Wall clock time and date at job start Tue Mar 31 2020 05:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09004 * 109.90546 * 54.64757 * 3 2 1 5 5 C 1.53994 * 109.92285 * 175.95696 * 3 2 1 6 6 H 1.08998 * 110.30741 * 239.49848 * 5 3 2 7 7 C 1.52999 * 110.30625 * 1.66379 * 5 3 2 8 8 C 1.54589 * 105.13966 * 120.57858 * 5 3 2 9 9 C 1.54935 * 102.92392 * 21.95997 * 8 5 3 10 10 N 1.47904 * 109.91823 * 293.55246 * 3 2 1 11 11 C 1.46898 * 111.00107 * 94.79928 * 10 3 2 12 12 C 1.50699 * 109.46861 * 189.99959 * 11 10 3 13 13 O 1.21287 * 119.99953 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00145 * 179.97438 * 12 11 10 15 15 C 1.46504 * 119.99888 * 0.02562 * 14 12 11 16 16 C 1.53005 * 109.47039 * 89.99484 * 15 14 12 17 17 C 1.46498 * 119.99995 * 179.97438 * 14 12 11 18 18 C 1.50697 * 109.46978 * 90.00395 * 17 14 12 19 19 H 1.07996 * 119.99978 * 359.97438 * 18 17 14 20 20 C 1.37881 * 119.99918 * 179.97438 * 18 17 14 21 21 N 1.31521 * 119.99768 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 119.99962 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47244 * 89.99832 * 22 20 18 24 24 H 1.48501 * 109.47230 * 209.99839 * 22 20 18 25 25 H 1.48502 * 109.47571 * 329.99564 * 22 20 18 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 1.09003 * 109.47473 * 59.99822 * 7 5 3 32 32 H 1.08991 * 109.47276 * 180.02562 * 7 5 3 33 33 H 1.09006 * 109.47258 * 300.00456 * 7 5 3 34 34 H 1.09002 * 110.72774 * 263.60086 * 8 5 3 35 35 H 1.09005 * 110.72060 * 140.31877 * 8 5 3 36 36 H 1.08998 * 110.66736 * 204.14933 * 9 8 5 37 37 H 1.09000 * 110.80683 * 81.08849 * 9 8 5 38 38 H 1.08997 * 109.47043 * 309.99664 * 11 10 3 39 39 H 1.08995 * 109.46945 * 70.00246 * 11 10 3 40 40 H 1.08990 * 109.47170 * 209.99653 * 15 14 12 41 41 H 1.09001 * 109.46877 * 330.00160 * 15 14 12 42 42 H 1.08999 * 109.46629 * 179.97438 * 16 15 14 43 43 H 1.09001 * 109.46834 * 300.00307 * 16 15 14 44 44 H 1.09001 * 109.46734 * 60.00589 * 16 15 14 45 45 H 1.09000 * 109.46744 * 210.00153 * 17 14 12 46 46 H 1.08999 * 109.47639 * 329.99906 * 17 14 12 47 47 H 0.97004 * 119.99683 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6046 1.9901 0.8359 5 6 3.5765 1.4558 0.1021 6 1 3.8918 1.9984 0.9933 7 6 4.1192 0.0255 0.1302 8 6 4.0594 2.1879 -1.1709 9 6 2.8158 3.0118 -1.5896 10 7 1.6841 2.1028 -1.2747 11 6 0.4270 2.8519 -1.1466 12 6 -0.0302 3.3028 -2.5099 13 8 0.6263 3.0267 -3.4917 14 7 -1.1692 4.0119 -2.6383 15 6 -1.9624 4.3448 -1.4525 16 6 -1.4931 5.6860 -0.8850 17 6 -1.6133 4.4506 -3.9636 18 6 -2.4997 3.3943 -4.5715 19 1 -2.7107 2.4868 -4.0254 20 6 -3.0413 3.5865 -5.8248 21 7 -3.8145 2.6644 -6.3555 22 14 -2.6758 5.1560 -6.7695 23 1 -1.4583 4.9632 -7.5975 24 1 -3.8262 5.4833 -7.6497 25 1 -2.4524 6.2693 -5.8125 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8278 -0.4918 -0.7840 32 1 5.2064 0.0508 0.2029 33 1 3.7098 -0.5016 0.9920 34 1 4.3282 1.4730 -1.9486 35 1 4.8986 2.8451 -0.9429 36 1 2.8440 3.2359 -2.6559 37 1 2.7455 3.9300 -1.0065 38 1 -0.3341 2.2110 -0.7016 39 1 0.5862 3.7225 -0.5104 40 1 -3.0148 4.4149 -1.7272 41 1 -1.8344 3.5670 -0.6996 42 1 -2.0836 5.9338 -0.0030 43 1 -0.4406 5.6158 -0.6102 44 1 -1.6211 6.4638 -1.6378 45 1 -2.1707 5.3827 -3.8698 46 1 -0.7455 4.6092 -4.6037 47 1 -4.1952 2.7995 -7.2374 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185586706.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:07 Heat of formation + Delta-G solvation = -54.055216 kcal Electronic energy + Delta-G solvation = -23853.133610 eV Core-core repulsion = 20648.955485 eV Total energy + Delta-G solvation = -3204.178125 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.23745 -39.92060 -36.95047 -34.96701 -34.48091 -34.08981 -31.90205 -30.36676 -29.43556 -28.04068 -25.86712 -24.48386 -24.26768 -23.34020 -21.99416 -20.13445 -19.73943 -19.09805 -17.83707 -17.58467 -16.77715 -16.62626 -16.06170 -15.89604 -15.57366 -14.80319 -14.71134 -14.66692 -14.47013 -14.37452 -14.07423 -13.85756 -13.58324 -13.54438 -13.30629 -13.12146 -12.72900 -12.57441 -12.50199 -12.41024 -12.38711 -12.07224 -12.01175 -11.88438 -11.75730 -11.67375 -11.54374 -11.24113 -11.21637 -10.83833 -10.50657 -9.42267 -9.24550 -8.34588 -6.39239 1.30344 1.35046 1.43217 1.84616 2.23036 2.29954 2.99524 3.06905 3.61055 3.64288 3.85601 3.97495 4.07168 4.20356 4.21848 4.29072 4.38582 4.40576 4.42771 4.48985 4.60851 4.65548 4.71857 4.78040 4.80832 4.89024 4.90168 4.94660 4.97762 4.99006 5.07075 5.14129 5.18905 5.19471 5.35358 5.35742 5.36336 5.46416 5.47075 5.57552 5.66913 5.98465 6.13168 6.25902 6.61931 6.76033 7.21888 7.50216 8.82670 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021200 B = 0.004465 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.434144 B = 6270.091528 C = 6340.594369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.105 4.105 3 C 0.067 3.933 4 H 0.066 0.934 5 C -0.092 4.092 6 H 0.094 0.906 7 C -0.140 4.140 8 C -0.113 4.113 9 C 0.036 3.964 10 N -0.518 5.518 11 C 0.038 3.962 12 C 0.499 3.501 13 O -0.577 6.577 14 N -0.604 5.604 15 C 0.098 3.902 16 C -0.159 4.159 17 C 0.229 3.771 18 C -0.534 4.534 19 H 0.026 0.974 20 C 0.011 3.989 21 N -0.946 5.946 22 Si 0.948 3.052 23 H -0.278 1.278 24 H -0.273 1.273 25 H -0.239 1.239 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.032 0.968 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.058 0.942 44 H 0.046 0.954 45 H 0.047 0.953 46 H 0.014 0.986 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.995 2.106 20.579 24.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.143 4.143 3 C -0.041 4.041 4 H 0.084 0.916 5 C -0.111 4.111 6 H 0.113 0.887 7 C -0.197 4.197 8 C -0.151 4.151 9 C -0.092 4.092 10 N -0.243 5.243 11 C -0.093 4.093 12 C 0.287 3.713 13 O -0.456 6.456 14 N -0.337 5.337 15 C -0.024 4.024 16 C -0.217 4.217 17 C 0.106 3.894 18 C -0.573 4.573 19 H 0.045 0.955 20 C -0.187 4.187 21 N -0.586 5.586 22 Si 0.771 3.229 23 H -0.204 1.204 24 H -0.198 1.198 25 H -0.162 1.162 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.133 0.867 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.109 0.891 42 H 0.114 0.886 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.032 0.968 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.122 1.548 19.518 23.569 hybrid contribution -0.451 0.805 -0.810 1.228 sum 12.671 2.353 18.708 22.717 Atomic orbital electron populations 1.21926 0.96927 1.01713 1.01046 1.21646 0.95014 0.95374 1.02222 1.22602 0.95941 0.95825 0.89706 0.91562 1.22008 0.92919 0.97886 0.98239 0.88727 1.21903 1.00862 0.94877 1.02095 1.22550 0.96407 0.98670 0.97457 1.23200 0.90967 0.94481 1.00504 1.64312 1.00982 1.27701 1.31293 1.22323 0.95036 0.99179 0.92717 1.21197 0.80580 0.77472 0.92041 1.90619 1.56657 1.56348 1.42019 1.48077 1.23234 1.53864 1.08489 1.21749 0.95912 0.98484 0.86254 1.22147 1.01996 0.95920 1.01604 1.19232 0.93760 0.94682 0.81713 1.21567 1.29106 1.04096 1.02509 0.95540 1.25854 0.94212 1.00536 0.98096 1.70060 1.34405 1.36524 1.17626 0.85711 0.78006 0.79957 0.79234 1.20351 1.19804 1.16173 0.91432 0.92601 0.94851 0.89032 0.92900 0.93521 0.91951 0.90954 0.92034 0.89273 0.92785 0.93173 0.86655 0.89714 0.90931 0.89061 0.88608 0.92315 0.93436 0.93499 0.96769 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 8.80 71.98 0.63 -2.98 16 2 C -0.10 -2.17 4.44 30.59 0.14 -2.04 16 3 C 0.07 1.40 2.61 45.06 0.12 1.52 16 4 H 0.07 1.18 7.77 -2.38 -0.02 1.16 16 5 C -0.09 -1.57 3.59 -9.92 -0.04 -1.60 16 6 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 7 C -0.14 -2.12 7.92 71.98 0.57 -1.55 16 8 C -0.11 -2.38 6.61 31.80 0.21 -2.17 16 9 C 0.04 1.01 5.94 86.65 0.51 1.52 16 10 N -0.52 -15.34 4.38 -862.62 -3.78 -19.11 16 11 C 0.04 1.15 3.28 85.56 0.28 1.43 16 12 C 0.50 21.16 7.50 87.66 0.66 21.82 16 13 O -0.58 -30.48 14.65 -3.05 -0.04 -30.53 16 14 N -0.60 -25.32 2.46 -826.14 -2.03 -27.35 16 15 C 0.10 2.95 5.93 86.38 0.51 3.46 16 16 C -0.16 -3.55 10.24 71.98 0.74 -2.81 16 17 C 0.23 11.53 4.23 85.63 0.36 11.89 16 18 C -0.53 -32.47 9.94 25.60 0.25 -32.21 16 19 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 20 C 0.01 0.66 5.47 84.65 0.46 1.12 16 21 N -0.95 -61.25 13.96 21.45 0.30 -60.95 16 22 Si 0.95 45.71 27.47 68.60 1.88 47.59 16 23 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.03 0.98 5.91 -2.38 -0.01 0.97 16 29 H 0.09 1.39 6.54 -2.39 -0.02 1.38 16 30 H 0.05 1.33 6.97 -2.39 -0.02 1.31 16 31 H 0.05 0.88 6.87 -2.39 -0.02 0.86 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.88 6.62 -2.38 -0.02 0.86 16 34 H 0.06 1.47 7.84 -2.39 -0.02 1.45 16 35 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.05 1.94 7.10 -2.39 -0.02 1.92 16 37 H 0.05 1.23 7.81 -2.39 -0.02 1.21 16 38 H 0.12 3.19 4.48 -2.39 -0.01 3.18 16 39 H 0.09 2.02 6.88 -2.39 -0.02 2.00 16 40 H 0.07 2.34 8.07 -2.39 -0.02 2.33 16 41 H 0.09 2.24 6.44 -2.39 -0.02 2.22 16 42 H 0.10 1.52 8.14 -2.39 -0.02 1.51 16 43 H 0.06 1.22 7.22 -2.39 -0.02 1.20 16 44 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.05 2.17 7.13 -2.39 -0.02 2.16 16 46 H 0.01 0.78 6.85 -2.39 -0.02 0.76 16 47 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 Total: -1.00 -79.25 354.01 2.62 -76.63 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.87 Total: 16.31 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 5.41 Total: -2.60 kcal Atomic # 7 Polarization: -101.90 SS G_CDS: -5.50 Total: -107.41 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.04 Total: -30.53 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.88 Total: 47.59 kcal Total: -79.25 2.62 -76.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185586706.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.573 kcal (2) G-P(sol) polarization free energy of solvation -79.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds