Wall clock time and date at job start Tue Mar 31 2020 05:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47405 * 2 1 4 4 H 1.08997 * 109.58413 * 60.13909 * 3 2 1 5 5 C 1.53195 * 109.58252 * 299.86192 * 3 2 1 6 6 C 1.53042 * 109.30879 * 185.58018 * 5 3 2 7 7 C 1.53041 * 109.54212 * 61.36278 * 6 5 3 8 8 C 1.53187 * 109.31115 * 298.63582 * 7 6 5 9 9 N 1.46925 * 109.58908 * 180.42987 * 3 2 1 10 10 C 1.34780 * 120.62572 * 353.39207 * 9 3 2 11 11 O 1.21273 * 120.00360 * 5.44155 * 10 9 3 12 12 C 1.50700 * 119.99553 * 185.43392 * 10 9 3 13 13 N 1.46905 * 109.46867 * 180.02562 * 12 10 9 14 14 C 1.46901 * 111.00088 * 293.95438 * 13 12 10 15 15 C 1.46900 * 110.99824 * 169.99886 * 13 12 10 16 16 H 1.09003 * 109.47110 * 60.00463 * 15 13 12 17 17 C 1.53003 * 109.47472 * 300.00236 * 15 13 12 18 18 C 1.50705 * 109.47354 * 179.97438 * 15 13 12 19 19 H 1.08002 * 119.99596 * 0.02562 * 18 15 13 20 20 C 1.37871 * 120.00293 * 180.02562 * 18 15 13 21 21 N 1.31520 * 120.00140 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 119.99866 * 180.02562 * 20 18 15 23 23 H 1.48495 * 109.47253 * 60.00297 * 22 20 18 24 24 H 1.48505 * 109.46873 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47248 * 299.99521 * 22 20 18 26 26 H 1.09003 * 109.47446 * 175.08420 * 1 2 3 27 27 H 1.08995 * 109.47341 * 295.09005 * 1 2 3 28 28 H 1.09003 * 109.47084 * 55.08282 * 1 2 3 29 29 H 1.09004 * 109.46853 * 120.00072 * 2 1 3 30 30 H 1.09000 * 109.47140 * 239.99576 * 2 1 3 31 31 H 1.09004 * 109.49937 * 305.52509 * 5 3 2 32 32 H 1.08991 * 109.49982 * 65.59272 * 5 3 2 33 33 H 1.09001 * 109.45772 * 181.38467 * 6 5 3 34 34 H 1.09000 * 109.45810 * 301.35229 * 6 5 3 35 35 H 1.09000 * 109.49399 * 58.58811 * 7 6 5 36 36 H 1.08997 * 109.49666 * 178.68124 * 7 6 5 37 37 H 1.09005 * 109.58790 * 174.42092 * 8 7 6 38 38 H 1.08998 * 109.58669 * 294.70537 * 8 7 6 39 39 H 1.09002 * 109.47477 * 300.00306 * 12 10 9 40 40 H 1.09001 * 109.47465 * 60.00616 * 12 10 9 41 41 H 1.08999 * 109.46740 * 59.99919 * 14 13 12 42 42 H 1.08996 * 109.46774 * 179.97438 * 14 13 12 43 43 H 1.09001 * 109.46934 * 299.99935 * 14 13 12 44 44 H 1.09000 * 109.46686 * 179.97438 * 17 15 13 45 45 H 1.08999 * 109.46718 * 299.99954 * 17 15 13 46 46 H 1.08995 * 109.46658 * 59.99771 * 17 15 13 47 47 H 0.96997 * 120.00126 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6798 1.9574 0.8906 5 6 1.5337 2.1661 -1.2517 6 6 2.1589 3.5615 -1.3173 7 6 3.6811 3.4363 -1.4142 8 6 4.2117 2.7270 -0.1644 9 7 3.5093 1.4454 -0.0104 10 6 4.1991 0.2944 0.1153 11 8 3.6107 -0.7657 0.1392 12 6 5.7017 0.3248 0.2260 13 7 6.2113 -1.0472 0.3518 14 6 5.7799 -1.6551 1.6176 15 6 7.6744 -1.0792 0.2241 16 1 8.1209 -0.4673 1.0080 17 6 8.0791 -0.5291 -1.1450 18 6 8.1596 -2.4996 0.3588 19 1 7.4517 -3.2987 0.5224 20 6 9.5070 -2.7789 0.2732 21 7 10.3690 -1.8057 0.0744 22 14 10.1082 -4.5397 0.4394 23 1 9.5005 -5.3732 -0.6288 24 1 11.5874 -4.5718 0.3117 25 1 9.7150 -5.0737 1.7680 26 1 -0.3634 -1.0239 -0.0881 27 1 -0.3634 0.4357 0.9306 28 1 -0.3633 0.5882 -0.8427 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8157 1.5991 -2.1389 32 1 0.4483 2.2550 -1.2065 33 1 1.7813 4.0877 -2.1939 34 1 1.8971 4.1193 -0.4182 35 1 3.9428 2.8573 -2.2999 36 1 4.1241 4.4297 -1.4845 37 1 5.2813 2.5469 -0.2728 38 1 4.0330 3.3493 0.7125 39 1 6.1225 0.7880 -0.6665 40 1 5.9898 0.9017 1.1048 41 1 4.6909 -1.6819 1.6552 42 1 6.1705 -2.6704 1.6847 43 1 6.1578 -1.0641 2.4519 44 1 9.1648 -0.5524 -1.2394 45 1 7.6326 -1.1410 -1.9288 46 1 7.7282 0.4983 -1.2419 47 1 11.3170 -2.0022 0.0146 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247729541.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:31 Heat of formation + Delta-G solvation = -19.623590 kcal Electronic energy + Delta-G solvation = -23872.439873 eV Core-core repulsion = 20669.754815 eV Total energy + Delta-G solvation = -3202.685058 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.42860 -37.66622 -36.23450 -34.24133 -32.81049 -32.62842 -29.48193 -29.20113 -28.05318 -25.38928 -24.51803 -24.18202 -23.24040 -21.22482 -20.98916 -19.52737 -18.58731 -16.70554 -16.15396 -15.85014 -15.60181 -14.88077 -14.59820 -14.54359 -14.12098 -13.90568 -13.66012 -13.51873 -13.17558 -13.05045 -12.73058 -12.46343 -12.21770 -12.02147 -11.73875 -11.57707 -11.28482 -11.07218 -11.05550 -10.93283 -10.78966 -10.74122 -10.64296 -10.54214 -10.45680 -10.13718 -10.00296 -9.88662 -8.91049 -8.55348 -8.39269 -8.37109 -7.10582 -5.99226 -4.02702 3.02479 3.10391 3.35634 3.38980 3.43354 4.43083 4.53782 4.65396 4.69708 4.89097 4.99411 5.13831 5.18601 5.22289 5.28801 5.34030 5.40528 5.49275 5.58866 5.59985 5.71377 5.77853 5.79897 5.84310 5.89567 5.90309 5.93973 6.13925 6.16009 6.36825 6.43849 6.48722 6.56196 6.79904 6.86305 6.96266 7.03489 7.16786 7.49048 7.59963 7.74475 7.86315 8.21527 8.34056 8.56807 8.67744 9.03881 9.62011 11.07925 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027193 B = 0.004124 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.443287 B = 6788.058193 C = 7516.438284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.111 4.111 3 C 0.149 3.851 4 H 0.064 0.936 5 C -0.133 4.133 6 C -0.119 4.119 7 C -0.136 4.136 8 C 0.108 3.892 9 N -0.620 5.620 10 C 0.518 3.482 11 O -0.510 6.510 12 C 0.032 3.968 13 N -0.519 5.519 14 C 0.034 3.966 15 C 0.212 3.788 16 H -0.002 1.002 17 C -0.134 4.134 18 C -0.501 4.501 19 H 0.064 0.936 20 C 0.059 3.941 21 N -0.896 5.896 22 Si 0.898 3.102 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.278 1.278 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.047 0.953 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.002 0.998 44 H 0.087 0.913 45 H 0.036 0.964 46 H 0.005 0.995 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.668 12.474 -1.058 20.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.148 4.148 3 C 0.046 3.954 4 H 0.082 0.918 5 C -0.171 4.171 6 C -0.156 4.156 7 C -0.174 4.174 8 C -0.015 4.015 9 N -0.356 5.356 10 C 0.306 3.694 11 O -0.385 6.385 12 C -0.099 4.099 13 N -0.244 5.244 14 C -0.115 4.115 15 C 0.106 3.894 16 H 0.016 0.984 17 C -0.192 4.192 18 C -0.539 4.539 19 H 0.083 0.917 20 C -0.142 4.142 21 N -0.535 5.535 22 Si 0.726 3.274 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.203 1.203 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.021 0.979 44 H 0.105 0.895 45 H 0.055 0.945 46 H 0.024 0.976 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.946 11.616 -1.440 19.781 hybrid contribution 0.817 -0.163 0.679 1.075 sum -15.129 11.453 -0.761 18.990 Atomic orbital electron populations 1.22024 0.97373 1.01532 1.00947 1.22057 0.93175 0.94187 1.05416 1.21245 0.79410 0.97677 0.97041 0.91823 1.22057 1.00257 0.96066 0.98747 1.21512 0.95342 0.96949 1.01843 1.21923 0.96129 1.00791 0.98592 1.21698 0.97430 0.84741 0.97668 1.48245 1.06014 1.06958 1.74417 1.20968 0.90217 0.82913 0.75258 1.90671 1.69571 1.30098 1.48132 1.22090 0.91070 0.94628 1.02132 1.61876 1.14717 1.13249 1.34531 1.22353 0.99924 1.00547 0.88636 1.19293 0.79762 0.96871 0.93442 0.98427 1.21873 1.03905 0.95046 0.98332 1.21114 0.91779 0.92468 1.48560 0.91748 1.24917 0.96731 0.97292 0.95283 1.69878 1.02160 1.31291 1.50175 0.86561 0.77323 0.84853 0.78691 1.20184 1.21396 1.20334 0.92711 0.93409 0.93042 0.89689 0.90460 0.91439 0.90884 0.91882 0.91981 0.91275 0.90790 0.89420 0.91704 0.88234 0.93556 0.91903 0.90568 0.97939 0.89486 0.94525 0.97573 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.70 37.16 0.36 -1.32 16 2 C -0.11 -1.48 3.86 -26.73 -0.10 -1.59 16 3 C 0.15 1.76 3.01 -67.60 -0.20 1.56 16 4 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 5 C -0.13 -1.29 4.86 -26.61 -0.13 -1.42 16 6 C -0.12 -0.98 5.88 -26.69 -0.16 -1.13 16 7 C -0.14 -1.20 6.08 -26.61 -0.16 -1.36 16 8 C 0.11 1.13 6.32 -3.70 -0.02 1.11 16 9 N -0.62 -8.28 2.98 -165.20 -0.49 -8.78 16 10 C 0.52 8.90 7.33 -10.98 -0.08 8.82 16 11 O -0.51 -10.09 9.71 5.56 0.05 -10.03 16 12 C 0.03 0.60 3.68 -4.97 -0.02 0.58 16 13 N -0.52 -11.80 4.36 -237.72 -1.04 -12.83 16 14 C 0.03 0.73 8.93 60.07 0.54 1.27 16 15 C 0.21 5.42 2.06 -68.86 -0.14 5.28 16 16 H 0.00 -0.05 8.14 -51.93 -0.42 -0.47 16 17 C -0.13 -3.24 8.77 37.16 0.33 -2.92 16 18 C -0.50 -13.97 7.88 -34.44 -0.27 -14.24 16 19 H 0.06 1.82 6.40 -52.49 -0.34 1.48 16 20 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 21 N -0.90 -25.51 11.32 55.43 0.63 -24.88 16 22 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.47 6.32 -51.93 -0.33 0.14 16 29 H 0.08 1.35 6.48 -51.93 -0.34 1.01 16 30 H 0.08 1.23 7.01 -51.93 -0.36 0.86 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.61 6.65 -51.93 -0.35 0.26 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.94 5.97 -51.93 -0.31 0.63 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 1.76 5.14 -51.93 -0.27 1.50 16 40 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 41 H 0.06 1.31 5.88 -51.93 -0.31 1.01 16 42 H 0.08 1.76 6.10 -51.93 -0.32 1.44 16 43 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 44 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 45 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.01 0.12 6.20 -51.93 -0.32 -0.21 16 47 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 345.24 15.07 5.20 5.20 Total: -1.00 -30.17 345.24 -9.00 -39.17 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -8.18 Total: -0.62 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -0.16 Total: -3.84 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.90 Total: -46.49 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.05 Total: -10.03 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.17 -9.00 -39.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247729541.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.547 kcal (2) G-P(sol) polarization free energy of solvation -30.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds