Wall clock time and date at job start Tue Mar 31 2020 06:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47085 * 2 1 4 4 N 1.46496 * 109.47082 * 180.02562 * 3 2 1 5 5 C 1.36939 * 120.00210 * 89.99955 * 4 3 2 6 6 H 1.08006 * 119.99413 * 21.12089 * 5 4 3 7 7 C 1.38809 * 120.00081 * 201.12033 * 5 4 3 8 8 N 1.31616 * 120.00339 * 4.43650 * 7 5 4 9 9 Si 1.86800 * 119.99790 * 184.42921 * 7 5 4 10 10 H 1.48497 * 109.47169 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46839 * 120.00518 * 9 7 5 12 12 H 1.48501 * 109.47377 * 240.00133 * 9 7 5 13 13 C 1.46496 * 120.00024 * 269.99611 * 4 3 2 14 14 C 1.50706 * 109.47232 * 87.25068 * 13 4 3 15 15 O 1.21285 * 119.99798 * 0.02562 * 14 13 4 16 16 N 1.34771 * 120.00217 * 180.02562 * 14 13 4 17 17 C 1.46929 * 120.62963 * 354.27472 * 16 14 13 18 18 H 1.09001 * 109.58605 * 6.63351 * 17 16 14 19 19 C 1.53001 * 109.58666 * 246.20230 * 17 16 14 20 20 C 1.53631 * 108.54175 * 126.37009 * 17 16 14 21 21 C 1.53042 * 109.24148 * 54.85657 * 20 17 16 22 22 C 1.53044 * 109.53769 * 298.50966 * 21 20 17 23 23 C 1.46927 * 120.62880 * 174.55639 * 16 14 13 24 24 H 1.09001 * 109.58711 * 113.80312 * 23 16 14 25 25 C 1.52992 * 109.58752 * 353.51474 * 23 16 14 26 26 H 1.08995 * 109.47446 * 299.99623 * 1 2 3 27 27 H 1.08991 * 109.47412 * 60.00514 * 1 2 3 28 28 H 1.09006 * 109.46933 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47212 * 239.99545 * 2 1 3 30 30 H 1.09002 * 109.47000 * 119.99815 * 2 1 3 31 31 H 1.09001 * 109.46640 * 300.00131 * 3 2 1 32 32 H 1.08995 * 109.46926 * 59.99416 * 3 2 1 33 33 H 0.96998 * 120.00518 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47385 * 207.24787 * 13 4 3 35 35 H 1.08996 * 109.47505 * 327.25247 * 13 4 3 36 36 H 1.08998 * 109.46933 * 60.00494 * 19 17 16 37 37 H 1.08997 * 109.46797 * 180.02562 * 19 17 16 38 38 H 1.08997 * 109.47101 * 299.99899 * 19 17 16 39 39 H 1.09003 * 109.63199 * 294.86814 * 20 17 16 40 40 H 1.08998 * 109.42857 * 174.72117 * 20 17 16 41 41 H 1.08999 * 109.46081 * 178.49435 * 21 20 17 42 42 H 1.08997 * 109.44978 * 58.51995 * 21 20 17 43 43 H 1.08997 * 109.50059 * 301.41683 * 22 21 20 44 44 H 1.09000 * 109.49748 * 181.31733 * 22 21 20 45 45 H 1.09000 * 109.47182 * 66.47855 * 25 23 16 46 46 H 1.09003 * 109.47005 * 186.47263 * 25 23 16 47 47 H 1.08996 * 109.47484 * 306.47549 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1892 1.4427 -1.1868 6 1 3.7031 1.7799 -2.0905 7 6 5.5073 1.0095 -1.2278 8 7 6.0722 0.5170 -0.1458 9 14 6.4795 1.1254 -2.8187 10 1 5.6228 1.7114 -3.8807 11 1 7.6691 1.9896 -2.6099 12 1 6.9197 -0.2319 -3.2298 13 6 4.2380 1.4424 1.2678 14 6 4.4303 0.0231 1.7367 15 8 3.9981 -0.8976 1.0761 16 7 5.0827 -0.2229 2.8901 17 6 5.7202 0.8697 3.6373 18 1 5.4666 1.8243 3.1764 19 6 7.2384 0.6797 3.6283 20 6 5.2021 0.8401 5.0833 21 6 5.4418 -0.5502 5.6766 22 6 4.6678 -1.5927 4.8665 23 6 5.1750 -1.5899 3.4209 24 1 6.2130 -1.9217 3.3973 25 6 4.3168 -2.5291 2.5712 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 6.9932 0.2140 -0.1745 34 1 5.2108 1.9129 1.1253 35 1 3.6715 1.9982 2.0149 36 1 7.5992 0.6855 2.5998 37 1 7.7093 1.4909 4.1835 38 1 7.4881 -0.2728 4.0957 39 1 4.1349 1.0613 5.0946 40 1 5.7349 1.5847 5.6747 41 1 5.0998 -0.5673 6.7114 42 1 6.5065 -0.7809 5.6420 43 1 3.6056 -1.3485 4.8798 44 1 4.8202 -2.5795 5.3036 45 1 4.7423 -2.6046 1.5706 46 1 4.2941 -3.5168 3.0318 47 1 3.3026 -2.1353 2.5060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246780233.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:34 Heat of formation + Delta-G solvation = -8.572626 kcal Electronic energy + Delta-G solvation = -25123.548650 eV Core-core repulsion = 21921.342798 eV Total energy + Delta-G solvation = -3202.205852 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.62209 -36.96361 -35.32367 -33.13826 -32.58780 -31.91136 -30.44154 -28.58715 -26.63190 -26.04067 -25.41396 -22.97598 -22.32934 -21.15921 -20.18722 -19.70037 -17.73849 -16.57108 -15.77187 -15.18680 -15.11137 -14.51432 -14.12926 -14.06279 -13.63473 -13.51049 -13.12130 -12.93880 -12.74250 -12.45182 -12.31824 -12.01597 -11.95036 -11.40336 -11.30292 -11.25214 -11.09720 -11.01171 -10.91680 -10.70719 -10.56067 -10.48153 -10.42028 -10.20399 -10.15187 -9.98849 -9.87822 -9.71917 -9.47823 -8.59453 -7.67220 -7.44582 -6.65884 -5.72013 -3.10839 3.40727 3.48650 3.49829 4.00404 4.36669 4.59631 5.01823 5.13758 5.15637 5.41958 5.46340 5.56030 5.60632 5.76019 5.82051 5.83779 5.89027 5.92568 5.97566 6.04282 6.11044 6.17291 6.22348 6.24121 6.25992 6.34469 6.38557 6.43550 6.49979 6.53510 6.60466 6.68135 6.72817 6.77081 6.92409 6.94651 7.18729 7.24116 7.31205 7.54411 7.74207 7.81645 8.41652 8.75630 9.26797 9.82908 10.00760 10.37065 11.36124 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014484 B = 0.007753 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.755658 B = 3610.606688 C = 4637.366689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.151 3.849 4 N -0.578 5.578 5 C -0.239 4.239 6 H 0.072 0.928 7 C 0.003 3.997 8 N -0.905 5.905 9 Si 0.909 3.091 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 C 0.168 3.832 14 C 0.539 3.461 15 O -0.521 6.521 16 N -0.619 5.619 17 C 0.148 3.852 18 H 0.088 0.912 19 C -0.159 4.159 20 C -0.130 4.130 21 C -0.117 4.117 22 C -0.129 4.129 23 C 0.150 3.850 24 H 0.051 0.949 25 C -0.126 4.126 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.031 0.969 33 H 0.251 0.749 34 H 0.107 0.893 35 H 0.023 0.977 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.081 0.919 46 H 0.021 0.979 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.744 0.340 11.373 11.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.025 3.975 4 N -0.297 5.297 5 C -0.369 4.369 6 H 0.090 0.910 7 C -0.194 4.194 8 N -0.551 5.551 9 Si 0.740 3.260 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C 0.038 3.962 14 C 0.329 3.671 15 O -0.395 6.395 16 N -0.357 5.357 17 C 0.043 3.957 18 H 0.106 0.894 19 C -0.218 4.218 20 C -0.168 4.168 21 C -0.154 4.154 22 C -0.168 4.168 23 C 0.046 3.954 24 H 0.069 0.931 25 C -0.183 4.183 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.125 0.875 35 H 0.040 0.960 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.100 0.900 46 H 0.039 0.961 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.854 -0.169 10.921 11.079 hybrid contribution 0.850 -0.289 -0.712 1.146 sum -1.004 -0.458 10.209 10.268 Atomic orbital electron populations 1.21796 0.98497 1.00071 1.00261 1.22197 0.92103 1.00406 1.03271 1.20905 0.84572 0.94002 0.98059 1.43841 0.99571 1.84327 1.01957 1.19273 0.94470 1.35684 0.87453 0.91048 1.24882 0.98346 0.99038 0.97150 1.69643 1.12927 1.46104 1.26468 0.86107 0.79728 0.76998 0.83169 1.20605 1.21973 1.21991 1.20659 0.98122 0.91462 0.85958 1.21817 0.74539 0.93859 0.76915 1.90505 1.50577 1.45466 1.52996 1.48383 1.57179 1.05567 1.24618 1.21039 0.92332 0.91549 0.90828 0.89369 1.22122 0.95953 1.00779 1.02902 1.22031 1.01293 0.96936 0.96568 1.21503 1.00410 0.95249 0.98261 1.22006 1.00205 0.98427 0.96129 1.20902 0.98395 0.84264 0.91830 0.93139 1.22111 1.00820 0.95054 1.00363 0.93947 0.93767 0.94092 0.92335 0.91411 0.93980 0.95069 0.93819 0.87548 0.95956 0.91250 0.92898 0.93061 0.91914 0.91709 0.92704 0.91944 0.92045 0.92088 0.90008 0.96065 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.91 37.16 0.37 -2.11 16 2 C -0.14 -2.94 5.45 -26.73 -0.15 -3.09 16 3 C 0.15 3.25 5.71 -4.04 -0.02 3.23 16 4 N -0.58 -14.34 2.12 -174.62 -0.37 -14.71 16 5 C -0.24 -6.50 9.71 -15.06 -0.15 -6.64 16 6 H 0.07 1.93 7.82 -52.48 -0.41 1.52 16 7 C 0.00 0.07 5.24 -17.43 -0.09 -0.02 16 8 N -0.90 -24.76 8.38 55.49 0.47 -24.30 16 9 Si 0.91 22.09 29.56 -169.99 -5.02 17.06 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 13 C 0.17 3.88 3.80 -5.19 -0.02 3.86 16 14 C 0.54 12.33 5.38 -10.99 -0.06 12.27 16 15 O -0.52 -13.42 8.87 5.55 0.05 -13.37 16 16 N -0.62 -11.76 2.68 -157.47 -0.42 -12.18 16 17 C 0.15 2.34 3.14 -67.37 -0.21 2.13 16 18 H 0.09 1.46 5.93 -51.93 -0.31 1.15 16 19 C -0.16 -2.39 9.03 37.16 0.34 -2.05 16 20 C -0.13 -1.66 5.58 -26.38 -0.15 -1.81 16 21 C -0.12 -1.42 5.68 -26.69 -0.15 -1.57 16 22 C -0.13 -1.80 5.38 -26.61 -0.14 -1.94 16 23 C 0.15 2.62 3.07 -67.60 -0.21 2.41 16 24 H 0.05 0.90 7.48 -51.93 -0.39 0.51 16 25 C -0.13 -2.42 7.62 37.15 0.28 -2.14 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.07 1.56 6.08 -51.93 -0.32 1.24 16 31 H 0.04 0.88 8.03 -51.93 -0.42 0.46 16 32 H 0.03 0.61 7.92 -51.93 -0.41 0.20 16 33 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.11 2.65 5.94 -51.93 -0.31 2.34 16 35 H 0.02 0.47 7.71 -51.93 -0.40 0.07 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.73 5.71 -51.93 -0.30 0.44 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.75 6.49 -51.93 -0.34 0.41 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.08 1.87 6.61 -51.93 -0.34 1.53 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.06 1.26 6.89 -51.93 -0.36 0.90 16 LS Contribution 346.24 15.07 5.22 5.22 Total: -1.00 -29.14 346.24 -8.94 -38.09 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -8.50 Total: 1.68 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -0.36 Total: 2.52 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.33 Total: -51.19 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.05 Total: -13.37 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.14 -8.94 -38.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246780233.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.513 kcal (2) G-P(sol) polarization free energy of solvation -29.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds