Wall clock time and date at job start Tue Mar 31 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 109.47313 * 2 1 4 4 H 1.09002 * 109.47352 * 305.00174 * 3 2 1 5 5 C 1.50697 * 109.47384 * 185.00181 * 3 2 1 6 6 H 1.08007 * 119.99982 * 240.00178 * 5 3 2 7 7 C 1.37875 * 120.00222 * 60.00188 * 5 3 2 8 8 N 1.31517 * 119.99983 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00066 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47480 * 59.99993 * 9 7 5 11 11 H 1.48512 * 109.46853 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47143 * 299.99628 * 9 7 5 13 13 N 1.46500 * 109.47077 * 65.00314 * 3 2 1 14 14 C 1.34782 * 119.99814 * 275.00014 * 13 3 2 15 15 O 1.21282 * 119.99997 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00130 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.47199 * 45.02698 * 16 14 13 18 18 C 1.52997 * 109.47291 * 285.02596 * 16 14 13 19 19 N 1.46901 * 109.47131 * 165.02288 * 16 14 13 20 20 C 1.48003 * 110.99708 * 199.70475 * 19 16 14 21 21 C 1.50445 * 112.82430 * 191.34534 * 20 19 16 22 22 C 1.54307 * 108.49941 * 93.73128 * 21 20 19 23 23 C 1.45882 * 112.18900 * 281.46434 * 22 21 20 24 24 C 1.54313 * 112.18247 * 61.11453 * 23 22 21 25 25 C 1.48001 * 110.99905 * 70.98959 * 19 16 14 26 26 H 1.09004 * 109.47305 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47050 * 59.99893 * 1 2 3 28 28 H 1.09004 * 109.47191 * 299.99694 * 1 2 3 29 29 H 1.08997 * 109.47448 * 120.00500 * 2 1 3 30 30 H 1.09007 * 109.46858 * 239.99921 * 2 1 3 31 31 H 0.96998 * 120.00170 * 179.97438 * 8 7 5 32 32 H 0.97001 * 120.00255 * 94.99898 * 13 3 2 33 33 H 1.09005 * 109.47039 * 300.80560 * 18 16 14 34 34 H 1.08997 * 109.47229 * 60.80246 * 18 16 14 35 35 H 1.09002 * 109.47454 * 180.80508 * 18 16 14 36 36 H 1.08991 * 108.81663 * 312.21120 * 20 19 16 37 37 H 1.09002 * 108.81272 * 70.49103 * 20 19 16 38 38 H 1.09005 * 109.63542 * 334.03037 * 21 20 19 39 39 H 1.09004 * 109.63354 * 213.43391 * 21 20 19 40 40 H 1.09007 * 108.93994 * 160.76519 * 22 21 20 41 41 H 1.09008 * 108.94118 * 42.16266 * 22 21 20 42 42 H 1.08997 * 108.93183 * 300.42588 * 23 22 21 43 43 H 1.08993 * 108.94105 * 181.81568 * 23 22 21 44 44 H 1.08999 * 109.62999 * 161.76105 * 24 23 22 45 45 H 1.09003 * 109.63082 * 41.17399 * 24 23 22 46 46 H 1.08999 * 108.80908 * 205.69718 * 25 19 16 47 47 H 1.08994 * 108.80982 * 323.97208 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8800 -1.3812 10 1 6.5967 0.1452 -0.2344 11 1 6.3978 0.2157 -2.6500 12 1 6.5004 2.2799 -1.3808 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3393 2.6326 0.4342 16 6 0.0363 3.3375 2.6549 17 1 0.8564 3.9634 3.0069 18 6 -0.2827 2.2749 3.7084 19 7 -1.1514 4.1707 2.4245 20 6 -1.2994 5.1890 3.4883 21 6 -2.6336 5.8831 3.4502 22 6 -3.5956 5.1477 4.4067 23 6 -4.1263 3.9222 3.8196 24 6 -3.0132 2.9079 3.4829 25 6 -2.3513 3.3336 2.2008 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 3.8292 -0.0612 -2.9499 32 1 2.2720 2.1230 1.9978 33 1 -1.0933 1.6401 3.3503 34 1 0.6028 1.6658 3.8898 35 1 -0.5850 2.7617 4.6356 36 1 -1.1829 4.7043 4.4575 37 1 -0.5123 5.9342 3.3734 38 1 -3.0326 5.8545 2.4362 39 1 -2.5174 6.9180 3.7720 40 1 -4.4254 5.8104 4.6526 41 1 -3.0609 4.8981 5.3233 42 1 -4.6651 4.1725 2.9057 43 1 -4.8210 3.4645 4.5238 44 1 -3.4472 1.9157 3.3592 45 1 -2.2775 2.8912 4.2870 46 1 -3.0684 3.8991 1.6059 47 1 -2.0598 2.4435 1.6433 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183940992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:30 Heat of formation + Delta-G solvation = -39.821385 kcal Electronic energy + Delta-G solvation = -24085.880336 eV Core-core repulsion = 20882.319436 eV Total energy + Delta-G solvation = -3203.560900 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.16546 -38.37344 -35.31272 -34.44577 -32.36147 -32.25734 -31.09361 -29.84942 -26.89734 -26.70415 -24.92272 -23.60187 -22.57514 -20.63393 -20.18070 -19.40937 -19.12402 -17.04459 -16.49226 -15.87123 -15.33899 -15.13123 -14.73808 -14.61964 -14.11935 -13.85221 -13.53506 -13.17377 -13.00226 -12.91724 -12.64035 -12.24303 -12.22719 -11.95443 -11.66618 -11.56792 -11.38984 -11.21440 -11.02745 -10.95709 -10.78430 -10.70253 -10.63983 -10.41549 -10.28636 -10.23598 -10.05607 -9.58594 -9.00899 -8.75122 -8.44840 -7.90544 -7.71347 -6.08542 -4.17692 3.27475 3.32822 3.33777 3.49710 3.79850 4.29973 4.47907 4.58880 4.67319 4.90505 5.10938 5.14527 5.19567 5.22840 5.26419 5.38552 5.44752 5.47031 5.60311 5.69203 5.81321 5.83486 5.92485 5.94937 5.96984 6.05531 6.08497 6.12000 6.24492 6.28266 6.41729 6.47622 6.53627 6.69608 7.07002 7.18967 7.27442 7.37999 7.42019 7.54991 7.66904 7.80459 7.96553 8.23139 8.76899 8.84844 9.26940 9.50467 10.96669 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033870 B = 0.003986 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.494400 B = 7022.513729 C = 7385.049759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.711 5.711 14 C 0.510 3.490 15 O -0.533 6.533 16 C 0.064 3.936 17 H 0.094 0.906 18 C -0.178 4.178 19 N -0.526 5.526 20 C 0.063 3.937 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.161 4.161 25 C 0.061 3.939 26 H 0.020 0.980 27 H 0.049 0.951 28 H 0.038 0.962 29 H 0.029 0.971 30 H 0.098 0.902 31 H 0.264 0.736 32 H 0.385 0.615 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.032 0.968 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.581 6.337 14.061 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.165 4.165 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.359 5.359 14 C 0.294 3.706 15 O -0.410 6.410 16 C -0.048 4.048 17 H 0.112 0.888 18 C -0.237 4.237 19 N -0.250 5.250 20 C -0.064 4.064 21 C -0.158 4.158 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.200 4.200 25 C -0.066 4.066 26 H 0.039 0.961 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.217 0.783 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.086 0.914 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.056 6.467 12.749 18.072 hybrid contribution 1.224 -0.470 1.065 1.689 sum -9.832 5.998 13.814 17.985 Atomic orbital electron populations 1.21835 0.98432 0.97842 1.01196 1.21923 0.92546 0.99968 1.02113 1.18723 0.93996 0.89031 0.81172 0.93365 1.21213 0.90868 1.38907 1.06208 0.92238 1.24878 0.98483 0.94874 0.95421 1.69885 1.35146 1.37636 1.09331 0.86538 0.85040 0.78284 0.77395 1.20229 1.21171 1.20206 1.46469 1.14702 1.56427 1.18342 1.20093 0.82736 0.79087 0.88688 1.90626 1.51217 1.59017 1.40134 1.21615 0.94501 0.94540 0.94149 0.88833 1.22580 1.03133 0.99488 0.98525 1.61595 1.02815 1.15920 1.44652 1.21779 0.97905 0.94134 0.92583 1.21416 0.94995 0.98560 1.00842 1.20590 0.99219 0.97033 0.98713 1.20574 0.98122 0.95919 1.01007 1.22368 0.98615 0.98784 1.00183 1.21912 0.91012 0.98051 0.95607 0.96062 0.93149 0.94324 0.95210 0.88414 0.92571 0.78292 0.91258 0.91671 0.92065 0.94993 0.91356 0.90472 0.91324 0.92445 0.92544 0.92088 0.92773 0.91672 0.90785 0.91354 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.51 37.16 0.32 -2.69 16 2 C -0.13 -3.07 5.45 -26.74 -0.15 -3.21 16 3 C 0.27 6.83 2.24 -69.09 -0.15 6.68 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -14.09 8.73 -34.44 -0.30 -14.39 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.80 11.29 55.43 0.63 -24.17 16 9 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 N -0.71 -14.55 5.02 -54.94 -0.28 -14.83 16 14 C 0.51 9.92 5.40 -10.99 -0.06 9.86 16 15 O -0.53 -12.17 11.55 5.56 0.06 -12.11 16 16 C 0.06 0.95 2.66 -68.87 -0.18 0.77 16 17 H 0.09 1.26 7.94 -51.93 -0.41 0.85 16 18 C -0.18 -2.21 7.48 37.16 0.28 -1.93 16 19 N -0.53 -7.56 4.42 -229.31 -1.01 -8.57 16 20 C 0.06 0.71 4.82 -4.49 -0.02 0.69 16 21 C -0.12 -1.19 5.63 -27.32 -0.15 -1.34 16 22 C -0.12 -1.05 5.30 -29.42 -0.16 -1.20 16 23 C -0.12 -1.14 5.30 -29.41 -0.16 -1.29 16 24 C -0.16 -1.79 4.23 -27.32 -0.12 -1.90 16 25 C 0.06 0.86 4.12 -4.49 -0.02 0.84 16 26 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 28 H 0.04 0.82 5.65 -51.93 -0.29 0.52 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 2.63 5.95 -51.92 -0.31 2.32 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.39 6.91 8.54 -40.82 -0.35 6.56 16 33 H 0.07 0.92 5.72 -51.93 -0.30 0.62 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.65 5.75 -51.93 -0.30 0.35 16 36 H 0.03 0.34 5.36 -51.93 -0.28 0.06 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.87 7.08 -51.93 -0.37 0.50 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 41 H 0.06 0.49 7.52 -51.92 -0.39 0.10 16 42 H 0.06 0.60 7.52 -51.93 -0.39 0.21 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 0.81 4.07 -51.93 -0.21 0.60 16 46 H 0.07 0.98 6.59 -51.93 -0.34 0.64 16 47 H 0.09 1.52 5.49 -51.93 -0.28 1.23 16 LS Contribution 338.07 15.07 5.09 5.09 Total: -1.00 -29.15 338.07 -9.44 -38.58 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -7.95 Total: 7.79 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -0.96 Total: -7.43 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -0.66 Total: -47.58 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.06 Total: -12.11 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.15 -9.44 -38.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183940992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.238 kcal (2) G-P(sol) polarization free energy of solvation -29.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds