Wall clock time and date at job start Tue Mar 31 2020 05:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09004 * 109.90546 * 54.64757 * 3 2 1 5 5 C 1.53994 * 109.92285 * 175.95696 * 3 2 1 6 6 H 1.08998 * 110.30741 * 239.49848 * 5 3 2 7 7 C 1.52999 * 110.30625 * 1.66379 * 5 3 2 8 8 C 1.54589 * 105.13966 * 120.57858 * 5 3 2 9 9 C 1.54935 * 102.92392 * 21.95997 * 8 5 3 10 10 N 1.47904 * 109.91823 * 293.55246 * 3 2 1 11 11 C 1.46898 * 111.00107 * 94.79928 * 10 3 2 12 12 C 1.50699 * 109.46861 * 189.99959 * 11 10 3 13 13 O 1.21287 * 119.99953 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00145 * 179.97438 * 12 11 10 15 15 C 1.46504 * 119.99888 * 0.02562 * 14 12 11 16 16 C 1.53005 * 109.47039 * 89.99484 * 15 14 12 17 17 C 1.46498 * 119.99995 * 179.97438 * 14 12 11 18 18 C 1.50697 * 109.46978 * 90.00395 * 17 14 12 19 19 H 1.07996 * 119.99978 * 359.97438 * 18 17 14 20 20 C 1.37881 * 119.99918 * 179.97438 * 18 17 14 21 21 N 1.31521 * 119.99768 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 119.99962 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47244 * 89.99832 * 22 20 18 24 24 H 1.48501 * 109.47230 * 209.99839 * 22 20 18 25 25 H 1.48502 * 109.47571 * 329.99564 * 22 20 18 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 1.09003 * 109.47473 * 59.99822 * 7 5 3 32 32 H 1.08991 * 109.47276 * 180.02562 * 7 5 3 33 33 H 1.09006 * 109.47258 * 300.00456 * 7 5 3 34 34 H 1.09002 * 110.72774 * 263.60086 * 8 5 3 35 35 H 1.09005 * 110.72060 * 140.31877 * 8 5 3 36 36 H 1.08998 * 110.66736 * 204.14933 * 9 8 5 37 37 H 1.09000 * 110.80683 * 81.08849 * 9 8 5 38 38 H 1.08997 * 109.47043 * 309.99664 * 11 10 3 39 39 H 1.08995 * 109.46945 * 70.00246 * 11 10 3 40 40 H 1.08990 * 109.47170 * 209.99653 * 15 14 12 41 41 H 1.09001 * 109.46877 * 330.00160 * 15 14 12 42 42 H 1.08999 * 109.46629 * 179.97438 * 16 15 14 43 43 H 1.09001 * 109.46834 * 300.00307 * 16 15 14 44 44 H 1.09001 * 109.46734 * 60.00589 * 16 15 14 45 45 H 1.09000 * 109.46744 * 210.00153 * 17 14 12 46 46 H 1.08999 * 109.47639 * 329.99906 * 17 14 12 47 47 H 0.97004 * 119.99683 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6046 1.9901 0.8359 5 6 3.5765 1.4558 0.1021 6 1 3.8918 1.9984 0.9933 7 6 4.1192 0.0255 0.1302 8 6 4.0594 2.1879 -1.1709 9 6 2.8158 3.0118 -1.5896 10 7 1.6841 2.1028 -1.2747 11 6 0.4270 2.8519 -1.1466 12 6 -0.0302 3.3028 -2.5099 13 8 0.6263 3.0267 -3.4917 14 7 -1.1692 4.0119 -2.6383 15 6 -1.9624 4.3448 -1.4525 16 6 -1.4931 5.6860 -0.8850 17 6 -1.6133 4.4506 -3.9636 18 6 -2.4997 3.3943 -4.5715 19 1 -2.7107 2.4868 -4.0254 20 6 -3.0413 3.5865 -5.8248 21 7 -3.8145 2.6644 -6.3555 22 14 -2.6758 5.1560 -6.7695 23 1 -1.4583 4.9632 -7.5975 24 1 -3.8262 5.4833 -7.6497 25 1 -2.4524 6.2693 -5.8125 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8278 -0.4918 -0.7840 32 1 5.2064 0.0508 0.2029 33 1 3.7098 -0.5016 0.9920 34 1 4.3282 1.4730 -1.9486 35 1 4.8986 2.8451 -0.9429 36 1 2.8440 3.2359 -2.6559 37 1 2.7455 3.9300 -1.0065 38 1 -0.3341 2.2110 -0.7016 39 1 0.5862 3.7225 -0.5104 40 1 -3.0148 4.4149 -1.7272 41 1 -1.8344 3.5670 -0.6996 42 1 -2.0836 5.9338 -0.0030 43 1 -0.4406 5.6158 -0.6102 44 1 -1.6211 6.4638 -1.6378 45 1 -2.1707 5.3827 -3.8698 46 1 -0.7455 4.6092 -4.6037 47 1 -4.1952 2.7995 -7.2374 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185586706.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:08 Heat of formation + Delta-G solvation = -31.268073 kcal Electronic energy + Delta-G solvation = -23852.145486 eV Core-core repulsion = 20648.955485 eV Total energy + Delta-G solvation = -3203.190001 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.00840 -38.55479 -35.31558 -33.56911 -33.18681 -32.60210 -30.32576 -29.15594 -28.05285 -26.72228 -24.80002 -23.13495 -22.93138 -21.84879 -20.97711 -19.14023 -18.25656 -16.87315 -16.41858 -16.36003 -15.43257 -15.09167 -14.88105 -14.51688 -14.06782 -13.78854 -13.47726 -13.38061 -13.29196 -12.99147 -12.66607 -12.54392 -12.38627 -12.11070 -11.92775 -11.71366 -11.58738 -11.40545 -11.35198 -11.13892 -10.92740 -10.75551 -10.74595 -10.57327 -10.46385 -10.38066 -10.32434 -10.10506 -9.48710 -8.88904 -8.54669 -8.18849 -7.64112 -6.04439 -4.02506 3.31532 3.37359 3.39391 3.44241 3.66913 4.21862 4.43152 4.52783 4.62924 4.78892 5.06910 5.14347 5.21088 5.26340 5.28047 5.29870 5.34711 5.41747 5.43979 5.54893 5.56983 5.60588 5.67267 5.68856 5.73696 5.82246 5.90743 5.97768 6.00895 6.07928 6.12818 6.15632 6.19907 6.27409 6.39068 6.39737 6.46427 6.73616 6.97562 7.05727 7.14594 7.43724 7.66352 8.34112 8.52481 8.99170 9.11135 9.56334 11.09126 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021200 B = 0.004465 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.434144 B = 6270.091528 C = 6340.594369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.108 4.108 3 C 0.068 3.932 4 H 0.048 0.952 5 C -0.098 4.098 6 H 0.070 0.930 7 C -0.143 4.143 8 C -0.118 4.118 9 C 0.037 3.963 10 N -0.488 5.488 11 C 0.022 3.978 12 C 0.510 3.490 13 O -0.522 6.522 14 N -0.597 5.597 15 C 0.107 3.893 16 C -0.169 4.169 17 C 0.218 3.782 18 C -0.526 4.526 19 H 0.074 0.926 20 C 0.072 3.928 21 N -0.898 5.898 22 Si 0.876 3.124 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.267 1.267 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.036 0.964 38 H 0.105 0.895 39 H 0.055 0.945 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.059 0.941 45 H 0.028 0.972 46 H 0.035 0.965 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.877 0.441 17.498 21.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.145 4.145 3 C -0.040 4.040 4 H 0.066 0.934 5 C -0.117 4.117 6 H 0.089 0.911 7 C -0.200 4.200 8 C -0.156 4.156 9 C -0.090 4.090 10 N -0.212 5.212 11 C -0.109 4.109 12 C 0.296 3.704 13 O -0.397 6.397 14 N -0.330 5.330 15 C -0.017 4.017 16 C -0.228 4.228 17 C 0.098 3.902 18 C -0.564 4.564 19 H 0.092 0.908 20 C -0.130 4.130 21 N -0.537 5.537 22 Si 0.703 3.297 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.192 1.192 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.054 0.946 38 H 0.122 0.878 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.045 0.955 46 H 0.053 0.947 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.018 -0.126 16.371 20.309 hybrid contribution -0.065 1.450 0.129 1.457 sum 11.953 1.323 16.500 20.418 Atomic orbital electron populations 1.21946 0.96230 1.01700 1.01869 1.21634 0.95694 0.95288 1.01925 1.22482 0.94514 0.96104 0.90950 0.93368 1.21983 0.94338 0.97122 0.98277 0.91110 1.21930 1.00021 0.95681 1.02366 1.22576 0.97021 0.98894 0.97117 1.23279 0.89664 0.93406 1.02686 1.64404 1.01021 1.27134 1.28656 1.22451 0.94351 0.97895 0.96220 1.20147 0.81270 0.78660 0.90347 1.90652 1.54956 1.54401 1.39677 1.47940 1.22615 1.53958 1.08478 1.21411 0.97153 0.95613 0.87555 1.22236 1.00917 0.98700 1.00907 1.19600 0.95469 0.95422 0.79731 1.21345 1.28285 1.04559 1.02224 0.90772 1.24856 0.94658 0.96470 0.97042 1.69907 1.32999 1.33923 1.16879 0.86857 0.78246 0.84089 0.80513 1.19947 1.21134 1.19150 0.93497 0.92881 0.91375 0.91847 0.90759 0.91715 0.93145 0.92432 0.90478 0.91467 0.88691 0.94558 0.87756 0.92721 0.89730 0.91675 0.92033 0.93223 0.92204 0.95452 0.94740 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 8.80 37.16 0.33 -1.59 16 2 C -0.11 -1.21 4.44 -26.73 -0.12 -1.33 16 3 C 0.07 0.80 2.61 -66.64 -0.17 0.62 16 4 H 0.05 0.53 7.77 -51.93 -0.40 0.13 16 5 C -0.10 -0.99 3.59 -89.27 -0.32 -1.31 16 6 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 7 C -0.14 -1.26 7.92 37.16 0.29 -0.97 16 8 C -0.12 -1.33 6.61 -24.87 -0.16 -1.49 16 9 C 0.04 0.53 5.94 -1.90 -0.01 0.51 16 10 N -0.49 -7.35 4.38 -224.01 -0.98 -8.33 16 11 C 0.02 0.34 3.28 -4.98 -0.02 0.33 16 12 C 0.51 10.58 7.50 -10.98 -0.08 10.50 16 13 O -0.52 -13.06 14.65 5.55 0.08 -12.98 16 14 N -0.60 -12.39 2.46 -175.06 -0.43 -12.82 16 15 C 0.11 1.68 5.93 -4.04 -0.02 1.66 16 16 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 17 C 0.22 5.41 4.23 -5.20 -0.02 5.39 16 18 C -0.53 -15.32 9.94 -34.44 -0.34 -15.66 16 19 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 20 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 21 N -0.90 -28.08 13.96 55.43 0.77 -27.30 16 22 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 23 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 25 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.01 5.91 -51.93 -0.31 0.70 16 29 H 0.06 0.59 6.54 -51.93 -0.34 0.25 16 30 H 0.07 0.94 6.97 -51.93 -0.36 0.58 16 31 H 0.06 0.64 6.87 -51.93 -0.36 0.28 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.45 6.62 -51.93 -0.34 0.11 16 34 H 0.08 0.92 7.84 -51.93 -0.41 0.51 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 1.61 7.10 -51.93 -0.37 1.24 16 37 H 0.04 0.48 7.81 -51.93 -0.41 0.07 16 38 H 0.10 1.51 4.48 -51.93 -0.23 1.28 16 39 H 0.05 0.74 6.88 -51.93 -0.36 0.38 16 40 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 41 H 0.06 0.87 6.44 -51.93 -0.33 0.54 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.61 7.22 -51.93 -0.38 0.23 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 46 H 0.03 0.92 6.85 -51.93 -0.36 0.56 16 47 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 354.01 15.07 5.33 5.33 Total: -1.00 -33.73 354.01 -8.55 -42.28 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -8.29 Total: -0.31 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -0.37 Total: -3.09 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -0.64 Total: -48.45 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.08 Total: -12.98 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.73 -8.55 -42.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185586706.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.011 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds