Wall clock time and date at job start Tue Mar 31 2020 06:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46846 * 2 1 4 4 N 1.46498 * 109.47029 * 120.00086 * 2 1 3 5 5 C 1.46497 * 120.00426 * 304.58095 * 4 2 1 6 6 C 1.52994 * 109.47020 * 270.27939 * 5 4 2 7 7 C 1.53780 * 113.61473 * 274.12965 * 6 5 4 8 8 C 1.53960 * 87.02269 * 220.05042 * 7 6 5 9 9 C 1.53785 * 113.61135 * 176.52435 * 6 5 4 10 10 C 1.34778 * 119.99530 * 124.85736 * 4 2 1 11 11 O 1.21585 * 120.00678 * 355.14161 * 10 4 2 12 12 N 1.34785 * 119.99588 * 175.13394 * 10 4 2 13 13 C 1.46505 * 119.99488 * 185.20132 * 12 10 4 14 14 C 1.53004 * 109.46534 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47073 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47591 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99565 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00375 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99809 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99822 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47030 * 60.00564 * 20 18 16 22 22 H 1.48506 * 109.46826 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47321 * 300.00210 * 20 18 16 24 24 H 1.08999 * 109.47164 * 299.99965 * 1 2 3 25 25 H 1.09002 * 109.47218 * 59.99974 * 1 2 3 26 26 H 1.09003 * 109.47090 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47164 * 240.00035 * 2 1 3 28 28 H 1.09004 * 109.47025 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47801 * 300.00011 * 3 2 1 30 30 H 1.09006 * 109.47001 * 60.00386 * 3 2 1 31 31 H 1.09005 * 109.46728 * 30.27467 * 5 4 2 32 32 H 1.08999 * 109.47510 * 150.27560 * 5 4 2 33 33 H 1.08997 * 112.85534 * 45.33277 * 6 5 4 34 34 H 1.08996 * 113.61676 * 334.57167 * 7 6 5 35 35 H 1.09002 * 113.61062 * 105.47004 * 7 6 5 36 36 H 1.08993 * 113.53795 * 270.81556 * 8 7 6 37 37 H 1.08999 * 113.66377 * 139.93218 * 8 7 6 38 38 H 1.08995 * 113.61789 * 254.52481 * 9 6 5 39 39 H 1.09003 * 113.61853 * 25.35159 * 9 6 5 40 40 H 0.96996 * 120.00356 * 5.20602 * 12 10 4 41 41 H 1.08994 * 109.47272 * 300.00305 * 13 12 10 42 42 H 1.09003 * 109.47146 * 60.00916 * 13 12 10 43 43 H 1.08999 * 109.47349 * 300.00546 * 14 13 12 44 44 H 1.09003 * 109.46667 * 60.00609 * 14 13 12 45 45 H 1.09003 * 109.47336 * 300.00944 * 15 14 13 46 46 H 1.09000 * 109.46892 * 59.99946 * 15 14 13 47 47 H 0.97006 * 119.99695 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.5836 -0.2514 2.5244 6 6 2.5480 0.8134 3.0504 7 6 3.7779 0.2309 3.7664 8 6 3.6216 1.3702 4.7901 9 6 2.1324 1.4043 4.4080 10 6 2.8718 -1.7266 1.0748 11 8 3.1677 -2.1447 -0.0279 12 7 3.3976 -2.2990 2.1760 13 6 4.4113 -3.3484 2.0429 14 6 4.8373 -3.8250 3.4330 15 6 5.8963 -4.9204 3.2943 16 6 6.3155 -5.3904 4.6633 17 1 5.8706 -4.9519 5.5444 18 6 7.2661 -6.3808 4.7912 19 7 7.8074 -6.9151 3.7184 20 14 7.7850 -6.9638 6.4884 21 1 6.6043 -7.5047 7.2084 22 1 8.8131 -8.0269 6.3536 23 1 8.3507 -5.8228 7.2522 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 0.5799 0.1686 2.4577 32 1 1.5766 -1.1031 3.2046 33 1 2.7944 1.5676 2.3030 34 1 3.6094 -0.7603 4.1873 35 1 4.6945 0.2924 3.1798 36 1 4.1629 2.2765 4.5187 37 1 3.8012 1.0609 5.8198 38 1 1.7225 2.4119 4.3386 39 1 1.5119 0.7351 5.0040 40 1 3.1049 -2.0163 3.0564 41 1 3.9956 -4.1863 1.4834 42 1 5.2775 -2.9517 1.5133 43 1 5.2528 -2.9872 3.9929 44 1 3.9709 -4.2217 3.9623 45 1 5.4812 -5.7583 2.7341 46 1 6.7625 -4.5233 2.7651 47 1 8.4759 -7.6122 3.8083 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193612147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:43 Heat of formation + Delta-G solvation = -28.491784 kcal Electronic energy + Delta-G solvation = -23151.578957 eV Core-core repulsion = 19948.509346 eV Total energy + Delta-G solvation = -3203.069612 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.56905 -38.61872 -36.63517 -35.15190 -33.44780 -32.28819 -30.70168 -28.42695 -27.47582 -26.53677 -25.77007 -23.37128 -23.16251 -21.44576 -20.65559 -19.56656 -19.18041 -17.97999 -16.51874 -16.16984 -15.81870 -15.57721 -14.78485 -14.63977 -14.44451 -14.33001 -14.06012 -13.73835 -13.18546 -13.08034 -12.71157 -12.60520 -12.41961 -12.20762 -12.02649 -11.79593 -11.73001 -11.65099 -11.43248 -10.97515 -10.89286 -10.86196 -10.66092 -10.59915 -10.40421 -10.36925 -9.90809 -9.82707 -9.40187 -9.11193 -8.84700 -8.38518 -8.34915 -5.99732 -4.02787 2.74359 3.33006 3.37767 3.39604 3.41880 4.04025 4.41306 4.46162 4.49444 4.52516 4.70209 4.74219 4.94904 4.98824 5.13109 5.16889 5.33612 5.35894 5.37230 5.44856 5.52753 5.54807 5.59917 5.68953 5.74199 5.76340 5.81636 5.85614 5.93042 6.00008 6.06479 6.06712 6.22860 6.31360 6.53829 6.63357 6.66228 6.88303 7.06855 7.12360 7.66027 7.79540 7.99278 8.16282 8.40311 8.83091 9.03677 9.61115 11.11541 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020253 B = 0.003640 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.154218 B = 7690.093046 C = 8709.887660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.148 3.852 3 C -0.163 4.163 4 N -0.626 5.626 5 C 0.118 3.882 6 C -0.136 4.136 7 C -0.137 4.137 8 C -0.141 4.141 9 C -0.134 4.134 10 C 0.704 3.296 11 O -0.594 6.594 12 N -0.741 5.741 13 C 0.134 3.866 14 C -0.120 4.120 15 C 0.025 3.975 16 C -0.522 4.522 17 H 0.054 0.946 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.101 0.899 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.392 0.608 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.242 19.589 -1.952 24.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.044 3.956 3 C -0.221 4.221 4 N -0.363 5.363 5 C -0.006 4.006 6 C -0.156 4.156 7 C -0.174 4.174 8 C -0.179 4.179 9 C -0.172 4.172 10 C 0.405 3.595 11 O -0.473 6.473 12 N -0.398 5.398 13 C 0.010 3.990 14 C -0.158 4.158 15 C -0.013 4.013 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.119 0.881 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.229 0.771 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.864 19.111 -2.834 24.377 hybrid contribution 0.243 -0.219 1.434 1.471 sum -14.621 18.892 -1.400 23.930 Atomic orbital electron populations 1.22157 0.95313 1.02415 1.02046 1.20864 0.93491 0.92534 0.88724 1.22283 1.01793 0.96100 1.01963 1.47178 1.49050 1.33655 1.06431 1.21533 0.98143 0.97136 0.83786 1.23266 0.96881 0.98717 0.96691 1.23053 0.98478 0.98182 0.97715 1.22817 0.96337 0.99110 0.99626 1.22900 0.96964 1.00961 0.96397 1.15963 0.78927 0.79660 0.84901 1.90889 1.65408 1.65727 1.25229 1.45685 1.44685 1.42135 1.07327 1.21497 0.89361 0.88647 0.99475 1.21883 1.00417 1.00265 0.93211 1.19014 0.92661 0.92292 0.97315 1.21165 1.22319 1.20082 0.92491 0.92743 1.25023 0.96314 0.96470 0.96616 1.69958 1.28180 1.26965 1.28162 0.86654 0.78307 0.78402 0.84593 1.20260 1.21280 1.20260 0.92426 0.91520 0.92199 0.88079 0.92280 0.91782 0.92186 0.90010 0.90903 0.88278 0.90024 0.91230 0.90391 0.91267 0.91600 0.89981 0.77061 0.91999 0.92091 0.92844 0.92927 0.96264 0.96263 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.08 37.16 0.34 -0.97 16 2 C 0.15 1.55 3.25 -67.93 -0.22 1.33 16 3 C -0.16 -1.38 8.18 37.16 0.30 -1.08 16 4 N -0.63 -7.47 2.40 -171.81 -0.41 -7.89 16 5 C 0.12 1.06 4.70 -4.05 -0.02 1.04 16 6 C -0.14 -1.16 3.55 -89.81 -0.32 -1.48 16 7 C -0.14 -1.38 6.67 -25.82 -0.17 -1.55 16 8 C -0.14 -1.20 8.09 -25.82 -0.21 -1.41 16 9 C -0.13 -0.97 7.65 -25.91 -0.20 -1.17 16 10 C 0.70 11.41 8.26 -86.91 -0.72 10.69 16 11 O -0.59 -12.07 15.69 5.29 0.08 -11.99 16 12 N -0.74 -11.45 4.92 -65.22 -0.32 -11.77 16 13 C 0.13 2.46 5.68 -4.04 -0.02 2.44 16 14 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 15 C 0.02 0.64 4.97 -27.89 -0.14 0.50 16 16 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 17 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 20 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H 0.06 0.40 6.53 -51.93 -0.34 0.06 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.10 1.31 6.91 -51.93 -0.36 0.96 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.44 6.31 -51.93 -0.33 0.12 16 31 H 0.08 0.60 6.20 -51.93 -0.32 0.28 16 32 H 0.07 0.66 6.29 -51.93 -0.33 0.34 16 33 H 0.10 0.88 5.63 -51.93 -0.29 0.58 16 34 H 0.08 0.86 6.12 -51.93 -0.32 0.55 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 40 H 0.39 5.14 3.80 -40.82 -0.16 4.99 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 363.00 15.07 5.47 5.47 Total: -1.00 -32.33 363.00 -9.71 -42.04 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -8.32 Total: 1.44 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -1.93 Total: -7.60 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.00 Total: -45.90 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.08 Total: -11.99 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.33 -9.71 -42.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193612147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.546 kcal (2) G-P(sol) polarization free energy of solvation -32.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds