21824 0.95866 1.01476 1.01996 1.21558 0.95937 0.96157 1.02001 1.21134 0.94463 0.96113 0.98593 0.90829 1.21671 1.00677 0.95758 0.97231 1.21495 0.95342 0.96618 1.02082 1.21953 0.95767 1.01737 0.97469 1.20745 0.78820 0.95948 0.98462 0.89563 1.45231 1.07406 1.18817 1.68924 1.16048 0.82223 0.83152 0.78623 1.90911 1.65718 1.34557 1.55949 1.45399 1.04769 1.21359 1.68179 1.21493 0.92789 0.86322 0.98192 1.21886 0.91078 1.01836 1.01017 1.19033 0.94477 0.91655 0.96251 1.21206 0.91704 1.01759 1.41349 0.92666 1.25035 0.98921 0.95169 0.95404 1.69965 1.34934 1.06431 1.41919 0.86578 0.85407 0.77549 0.78348 1.20682 1.21212 1.19924 1.21863 0.95794 0.95779 1.02457 0.92944 0.92452 0.92729 0.91972 0.92008 0.91695 0.91994 0.91722 0.91831 0.91240 0.92075 0.77417 0.77398 0.92020 0.92031 0.92801 0.92806 0.96242 0.96237 0.92939 0.91487 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.67 37.16 0.36 -0.46 16 2 C -0.12 -0.68 5.40 -26.73 -0.14 -0.82 16 3 C -0.08 -0.55 2.19 -90.62 -0.20 -0.75 16 4 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 5 C -0.12 -0.76 4.96 -26.73 -0.13 -0.89 16 6 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 7 C -0.13 -1.29 5.49 -26.73 -0.15 -1.43 16 8 C 0.17 1.68 2.45 -67.93 -0.17 1.52 16 9 H 0.09 1.09 7.58 -51.93 -0.39 0.69 16 10 N -0.75 -8.32 5.08 -58.67 -0.30 -8.62 16 11 C 0.70 10.94 8.53 -86.91 -0.74 10.20 16 12 O -0.59 -11.85 16.01 5.29 0.08 -11.77 16 13 N -0.74 -11.06 5.56 -65.22 -0.36 -11.42 16 14 C 0.14 2.47 5.67 -4.04 -0.02 2.45 16 15 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 16 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 17 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 21 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 C -0.12 -0.88 4.67 -26.73 -0.12 -1.01 16 26 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.29 6.56 -51.93 -0.34 -0.05 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.38 6.57 -51.93 -0.34 0.04 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.39 3.23 8.62 -40.82 -0.35 2.88 16 38 H 0.39 4.65 8.49 -40.82 -0.35 4.30 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -32.68 370.98 -10.36 -43.04 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -8.92 Total: 0.69 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -2.17 Total: -7.85 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.08 Total: -46.29 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.08 Total: -11.77 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.68 -10.36 -43.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172700448.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.247 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds