Wall clock time and date at job start Tue Mar 31 2020 06:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47085 * 2 1 4 4 N 1.46496 * 109.47082 * 180.02562 * 3 2 1 5 5 C 1.36939 * 120.00210 * 89.99955 * 4 3 2 6 6 H 1.08006 * 119.99413 * 21.12089 * 5 4 3 7 7 C 1.38809 * 120.00081 * 201.12033 * 5 4 3 8 8 N 1.31616 * 120.00339 * 4.43650 * 7 5 4 9 9 Si 1.86800 * 119.99790 * 184.42921 * 7 5 4 10 10 H 1.48497 * 109.47169 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46839 * 120.00518 * 9 7 5 12 12 H 1.48501 * 109.47377 * 240.00133 * 9 7 5 13 13 C 1.46496 * 120.00024 * 269.99611 * 4 3 2 14 14 C 1.50706 * 109.47232 * 87.25068 * 13 4 3 15 15 O 1.21285 * 119.99798 * 0.02562 * 14 13 4 16 16 N 1.34771 * 120.00217 * 180.02562 * 14 13 4 17 17 C 1.46929 * 120.62963 * 354.27472 * 16 14 13 18 18 H 1.09001 * 109.58605 * 6.63351 * 17 16 14 19 19 C 1.53001 * 109.58666 * 246.20230 * 17 16 14 20 20 C 1.53631 * 108.54175 * 126.37009 * 17 16 14 21 21 C 1.53042 * 109.24148 * 54.85657 * 20 17 16 22 22 C 1.53044 * 109.53769 * 298.50966 * 21 20 17 23 23 C 1.46927 * 120.62880 * 174.55639 * 16 14 13 24 24 H 1.09001 * 109.58711 * 113.80312 * 23 16 14 25 25 C 1.52992 * 109.58752 * 353.51474 * 23 16 14 26 26 H 1.08995 * 109.47446 * 299.99623 * 1 2 3 27 27 H 1.08991 * 109.47412 * 60.00514 * 1 2 3 28 28 H 1.09006 * 109.46933 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47212 * 239.99545 * 2 1 3 30 30 H 1.09002 * 109.47000 * 119.99815 * 2 1 3 31 31 H 1.09001 * 109.46640 * 300.00131 * 3 2 1 32 32 H 1.08995 * 109.46926 * 59.99416 * 3 2 1 33 33 H 0.96998 * 120.00518 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47385 * 207.24787 * 13 4 3 35 35 H 1.08996 * 109.47505 * 327.25247 * 13 4 3 36 36 H 1.08998 * 109.46933 * 60.00494 * 19 17 16 37 37 H 1.08997 * 109.46797 * 180.02562 * 19 17 16 38 38 H 1.08997 * 109.47101 * 299.99899 * 19 17 16 39 39 H 1.09003 * 109.63199 * 294.86814 * 20 17 16 40 40 H 1.08998 * 109.42857 * 174.72117 * 20 17 16 41 41 H 1.08999 * 109.46081 * 178.49435 * 21 20 17 42 42 H 1.08997 * 109.44978 * 58.51995 * 21 20 17 43 43 H 1.08997 * 109.50059 * 301.41683 * 22 21 20 44 44 H 1.09000 * 109.49748 * 181.31733 * 22 21 20 45 45 H 1.09000 * 109.47182 * 66.47855 * 25 23 16 46 46 H 1.09003 * 109.47005 * 186.47263 * 25 23 16 47 47 H 1.08996 * 109.47484 * 306.47549 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1892 1.4427 -1.1868 6 1 3.7031 1.7799 -2.0905 7 6 5.5073 1.0095 -1.2278 8 7 6.0722 0.5170 -0.1458 9 14 6.4795 1.1254 -2.8187 10 1 5.6228 1.7114 -3.8807 11 1 7.6691 1.9896 -2.6099 12 1 6.9197 -0.2319 -3.2298 13 6 4.2380 1.4424 1.2678 14 6 4.4303 0.0231 1.7367 15 8 3.9981 -0.8976 1.0761 16 7 5.0827 -0.2229 2.8901 17 6 5.7202 0.8697 3.6373 18 1 5.4666 1.8243 3.1764 19 6 7.2384 0.6797 3.6283 20 6 5.2021 0.8401 5.0833 21 6 5.4418 -0.5502 5.6766 22 6 4.6678 -1.5927 4.8665 23 6 5.1750 -1.5899 3.4209 24 1 6.2130 -1.9217 3.3973 25 6 4.3168 -2.5291 2.5712 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 6.9932 0.2140 -0.1745 34 1 5.2108 1.9129 1.1253 35 1 3.6715 1.9982 2.0149 36 1 7.5992 0.6855 2.5998 37 1 7.7093 1.4909 4.1835 38 1 7.4881 -0.2728 4.0957 39 1 4.1349 1.0613 5.0946 40 1 5.7349 1.5847 5.6747 41 1 5.0998 -0.5673 6.7114 42 1 6.5065 -0.7809 5.6420 43 1 3.6056 -1.3485 4.8798 44 1 4.8202 -2.5795 5.3036 45 1 4.7423 -2.6046 1.5706 46 1 4.2941 -3.5168 3.0318 47 1 3.3026 -2.1353 2.5060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246780233.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:33 Heat of formation + Delta-G solvation = -23.682243 kcal Electronic energy + Delta-G solvation = -25124.203852 eV Core-core repulsion = 21921.342798 eV Total energy + Delta-G solvation = -3202.861054 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.11553 -38.57606 -37.07057 -34.72265 -34.17484 -33.29050 -32.32418 -30.03678 -28.33963 -27.29542 -27.23681 -24.37083 -23.92613 -22.62850 -21.76243 -21.23575 -19.34056 -18.42882 -17.27932 -17.05727 -16.62571 -15.89438 -15.83576 -15.63415 -15.25205 -14.81509 -14.64099 -14.46964 -14.28114 -13.90585 -13.71319 -13.55612 -13.40051 -13.12815 -12.93665 -12.75242 -12.70092 -12.55840 -12.44958 -12.36160 -12.21283 -12.04228 -11.83760 -11.80466 -11.69375 -11.51856 -11.36272 -11.20576 -11.14650 -10.62322 -9.49737 -8.96760 -8.59321 -7.79176 -5.18611 1.43104 1.46630 1.54302 2.48841 2.50400 2.76460 3.40495 3.70968 3.89229 3.99076 4.04607 4.21158 4.31468 4.37073 4.42885 4.48847 4.55364 4.60587 4.66495 4.70785 4.76843 4.81598 4.82716 4.90862 4.96349 4.99414 5.08988 5.12019 5.17596 5.20782 5.24257 5.28286 5.33083 5.33931 5.38819 5.43740 5.50276 5.58291 5.65095 5.68301 5.82123 6.26340 6.39980 7.07775 7.26248 7.88803 8.23978 8.36056 9.24812 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014484 B = 0.007753 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.755658 B = 3610.606688 C = 4637.366689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.149 3.851 4 N -0.594 5.594 5 C -0.251 4.251 6 H 0.067 0.933 7 C -0.043 4.043 8 N -0.912 5.912 9 Si 0.964 3.036 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.307 1.307 13 C 0.172 3.828 14 C 0.536 3.464 15 O -0.559 6.559 16 N -0.619 5.619 17 C 0.138 3.862 18 H 0.076 0.924 19 C -0.150 4.150 20 C -0.122 4.122 21 C -0.113 4.113 22 C -0.120 4.120 23 C 0.146 3.854 24 H 0.048 0.952 25 C -0.112 4.112 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.018 0.982 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.241 0.759 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.030 0.970 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.082 0.918 45 H 0.034 0.966 46 H 0.049 0.951 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.157 0.902 13.823 14.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.023 3.977 4 N -0.314 5.314 5 C -0.381 4.381 6 H 0.084 0.916 7 C -0.239 4.239 8 N -0.559 5.559 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.235 1.235 13 C 0.042 3.958 14 C 0.326 3.674 15 O -0.436 6.436 16 N -0.356 5.356 17 C 0.034 3.966 18 H 0.094 0.906 19 C -0.208 4.208 20 C -0.160 4.160 21 C -0.150 4.150 22 C -0.158 4.158 23 C 0.042 3.958 24 H 0.066 0.934 25 C -0.169 4.169 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.102 0.898 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.112 0.888 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.101 0.899 45 H 0.053 0.947 46 H 0.068 0.932 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.265 0.416 13.416 13.612 hybrid contribution 0.970 -0.471 -1.460 1.815 sum -1.295 -0.055 11.956 12.026 Atomic orbital electron populations 1.21684 0.94709 1.01219 1.01902 1.21974 0.95290 0.99284 1.00125 1.21043 0.82960 0.94416 0.99279 1.44038 1.00964 1.84592 1.01836 1.19440 0.94879 1.35517 0.88296 0.91567 1.25505 0.99287 0.99493 0.99573 1.69837 1.12238 1.46467 1.27342 0.85247 0.78671 0.75984 0.80676 1.19726 1.21474 1.23531 1.20575 0.97226 0.92039 0.85973 1.21668 0.74840 0.93235 0.77706 1.90510 1.52332 1.46226 1.54579 1.48332 1.56196 1.07225 1.23857 1.21306 0.92794 0.89894 0.92609 0.90579 1.22026 0.95346 1.02435 1.01002 1.21981 1.01341 0.98475 0.94174 1.21511 1.00534 0.93747 0.99200 1.21921 0.99881 1.00553 0.93466 1.21036 0.97987 0.82880 0.93884 0.93429 1.21843 0.99495 0.97056 0.98508 0.91905 0.92435 0.93255 0.96305 0.93749 0.93560 0.92759 0.94909 0.89756 0.93747 0.95080 0.89919 0.92250 0.92178 0.88817 0.89879 0.91320 0.92690 0.89929 0.94680 0.93242 0.94154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.38 9.91 71.98 0.71 -3.66 16 2 C -0.13 -5.43 5.45 30.59 0.17 -5.26 16 3 C 0.15 6.40 5.71 86.38 0.49 6.89 16 4 N -0.59 -30.18 2.12 -706.36 -1.50 -31.68 16 5 C -0.25 -14.00 9.71 84.03 0.82 -13.19 16 6 H 0.07 3.67 7.82 -2.91 -0.02 3.64 16 7 C -0.04 -2.44 5.24 84.86 0.44 -1.99 16 8 N -0.91 -51.88 8.38 21.65 0.18 -51.70 16 9 Si 0.96 46.69 29.56 68.60 2.03 48.72 16 10 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.31 -15.52 7.11 99.48 0.71 -14.82 16 13 C 0.17 8.11 3.80 85.64 0.33 8.43 16 14 C 0.54 25.27 5.38 87.66 0.47 25.75 16 15 O -0.56 -30.23 8.87 -3.05 -0.03 -30.26 16 16 N -0.62 -23.66 2.68 -770.50 -2.06 -25.72 16 17 C 0.14 4.21 3.14 45.12 0.14 4.35 16 18 H 0.08 2.50 5.93 -2.39 -0.01 2.48 16 19 C -0.15 -4.32 9.03 71.98 0.65 -3.67 16 20 C -0.12 -2.71 5.58 30.82 0.17 -2.53 16 21 C -0.11 -2.28 5.68 30.62 0.17 -2.11 16 22 C -0.12 -3.01 5.38 30.68 0.16 -2.85 16 23 C 0.15 5.01 3.07 44.97 0.14 5.15 16 24 H 0.05 1.67 7.48 -2.39 -0.02 1.65 16 25 C -0.11 -4.38 7.62 71.98 0.55 -3.84 16 26 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.04 2.10 6.08 -2.39 -0.01 2.09 16 31 H 0.05 1.93 8.03 -2.39 -0.02 1.91 16 32 H 0.05 2.06 7.92 -2.39 -0.02 2.05 16 33 H 0.24 13.79 8.31 -92.71 -0.77 13.02 16 34 H 0.08 4.34 5.94 -2.39 -0.01 4.33 16 35 H 0.04 1.85 7.71 -2.39 -0.02 1.84 16 36 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.06 1.59 5.71 -2.39 -0.01 1.58 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.07 1.35 6.49 -2.39 -0.02 1.33 16 43 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.03 1.68 6.61 -2.39 -0.02 1.66 16 46 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 47 H 0.04 1.72 6.89 -2.39 -0.02 1.70 16 Total: -1.00 -66.83 346.24 4.96 -61.87 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.92 Total: 17.29 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 5.42 Total: 11.47 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -3.38 Total: -109.09 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.03 Total: -30.26 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -66.83 4.96 -61.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246780233.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.191 kcal (2) G-P(sol) polarization free energy of solvation -66.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds