Wall clock time and date at job start Tue Mar 31 2020 05:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47221 * 2 1 4 4 H 1.09003 * 110.06869 * 304.11580 * 3 2 1 5 5 C 1.53994 * 109.91730 * 182.91013 * 3 2 1 6 6 H 1.08994 * 110.39317 * 120.46369 * 5 3 2 7 7 C 1.52997 * 110.30996 * 358.33866 * 5 3 2 8 8 C 1.54592 * 105.14164 * 239.42218 * 5 3 2 9 9 C 1.54941 * 102.92185 * 338.04333 * 8 5 3 10 10 N 1.47899 * 109.91654 * 65.32137 * 3 2 1 11 11 C 1.46902 * 111.00187 * 265.19279 * 10 3 2 12 12 C 1.52998 * 109.47234 * 177.51574 * 11 10 3 13 13 C 1.50697 * 109.47066 * 182.96680 * 12 11 10 14 14 O 1.21282 * 120.00305 * 0.02562 * 13 12 11 15 15 N 1.34778 * 120.00100 * 179.97438 * 13 12 11 16 16 C 1.46500 * 119.99765 * 0.02562 * 15 13 12 17 17 C 1.46502 * 120.00020 * 179.72030 * 15 13 12 18 18 C 1.50699 * 109.47756 * 270.28228 * 17 15 13 19 19 H 1.08001 * 119.99290 * 359.97438 * 18 17 15 20 20 C 1.37870 * 120.00443 * 180.02562 * 18 17 15 21 21 N 1.31505 * 120.00265 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99778 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46782 * 90.00033 * 22 20 18 24 24 H 1.48496 * 109.47104 * 209.99962 * 22 20 18 25 25 H 1.48499 * 109.47129 * 330.00277 * 22 20 18 26 26 H 1.08998 * 109.46906 * 52.37877 * 1 2 3 27 27 H 1.09001 * 109.47032 * 172.37916 * 1 2 3 28 28 H 1.09002 * 109.46783 * 292.37971 * 1 2 3 29 29 H 1.09001 * 109.46501 * 240.00124 * 2 1 3 30 30 H 1.09001 * 109.46802 * 120.00540 * 2 1 3 31 31 H 1.09007 * 109.47264 * 302.83213 * 7 5 3 32 32 H 1.09000 * 109.47052 * 62.82709 * 7 5 3 33 33 H 1.08994 * 109.47420 * 182.82951 * 7 5 3 34 34 H 1.08998 * 110.72912 * 219.68529 * 8 5 3 35 35 H 1.09005 * 110.87430 * 96.47142 * 8 5 3 36 36 H 1.08989 * 110.66427 * 278.97780 * 9 8 5 37 37 H 1.09003 * 110.66719 * 155.84830 * 9 8 5 38 38 H 1.09009 * 109.46586 * 57.51548 * 11 10 3 39 39 H 1.08998 * 109.47507 * 297.51968 * 11 10 3 40 40 H 1.08995 * 109.47537 * 62.96648 * 12 11 10 41 41 H 1.09005 * 109.46790 * 302.96222 * 12 11 10 42 42 H 1.09000 * 109.46735 * 269.71894 * 16 15 13 43 43 H 1.08994 * 109.47328 * 29.71803 * 16 15 13 44 44 H 1.09002 * 109.47006 * 149.72126 * 16 15 13 45 45 H 1.09003 * 109.47116 * 30.28427 * 17 15 13 46 46 H 1.09001 * 109.47103 * 150.27642 * 17 15 13 47 47 H 0.97003 * 120.00291 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6234 1.9865 -0.8476 5 6 3.5782 1.4550 -0.0735 6 1 3.9116 1.9909 -0.9621 7 6 4.1212 0.0247 -0.0821 8 6 4.0374 2.1956 1.2034 9 6 2.7863 3.0222 1.5935 10 7 1.6606 2.1110 1.2635 11 6 0.4062 2.8593 1.1071 12 6 0.0148 3.4844 2.4476 13 6 -1.3087 4.1909 2.3050 14 8 -1.8826 4.1937 1.2366 15 7 -1.8552 4.8187 3.3651 16 6 -1.1622 4.8148 4.6558 17 6 -3.1388 5.5107 3.2248 18 6 -2.8967 6.9404 2.8146 19 1 -1.8875 7.2979 2.6730 20 6 -3.9634 7.7922 2.6212 21 7 -3.7521 9.0400 2.2637 22 14 -5.7090 7.1738 2.8669 23 1 -6.1151 7.3865 4.2794 24 1 -6.6288 7.9184 1.9699 25 1 -5.7705 5.7250 2.5470 26 1 -0.3633 0.6273 -0.8140 27 1 -0.3633 -1.0186 -0.1363 28 1 -0.3633 0.3913 0.9503 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.7710 -0.5023 0.8056 32 1 3.7684 -0.4925 -0.9744 33 1 5.2108 0.0496 -0.0836 34 1 4.8808 2.8513 0.9869 35 1 4.2934 1.4879 1.9920 36 1 2.7286 3.9352 1.0011 37 1 2.7947 3.2533 2.6587 38 1 -0.3821 2.1822 0.7779 39 1 0.5426 3.6462 0.3653 40 1 0.7781 4.2007 2.7513 41 1 -0.0703 2.7023 3.2021 42 1 -1.4836 3.9512 5.2381 43 1 -0.0862 4.7614 4.4904 44 1 -1.4014 5.7288 5.1994 45 1 -3.7396 5.0113 2.4647 46 1 -3.6683 5.4906 4.1774 47 1 -4.5026 9.6392 2.1272 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185680744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:25 Heat of formation + Delta-G solvation = -38.920317 kcal Electronic energy + Delta-G solvation = -23153.655260 eV Core-core repulsion = 19950.133434 eV Total energy + Delta-G solvation = -3203.521827 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.95746 -38.88031 -34.99454 -34.30102 -33.29235 -32.53636 -30.59371 -28.75211 -28.06861 -26.06799 -25.49911 -24.10170 -22.69171 -21.63160 -20.72114 -19.23192 -18.21887 -16.95223 -16.77410 -15.92907 -15.56578 -15.41622 -14.99298 -14.87452 -14.19379 -13.86042 -13.81502 -13.38313 -13.08840 -12.96826 -12.66255 -12.41322 -12.32034 -12.24365 -12.03266 -11.92779 -11.68500 -11.53731 -11.48122 -11.14583 -11.10334 -10.93693 -10.80366 -10.60453 -10.50290 -10.47199 -10.28206 -10.09015 -9.53577 -8.96961 -8.58649 -8.43668 -7.67322 -6.08070 -4.06703 3.27641 3.35722 3.39413 3.40877 3.69276 4.11699 4.40590 4.41302 4.49978 4.68423 5.00232 5.12104 5.15230 5.17898 5.21392 5.26127 5.29109 5.33431 5.38657 5.47043 5.55256 5.58688 5.61175 5.72357 5.78045 5.80842 5.85791 5.89786 5.90263 5.95250 6.01580 6.04735 6.10067 6.13043 6.19217 6.30665 6.39664 6.68418 6.91272 7.00351 7.06839 7.36634 7.62473 8.28159 8.48160 8.93837 9.01948 9.52472 11.05421 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028741 B = 0.003480 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.969705 B = 8043.173263 C = 8343.012160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.105 4.105 3 C 0.068 3.932 4 H 0.052 0.948 5 C -0.100 4.100 6 H 0.072 0.928 7 C -0.142 4.142 8 C -0.118 4.118 9 C 0.030 3.970 10 N -0.511 5.511 11 C 0.056 3.944 12 C -0.132 4.132 13 C 0.507 3.493 14 O -0.544 6.544 15 N -0.599 5.599 16 C 0.084 3.916 17 C 0.215 3.785 18 C -0.528 4.528 19 H 0.073 0.927 20 C 0.071 3.929 21 N -0.899 5.899 22 Si 0.876 3.124 23 H -0.275 1.275 24 H -0.284 1.284 25 H -0.264 1.264 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.042 0.958 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.045 0.955 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.041 0.959 46 H 0.025 0.975 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.258 -17.890 -0.045 23.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.143 4.143 3 C -0.040 4.040 4 H 0.071 0.929 5 C -0.119 4.119 6 H 0.090 0.910 7 C -0.199 4.199 8 C -0.156 4.156 9 C -0.098 4.098 10 N -0.236 5.236 11 C -0.072 4.072 12 C -0.173 4.173 13 C 0.294 3.706 14 O -0.422 6.422 15 N -0.331 5.331 16 C -0.060 4.060 17 C 0.094 3.906 18 C -0.567 4.567 19 H 0.091 0.909 20 C -0.131 4.131 21 N -0.537 5.537 22 Si 0.702 3.298 23 H -0.201 1.201 24 H -0.209 1.209 25 H -0.188 1.188 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.060 0.940 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.059 0.941 46 H 0.043 0.957 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.733 -18.084 -0.230 23.327 hybrid contribution -0.829 0.745 -0.422 1.192 sum 13.904 -17.339 -0.652 22.235 Atomic orbital electron populations 1.21915 0.96024 1.01044 1.02456 1.21607 0.95780 0.95228 1.01702 1.22449 0.94143 0.95910 0.91506 0.92950 1.22008 0.94540 0.97023 0.98356 0.90989 1.21919 1.00095 0.95702 1.02210 1.22564 0.97079 0.98731 0.97261 1.23260 0.90441 0.94632 1.01439 1.64696 1.02222 1.26732 1.29907 1.22175 0.92089 0.97008 0.95916 1.21593 0.95870 1.00356 0.99476 1.20349 0.86811 0.79400 0.84067 1.90660 1.63478 1.61452 1.26612 1.47843 1.23415 1.52394 1.09476 1.21659 0.96564 1.01916 0.85884 1.19653 0.80892 0.93153 0.96879 1.21340 0.95467 0.93009 1.46863 0.90869 1.24864 0.99046 0.94685 0.94489 1.69896 1.31612 1.04932 1.47270 0.86847 0.84818 0.79768 0.78325 1.20091 1.20946 1.18814 0.93060 0.93243 0.91663 0.91918 0.91067 0.91836 0.92478 0.93120 0.91376 0.90705 0.93619 0.89945 0.89078 0.94002 0.89655 0.88852 0.93628 0.92121 0.90695 0.94130 0.95721 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 8.53 37.16 0.32 -1.38 16 2 C -0.11 -1.01 4.44 -26.73 -0.12 -1.13 16 3 C 0.07 0.73 2.62 -66.65 -0.17 0.55 16 4 H 0.05 0.63 7.76 -51.93 -0.40 0.22 16 5 C -0.10 -0.88 3.59 -89.27 -0.32 -1.20 16 6 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 7 C -0.14 -1.04 7.91 37.16 0.29 -0.75 16 8 C -0.12 -1.03 6.60 -24.87 -0.16 -1.19 16 9 C 0.03 0.32 5.63 -1.89 -0.01 0.31 16 10 N -0.51 -6.05 4.78 -222.57 -1.06 -7.12 16 11 C 0.06 0.82 3.67 -3.82 -0.01 0.80 16 12 C -0.13 -1.98 4.16 -27.89 -0.12 -2.09 16 13 C 0.51 10.47 7.67 -10.99 -0.08 10.39 16 14 O -0.54 -13.55 15.54 5.56 0.09 -13.47 16 15 N -0.60 -12.57 2.86 -182.95 -0.52 -13.09 16 16 C 0.08 1.30 10.25 59.85 0.61 1.91 16 17 C 0.21 5.37 4.23 -5.19 -0.02 5.34 16 18 C -0.53 -15.44 9.94 -34.44 -0.34 -15.78 16 19 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 20 C 0.07 2.11 5.47 -17.83 -0.10 2.01 16 21 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 22 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 26 H 0.05 0.59 8.04 -51.93 -0.42 0.17 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.79 6.47 -51.93 -0.34 0.46 16 29 H 0.06 0.53 6.68 -51.93 -0.35 0.18 16 30 H 0.07 0.68 6.82 -51.93 -0.35 0.33 16 31 H 0.06 0.48 6.70 -51.93 -0.35 0.13 16 32 H 0.06 0.39 6.82 -51.93 -0.35 0.04 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.63 7.87 -51.93 -0.41 0.22 16 36 H 0.05 0.53 7.93 -51.94 -0.41 0.11 16 37 H 0.08 0.82 7.77 -51.93 -0.40 0.42 16 38 H 0.09 1.41 5.13 -51.92 -0.27 1.14 16 39 H 0.04 0.69 7.99 -51.93 -0.42 0.27 16 40 H 0.09 1.17 6.48 -51.93 -0.34 0.83 16 41 H 0.09 1.22 8.11 -51.93 -0.42 0.80 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.78 6.43 -51.93 -0.33 0.45 16 44 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 45 H 0.04 1.09 6.48 -51.93 -0.34 0.76 16 46 H 0.02 0.58 7.50 -51.93 -0.39 0.19 16 47 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 356.20 15.07 5.37 5.37 Total: -1.00 -33.59 356.20 -8.67 -42.26 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -8.41 Total: -1.62 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -0.24 Total: -2.21 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.81 Total: -47.47 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.09 Total: -13.47 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.59 -8.67 -42.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185680744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.340 kcal (2) G-P(sol) polarization free energy of solvation -33.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds