Wall clock time and date at job start Tue Mar 31 2020 05:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47166 * 2 1 4 4 H 1.09004 * 110.06183 * 54.74907 * 3 2 1 5 5 C 1.53988 * 109.91818 * 175.95344 * 3 2 1 6 6 H 1.09000 * 110.39605 * 239.53208 * 5 3 2 7 7 C 1.53002 * 110.31103 * 1.66586 * 5 3 2 8 8 C 1.54601 * 105.14018 * 120.57724 * 5 3 2 9 9 C 1.54946 * 102.91711 * 21.95778 * 8 5 3 10 10 N 1.47904 * 109.91617 * 293.54676 * 3 2 1 11 11 C 1.46903 * 110.99930 * 94.79938 * 10 3 2 12 12 C 1.53001 * 109.46949 * 187.26764 * 11 10 3 13 13 C 1.50701 * 109.46883 * 179.97438 * 12 11 10 14 14 O 1.21284 * 120.00056 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99532 * 179.97438 * 13 12 11 16 16 C 1.46494 * 120.00583 * 0.02562 * 15 13 12 17 17 C 1.46503 * 119.99393 * 180.02562 * 15 13 12 18 18 C 1.50699 * 109.46825 * 269.99942 * 17 15 13 19 19 H 1.07999 * 120.00803 * 0.02562 * 18 17 15 20 20 C 1.37881 * 119.99889 * 180.02562 * 18 17 15 21 21 N 1.31520 * 120.00186 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00030 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 89.99863 * 22 20 18 24 24 H 1.48503 * 109.47261 * 330.00044 * 22 20 18 25 25 H 1.48500 * 109.47454 * 210.00037 * 22 20 18 26 26 H 1.08996 * 109.47289 * 299.99576 * 1 2 3 27 27 H 1.09004 * 109.47110 * 59.99953 * 1 2 3 28 28 H 1.09000 * 109.46755 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47476 * 240.00214 * 2 1 3 30 30 H 1.08995 * 109.47257 * 120.00059 * 2 1 3 31 31 H 1.08994 * 109.47046 * 177.16564 * 7 5 3 32 32 H 1.08998 * 109.46822 * 297.16712 * 7 5 3 33 33 H 1.09005 * 109.47182 * 57.16593 * 7 5 3 34 34 H 1.09002 * 110.72642 * 263.60276 * 8 5 3 35 35 H 1.09000 * 110.72432 * 140.31288 * 8 5 3 36 36 H 1.09003 * 110.66532 * 204.15139 * 9 8 5 37 37 H 1.09003 * 110.66383 * 81.02013 * 9 8 5 38 38 H 1.08996 * 109.46647 * 67.27214 * 11 10 3 39 39 H 1.08996 * 109.47321 * 307.27351 * 11 10 3 40 40 H 1.09003 * 109.46933 * 60.00339 * 12 11 10 41 41 H 1.08990 * 109.47156 * 300.00436 * 12 11 10 42 42 H 1.09001 * 109.47000 * 270.00032 * 16 15 13 43 43 H 1.09004 * 109.46862 * 29.99455 * 16 15 13 44 44 H 1.08990 * 109.47708 * 149.99604 * 16 15 13 45 45 H 1.09004 * 109.46958 * 150.00353 * 17 15 13 46 46 H 1.08997 * 109.47731 * 30.00029 * 17 15 13 47 47 H 0.96998 * 120.00124 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6075 1.9921 0.8361 5 6 3.5764 1.4558 0.1022 6 1 3.8932 1.9976 0.9933 7 6 4.1191 0.0255 0.1303 8 6 4.0595 2.1879 -1.1709 9 6 2.8158 3.0118 -1.5896 10 7 1.6842 2.1027 -1.2748 11 6 0.4270 2.8519 -1.1467 12 6 -0.0016 3.3677 -2.5219 13 6 -1.2916 4.1357 -2.3906 14 8 -1.8162 4.2587 -1.3040 15 7 -1.8617 4.6866 -3.4805 16 6 -1.2278 4.5385 -4.7929 17 6 -3.1155 5.4336 -3.3528 18 6 -4.2803 4.4938 -3.5290 19 1 -4.1044 3.4450 -3.7170 20 6 -5.5707 4.9731 -3.4504 21 7 -6.5873 4.1528 -3.6037 22 14 -5.8752 6.7873 -3.1260 23 1 -5.9478 7.5158 -4.4181 24 1 -4.7636 7.3375 -2.3094 25 1 -7.1561 6.9510 -2.3928 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 5.2086 0.0507 0.1519 32 1 3.7498 -0.4858 1.0192 33 1 3.7856 -0.5073 -0.7603 34 1 4.3282 1.4730 -1.9486 35 1 4.8986 2.8451 -0.9430 36 1 2.8440 3.2359 -2.6560 37 1 2.7470 3.9288 -1.0044 38 1 0.5738 3.6952 -0.4719 39 1 -0.3471 2.1970 -0.7468 40 1 -0.1483 2.5244 -3.1967 41 1 0.7725 4.0225 -2.9218 42 1 -0.5390 5.3667 -4.9592 43 1 -0.6792 3.5972 -4.8272 44 1 -1.9934 4.5412 -5.5686 45 1 -3.1557 6.2094 -4.1174 46 1 -3.1657 5.8933 -2.3657 47 1 -7.4951 4.4900 -3.5487 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185680800.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:35 Heat of formation + Delta-G solvation = -37.696222 kcal Electronic energy + Delta-G solvation = -23162.675618 eV Core-core repulsion = 19959.206872 eV Total energy + Delta-G solvation = -3203.468746 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.96085 -38.88170 -34.99325 -34.28946 -33.27991 -32.52690 -30.60763 -28.74058 -28.06048 -26.06536 -25.50603 -24.08190 -22.67041 -21.60701 -20.76717 -19.22973 -18.23089 -16.94477 -16.76307 -15.95050 -15.51848 -15.44857 -14.99459 -14.86552 -14.17986 -13.91373 -13.74266 -13.38679 -13.17118 -12.86347 -12.62934 -12.42719 -12.29211 -12.25985 -12.00219 -11.93289 -11.68643 -11.58969 -11.46260 -11.13903 -11.07668 -10.91682 -10.84506 -10.58363 -10.49191 -10.46338 -10.22050 -10.08686 -9.52552 -8.96829 -8.57722 -8.44118 -7.67204 -6.07062 -4.05601 3.27802 3.35919 3.39304 3.40807 3.68394 4.11956 4.40296 4.41272 4.48834 4.67614 5.00307 5.12885 5.16198 5.17367 5.21769 5.27019 5.29819 5.34651 5.39802 5.46572 5.55852 5.58957 5.61853 5.70297 5.77658 5.79567 5.84864 5.89632 5.90400 5.98082 6.03218 6.06424 6.12338 6.13170 6.21454 6.33459 6.48608 6.68781 6.91321 7.00291 7.06361 7.36856 7.63205 8.28364 8.49199 8.95210 9.02331 9.53355 11.06406 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028816 B = 0.003532 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.460619 B = 7925.361674 C = 8384.149697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.106 4.106 3 C 0.069 3.931 4 H 0.052 0.948 5 C -0.100 4.100 6 H 0.071 0.929 7 C -0.142 4.142 8 C -0.118 4.118 9 C 0.031 3.969 10 N -0.511 5.511 11 C 0.055 3.945 12 C -0.131 4.131 13 C 0.507 3.493 14 O -0.545 6.545 15 N -0.599 5.599 16 C 0.083 3.917 17 C 0.215 3.785 18 C -0.528 4.528 19 H 0.074 0.926 20 C 0.071 3.929 21 N -0.898 5.898 22 Si 0.875 3.125 23 H -0.275 1.275 24 H -0.264 1.264 25 H -0.284 1.284 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.043 0.957 38 H 0.041 0.959 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.044 0.956 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.024 0.976 46 H 0.040 0.960 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.796 -5.118 3.563 23.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.143 4.143 3 C -0.040 4.040 4 H 0.070 0.930 5 C -0.119 4.119 6 H 0.089 0.911 7 C -0.200 4.200 8 C -0.156 4.156 9 C -0.097 4.097 10 N -0.235 5.235 11 C -0.073 4.073 12 C -0.172 4.172 13 C 0.293 3.707 14 O -0.423 6.423 15 N -0.331 5.331 16 C -0.061 4.061 17 C 0.094 3.906 18 C -0.566 4.566 19 H 0.092 0.908 20 C -0.131 4.131 21 N -0.537 5.537 22 Si 0.702 3.298 23 H -0.201 1.201 24 H -0.189 1.189 25 H -0.209 1.209 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.101 0.899 42 H 0.062 0.938 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.042 0.958 46 H 0.058 0.942 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 22.203 -5.425 3.715 23.156 hybrid contribution -0.349 1.579 0.605 1.727 sum 21.853 -3.845 4.320 22.606 Atomic orbital electron populations 1.21955 0.95870 1.01486 1.02484 1.21614 0.95888 0.95110 1.01720 1.22433 0.94173 0.96093 0.91258 0.92996 1.22009 0.94550 0.97080 0.98265 0.91056 1.21923 1.00039 0.95696 1.02308 1.22572 0.97005 0.98782 0.97291 1.23257 0.90536 0.94527 1.01339 1.64656 1.02035 1.27075 1.29784 1.22198 0.91960 0.97217 0.95896 1.21569 0.95766 1.00614 0.99208 1.20365 0.85990 0.79893 0.84420 1.90661 1.64909 1.60036 1.26646 1.47839 1.24998 1.53644 1.06628 1.21663 0.98058 1.00241 0.86103 1.19653 0.81377 0.92007 0.97539 1.21344 0.89258 0.96638 1.49399 0.90768 1.24868 0.95925 0.97759 0.94530 1.69901 0.98716 1.34947 1.50091 0.86855 0.78309 0.85787 0.78833 1.20111 1.18876 1.20945 0.93176 0.91305 0.93053 0.91054 0.91904 0.93147 0.92430 0.91778 0.90646 0.91422 0.90007 0.93821 0.94098 0.88895 0.88598 0.89927 0.93783 0.91957 0.90650 0.95766 0.94180 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 8.85 37.16 0.33 -1.58 16 2 C -0.11 -1.07 4.43 -26.73 -0.12 -1.19 16 3 C 0.07 0.74 2.61 -66.64 -0.17 0.56 16 4 H 0.05 0.61 7.77 -51.93 -0.40 0.21 16 5 C -0.10 -0.86 3.59 -89.26 -0.32 -1.18 16 6 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 7 C -0.14 -1.05 7.91 37.16 0.29 -0.76 16 8 C -0.12 -0.99 6.61 -24.86 -0.16 -1.15 16 9 C 0.03 0.31 5.81 -1.90 -0.01 0.30 16 10 N -0.51 -6.05 4.74 -222.57 -1.05 -7.11 16 11 C 0.06 0.80 3.57 -3.82 -0.01 0.79 16 12 C -0.13 -1.96 4.31 -27.88 -0.12 -2.08 16 13 C 0.51 10.46 7.67 -10.99 -0.08 10.37 16 14 O -0.54 -13.56 15.56 5.55 0.09 -13.47 16 15 N -0.60 -12.57 2.86 -182.96 -0.52 -13.09 16 16 C 0.08 1.30 10.24 59.84 0.61 1.91 16 17 C 0.21 5.37 4.23 -5.19 -0.02 5.35 16 18 C -0.53 -15.44 9.94 -34.44 -0.34 -15.78 16 19 H 0.07 2.38 8.06 -52.49 -0.42 1.95 16 20 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 21 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 22 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 25 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.94 5.85 -51.93 -0.30 0.64 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.73 6.89 -51.93 -0.36 0.37 16 30 H 0.06 0.55 6.61 -51.93 -0.34 0.21 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.40 6.79 -51.93 -0.35 0.05 16 33 H 0.06 0.50 6.73 -51.93 -0.35 0.15 16 34 H 0.07 0.62 7.86 -51.93 -0.41 0.21 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.77 7.76 -51.93 -0.40 0.37 16 37 H 0.04 0.46 7.85 -51.93 -0.41 0.05 16 38 H 0.04 0.64 7.85 -51.93 -0.41 0.23 16 39 H 0.09 1.50 5.14 -51.93 -0.27 1.24 16 40 H 0.10 1.36 7.40 -51.93 -0.38 0.98 16 41 H 0.08 1.04 7.21 -51.93 -0.37 0.67 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.81 6.44 -51.93 -0.33 0.48 16 44 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 45 H 0.02 0.57 7.50 -51.93 -0.39 0.18 16 46 H 0.04 1.08 6.48 -51.93 -0.34 0.74 16 47 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 356.01 15.07 5.37 5.37 Total: -1.00 -33.60 356.01 -8.62 -42.22 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -8.37 Total: -1.39 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -0.23 Total: -2.42 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.80 Total: -47.46 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.09 Total: -13.47 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.60 -8.62 -42.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185680800.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.529 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds