Wall clock time and date at job start Tue Mar 31 2020 05:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47052 * 2 1 4 4 H 1.08991 * 110.46068 * 307.93738 * 3 2 1 5 5 C 1.54377 * 110.41114 * 70.35166 * 3 2 1 6 6 H 1.09001 * 110.41396 * 23.68903 * 5 3 2 7 7 C 1.53006 * 110.32319 * 261.52776 * 5 3 2 8 8 C 1.54260 * 105.06160 * 142.63415 * 5 3 2 9 9 C 1.54370 * 105.06125 * 359.97438 * 8 5 3 10 10 N 1.48561 * 110.41194 * 185.52057 * 3 2 1 11 11 C 1.46900 * 110.99854 * 82.18349 * 10 3 2 12 12 C 1.53002 * 109.47141 * 190.96402 * 11 10 3 13 13 C 1.50698 * 109.46919 * 179.97438 * 12 11 10 14 14 O 1.21276 * 120.00481 * 0.02562 * 13 12 11 15 15 N 1.34786 * 119.99745 * 179.97438 * 13 12 11 16 16 C 1.46498 * 119.99707 * 359.97438 * 15 13 12 17 17 C 1.46497 * 120.00019 * 180.02562 * 15 13 12 18 18 C 1.50702 * 109.47271 * 89.99888 * 17 15 13 19 19 H 1.08005 * 119.99485 * 0.02562 * 18 17 15 20 20 C 1.37872 * 120.00042 * 179.97438 * 18 17 15 21 21 N 1.31513 * 120.00087 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99832 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47117 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.47252 * 240.00019 * 22 20 18 25 25 H 1.48509 * 109.46724 * 120.00208 * 22 20 18 26 26 H 1.09005 * 109.47245 * 293.75066 * 1 2 3 27 27 H 1.08998 * 109.47241 * 53.75323 * 1 2 3 28 28 H 1.08999 * 109.46934 * 173.75449 * 1 2 3 29 29 H 1.08997 * 109.47399 * 239.99998 * 2 1 3 30 30 H 1.09003 * 109.47188 * 119.99917 * 2 1 3 31 31 H 1.09003 * 109.47118 * 302.91076 * 7 5 3 32 32 H 1.09003 * 109.46786 * 62.90762 * 7 5 3 33 33 H 1.09000 * 109.47478 * 182.90756 * 7 5 3 34 34 H 1.09007 * 110.32049 * 241.09994 * 8 5 3 35 35 H 1.08998 * 110.41289 * 118.94241 * 8 5 3 36 36 H 1.09003 * 110.41592 * 217.37130 * 9 8 5 37 37 H 1.08996 * 110.51131 * 94.97820 * 9 8 5 38 38 H 1.08998 * 109.47527 * 70.96468 * 11 10 3 39 39 H 1.09002 * 109.46651 * 310.96154 * 11 10 3 40 40 H 1.08998 * 109.46856 * 59.99655 * 12 11 10 41 41 H 1.08995 * 109.47019 * 299.99818 * 12 11 10 42 42 H 1.08997 * 109.47293 * 269.99432 * 16 15 13 43 43 H 1.08999 * 109.47311 * 30.00496 * 16 15 13 44 44 H 1.09007 * 109.46881 * 150.00015 * 16 15 13 45 45 H 1.09001 * 109.46894 * 330.00154 * 17 15 13 46 46 H 1.08993 * 109.47098 * 209.99934 * 17 15 13 47 47 H 0.96999 * 120.00017 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5750 2.0110 -0.8054 5 6 1.7607 2.1123 1.3626 6 1 1.6607 1.3584 2.1434 7 6 0.4939 2.9669 1.2850 8 6 2.9917 3.0023 1.6315 9 6 3.9114 2.7949 0.4092 10 7 3.5192 1.4691 -0.1339 11 6 3.9230 1.3357 -1.5401 12 6 5.4317 1.0930 -1.6167 13 6 5.8457 0.9555 -3.0591 14 8 5.0160 1.0435 -3.9393 15 7 7.1384 0.7359 -3.3712 16 6 8.1409 0.6313 -2.3081 17 6 7.5410 0.6028 -4.7735 18 6 7.9005 1.9589 -5.3238 19 1 7.8359 2.8325 -4.6920 20 6 8.3128 2.0842 -6.6335 21 7 8.3919 1.0204 -7.4026 22 14 8.7577 3.7653 -7.3158 23 1 8.5852 4.7911 -6.2560 24 1 7.8707 4.0843 -8.4632 25 1 10.1714 3.7566 -7.7704 26 1 -0.3634 0.4139 0.9407 27 1 -0.3633 0.6076 -0.8288 28 1 -0.3633 -1.0216 -0.1118 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.6033 3.7077 0.4930 32 1 -0.3626 2.3281 1.0692 33 1 0.3384 3.4735 2.2375 34 1 3.4969 2.6839 2.5435 35 1 2.6949 4.0482 1.7094 36 1 4.9569 2.7857 0.7172 37 1 3.7414 3.5745 -0.3333 38 1 3.6744 2.2506 -2.0779 39 1 3.3963 0.4946 -1.9910 40 1 5.6803 0.1781 -1.0789 41 1 5.9583 1.9341 -1.1657 42 1 8.5496 1.6192 -2.0957 43 1 7.6757 0.2292 -1.4082 44 1 8.9436 -0.0324 -2.6297 45 1 6.7164 0.1837 -5.3500 46 1 8.4051 -0.0579 -4.8422 47 1 8.1605 0.1475 -7.0484 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185680760.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:28 Heat of formation + Delta-G solvation = -53.593419 kcal Electronic energy + Delta-G solvation = -22932.682950 eV Core-core repulsion = 19728.524849 eV Total energy + Delta-G solvation = -3204.158100 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.85251 -38.86440 -35.03889 -34.36294 -33.27777 -32.81811 -30.56236 -28.65686 -27.40447 -26.20833 -25.43186 -23.61464 -22.59599 -22.18128 -20.50458 -19.98686 -18.42801 -16.95677 -16.53736 -16.00716 -15.56515 -15.13904 -14.99299 -14.61826 -14.48771 -13.87481 -13.70464 -13.33601 -13.20432 -12.96716 -12.69304 -12.50114 -12.32574 -12.23905 -12.10077 -11.87785 -11.78142 -11.58495 -11.38099 -11.21629 -10.99995 -10.95760 -10.88179 -10.73823 -10.56433 -10.54679 -10.36234 -10.13124 -9.11619 -8.96438 -8.54093 -8.37067 -7.59978 -6.37722 -4.09273 3.38917 3.44051 3.48624 3.60973 3.66299 4.10223 4.37274 4.48371 4.54344 4.74976 4.94966 5.02000 5.11361 5.16527 5.17339 5.19835 5.26065 5.34643 5.38599 5.40909 5.49573 5.53795 5.57236 5.60333 5.72349 5.77937 5.79177 5.82934 5.85862 5.92123 5.95622 6.03946 6.08704 6.11544 6.14719 6.18112 6.22860 6.80390 6.85623 7.00655 7.13990 7.42331 8.05557 8.30918 8.45368 8.79235 9.03916 9.60547 10.99821 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024502 B = 0.003314 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.472139 B = 8447.669761 C = 8579.461823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C 0.066 3.934 4 H 0.054 0.946 5 C -0.090 4.090 6 H 0.079 0.921 7 C -0.148 4.148 8 C -0.121 4.121 9 C 0.030 3.970 10 N -0.510 5.510 11 C 0.062 3.938 12 C -0.129 4.129 13 C 0.505 3.495 14 O -0.546 6.546 15 N -0.600 5.600 16 C 0.087 3.913 17 C 0.235 3.765 18 C -0.605 4.605 19 H 0.051 0.949 20 C 0.018 3.982 21 N -0.911 5.911 22 Si 1.078 2.922 23 H -0.290 1.290 24 H -0.286 1.286 25 H -0.286 1.286 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.044 0.956 38 H 0.045 0.955 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.049 0.951 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.033 0.967 46 H 0.021 0.979 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.720 0.779 20.883 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.042 4.042 4 H 0.072 0.928 5 C -0.109 4.109 6 H 0.097 0.903 7 C -0.205 4.205 8 C -0.159 4.159 9 C -0.098 4.098 10 N -0.234 5.234 11 C -0.067 4.067 12 C -0.170 4.170 13 C 0.291 3.709 14 O -0.424 6.424 15 N -0.332 5.332 16 C -0.057 4.057 17 C 0.115 3.885 18 C -0.644 4.644 19 H 0.069 0.931 20 C -0.186 4.186 21 N -0.548 5.548 22 Si 0.906 3.094 23 H -0.216 1.216 24 H -0.212 1.212 25 H -0.213 1.213 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.051 0.949 46 H 0.039 0.961 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.344 1.158 19.313 22.428 hybrid contribution -0.620 -0.060 0.906 1.100 sum -11.963 1.098 20.220 23.520 Atomic orbital electron populations 1.21831 0.95840 1.01618 1.01716 1.21444 0.95101 0.95431 1.02736 1.22757 0.88321 0.96531 0.96579 0.92832 1.21914 0.94641 0.97385 0.96999 0.90285 1.21970 0.97277 0.99665 1.01631 1.22389 0.95684 0.99512 0.98308 1.23134 1.00086 0.90376 0.96222 1.65264 1.10385 1.29653 1.18080 1.21963 0.94969 1.02118 0.87606 1.21545 0.96759 1.03763 0.94915 1.20362 0.82610 0.77393 0.90514 1.90657 1.50803 1.50690 1.50276 1.47959 1.06396 1.69939 1.08923 1.21621 0.92521 1.01327 0.90260 1.19351 0.95070 0.97727 0.76389 1.22304 1.49121 0.93543 0.99396 0.93066 1.25822 0.94364 1.04973 0.93415 1.70739 1.45693 0.99684 1.38646 0.83427 0.76650 0.73870 0.75464 1.21646 1.21200 1.21275 0.92527 0.92814 0.92687 0.91737 0.91326 0.92751 0.92160 0.92607 0.91169 0.91387 0.90120 0.93730 0.93659 0.90099 0.88908 0.89754 0.93210 0.92240 0.91584 0.94903 0.96134 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.10 37.15 0.34 -0.92 16 2 C -0.11 -1.09 5.59 -26.73 -0.15 -1.24 16 3 C 0.07 0.71 1.83 -66.07 -0.12 0.59 16 4 H 0.05 0.63 7.70 -51.93 -0.40 0.23 16 5 C -0.09 -0.79 2.78 -89.24 -0.25 -1.04 16 6 H 0.08 0.67 7.74 -51.93 -0.40 0.27 16 7 C -0.15 -1.12 8.77 37.16 0.33 -0.79 16 8 C -0.12 -1.07 6.64 -25.35 -0.17 -1.24 16 9 C 0.03 0.32 5.95 -2.20 -0.01 0.31 16 10 N -0.51 -6.22 5.01 -222.16 -1.11 -7.34 16 11 C 0.06 0.92 4.07 -3.82 -0.02 0.91 16 12 C -0.13 -2.00 4.38 -27.88 -0.12 -2.12 16 13 C 0.50 10.79 7.67 -10.98 -0.08 10.71 16 14 O -0.55 -14.07 15.56 5.56 0.09 -13.98 16 15 N -0.60 -13.18 2.86 -182.96 -0.52 -13.70 16 16 C 0.09 1.42 10.28 59.85 0.62 2.04 16 17 C 0.23 6.28 4.52 -5.19 -0.02 6.25 16 18 C -0.60 -17.77 9.39 -34.44 -0.32 -18.10 16 19 H 0.05 1.53 7.81 -52.48 -0.41 1.12 16 20 C 0.02 0.54 5.46 -17.82 -0.10 0.44 16 21 N -0.91 -28.27 13.65 55.43 0.76 -27.51 16 22 Si 1.08 26.16 29.90 -169.99 -5.08 21.08 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H 0.06 0.41 6.37 -51.93 -0.33 0.08 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.73 7.18 -51.93 -0.37 0.36 16 30 H 0.07 0.67 7.96 -51.93 -0.41 0.26 16 31 H 0.05 0.44 8.12 -51.93 -0.42 0.02 16 32 H 0.06 0.43 6.06 -51.93 -0.31 0.11 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.54 7.71 -51.93 -0.40 0.14 16 36 H 0.08 0.84 7.87 -51.93 -0.41 0.43 16 37 H 0.04 0.52 7.73 -51.93 -0.40 0.12 16 38 H 0.05 0.75 7.70 -51.93 -0.40 0.35 16 39 H 0.08 1.28 7.04 -51.93 -0.37 0.92 16 40 H 0.09 1.27 7.40 -51.93 -0.38 0.89 16 41 H 0.08 1.20 7.48 -51.93 -0.39 0.81 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 44 H 0.07 1.04 7.90 -51.92 -0.41 0.63 16 45 H 0.03 0.98 7.29 -51.93 -0.38 0.60 16 46 H 0.02 0.55 7.76 -51.93 -0.40 0.14 16 47 H 0.27 8.25 7.22 -40.82 -0.29 7.96 16 LS Contribution 363.92 15.07 5.48 5.48 Total: -1.00 -33.84 363.92 -9.02 -42.86 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -8.54 Total: -2.70 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -0.09 Total: -4.19 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -0.88 Total: -48.55 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.09 Total: -13.98 kcal Atomic # 14 Polarization: 26.16 SS G_CDS: -5.08 Total: 21.08 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.84 -9.02 -42.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185680760.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.732 kcal (2) G-P(sol) polarization free energy of solvation -33.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds