Wall clock time and date at job start Tue Mar 31 2020 05:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47399 * 2 1 4 4 H 1.09005 * 109.58703 * 301.50042 * 3 2 1 5 5 C 1.53191 * 109.70305 * 61.85583 * 3 2 1 6 6 C 1.53044 * 109.31275 * 174.49085 * 5 3 2 7 7 C 1.53040 * 109.54101 * 298.63755 * 6 5 3 8 8 C 1.52761 * 109.38201 * 61.23910 * 7 6 5 9 9 N 1.46927 * 109.58826 * 181.21928 * 3 2 1 10 10 C 1.34767 * 120.63028 * 6.43837 * 9 3 2 11 11 O 1.21283 * 120.00233 * 354.86714 * 10 9 3 12 12 C 1.50704 * 120.00363 * 174.87177 * 10 9 3 13 13 N 1.46896 * 109.47327 * 180.02562 * 12 10 9 14 14 C 1.46900 * 110.99800 * 293.94714 * 13 12 10 15 15 C 1.46907 * 110.99859 * 169.99984 * 13 12 10 16 16 H 1.08996 * 109.47282 * 59.99662 * 15 13 12 17 17 C 1.53007 * 109.46906 * 299.99751 * 15 13 12 18 18 C 1.50696 * 109.47000 * 179.97438 * 15 13 12 19 19 H 1.08001 * 119.99944 * 359.97438 * 18 15 13 20 20 C 1.37874 * 120.00059 * 179.97438 * 18 15 13 21 21 N 1.31521 * 120.00033 * 359.97438 * 20 18 15 22 22 Si 1.86797 * 120.00355 * 179.97438 * 20 18 15 23 23 H 1.48504 * 109.47189 * 60.00064 * 22 20 18 24 24 H 1.48503 * 109.47413 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47192 * 300.00180 * 22 20 18 26 26 H 1.09009 * 109.46445 * 294.06053 * 1 2 3 27 27 H 1.08997 * 109.47311 * 54.05302 * 1 2 3 28 28 H 1.08992 * 109.47343 * 174.06438 * 1 2 3 29 29 H 1.09000 * 109.46758 * 240.00473 * 2 1 3 30 30 H 1.08995 * 109.47141 * 120.00474 * 2 1 3 31 31 H 1.09002 * 109.50092 * 294.44340 * 5 3 2 32 32 H 1.09004 * 109.49963 * 54.51389 * 5 3 2 33 33 H 1.08995 * 109.45874 * 58.66262 * 6 5 3 34 34 H 1.09002 * 109.45678 * 178.63006 * 6 5 3 35 35 H 1.08997 * 109.49837 * 181.31911 * 7 6 5 36 36 H 1.09001 * 109.49577 * 301.37800 * 7 6 5 37 37 H 1.09002 * 109.50815 * 185.70787 * 8 7 6 38 38 H 1.08998 * 109.43097 * 65.42238 * 8 7 6 39 39 H 1.09003 * 109.46512 * 300.00199 * 12 10 9 40 40 H 1.08997 * 109.47087 * 59.99499 * 12 10 9 41 41 H 1.08998 * 109.46810 * 60.00784 * 14 13 12 42 42 H 1.09000 * 109.47090 * 180.02562 * 14 13 12 43 43 H 1.08998 * 109.47473 * 300.00522 * 14 13 12 44 44 H 1.09003 * 109.46784 * 300.00290 * 17 15 13 45 45 H 1.09004 * 109.46973 * 59.99993 * 17 15 13 46 46 H 1.08999 * 109.46681 * 180.02562 * 17 15 13 47 47 H 0.96990 * 120.00331 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6560 1.9658 -0.8756 5 6 1.5709 2.1561 1.2717 6 6 2.1979 3.5510 1.3299 7 6 3.7223 3.4253 1.3810 8 6 4.2159 2.7253 0.1161 9 7 3.5090 1.4454 -0.0295 10 6 4.1951 0.2955 -0.1814 11 8 3.6056 -0.7642 -0.2021 12 6 5.6949 0.3262 -0.3257 13 7 6.2005 -1.0447 -0.4770 14 6 5.9834 -1.8241 0.7491 15 6 7.6200 -1.0435 -0.8556 16 1 8.2015 -0.5397 -0.0836 17 6 7.7924 -0.3074 -2.1858 18 6 8.1024 -2.4637 -1.0006 19 1 7.4226 -3.2851 -0.8284 20 6 9.4114 -2.7146 -1.3532 21 7 10.2391 -1.7143 -1.5635 22 14 10.0096 -4.4751 -1.5323 23 1 9.2170 -5.1628 -2.5832 24 1 11.4441 -4.4739 -1.9163 25 1 9.8431 -5.1884 -0.2405 26 1 -0.3632 0.4190 0.9385 27 1 -0.3634 0.6033 -0.8319 28 1 -0.3633 -1.0221 -0.1063 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.4846 2.2458 1.2589 32 1 1.8783 1.5819 2.1457 33 1 1.9096 4.1160 0.4435 34 1 1.8464 4.0702 2.2216 35 1 4.1672 4.4182 1.4460 36 1 4.0099 2.8399 2.2543 37 1 5.2878 2.5438 0.1953 38 1 4.0128 3.3554 -0.7498 39 1 5.9633 0.9113 -1.2054 40 1 6.1360 0.7808 0.5613 41 1 4.9165 -1.8673 0.9679 42 1 6.3673 -2.8347 0.6099 43 1 6.5057 -1.3486 1.5792 44 1 7.2108 -0.8112 -2.9579 45 1 7.4435 0.7200 -2.0805 46 1 8.8455 -0.3069 -2.4669 47 1 11.1599 -1.8907 -1.8119 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247729544.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:35 Heat of formation + Delta-G solvation = -19.801271 kcal Electronic energy + Delta-G solvation = -23865.049005 eV Core-core repulsion = 20662.356243 eV Total energy + Delta-G solvation = -3202.692763 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.43807 -37.67115 -36.24277 -34.23863 -32.82045 -32.62758 -29.52705 -29.19840 -28.04859 -25.39018 -24.52224 -24.16232 -23.24138 -21.24537 -20.98990 -19.51725 -18.61296 -16.70627 -16.23186 -15.81287 -15.43321 -14.97235 -14.71473 -14.58013 -14.11645 -13.86700 -13.64139 -13.48409 -13.20258 -13.01788 -12.73722 -12.42563 -12.22469 -12.04558 -11.74040 -11.63767 -11.23660 -11.12590 -11.05651 -10.94397 -10.84734 -10.70164 -10.60150 -10.54091 -10.51976 -10.13290 -9.99058 -9.88704 -8.90440 -8.59357 -8.39524 -8.33395 -7.10266 -5.99160 -4.02675 3.02783 3.09870 3.35606 3.39013 3.43354 4.43100 4.53589 4.63894 4.68231 4.88669 4.98725 5.13885 5.17059 5.22157 5.29595 5.33964 5.39851 5.47328 5.59549 5.60997 5.71246 5.75375 5.78113 5.84103 5.88263 5.90330 5.93133 6.13357 6.14278 6.37127 6.44094 6.47914 6.56340 6.80634 6.86702 6.96286 7.03873 7.16903 7.49201 7.60009 7.74631 7.86371 8.21746 8.34163 8.56877 8.67817 9.03912 9.62023 11.07963 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027872 B = 0.004062 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.368375 B = 6891.034276 C = 7512.013946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.112 4.112 3 C 0.149 3.851 4 H 0.065 0.935 5 C -0.132 4.132 6 C -0.119 4.119 7 C -0.136 4.136 8 C 0.107 3.893 9 N -0.620 5.620 10 C 0.517 3.483 11 O -0.510 6.510 12 C 0.033 3.967 13 N -0.519 5.519 14 C 0.034 3.966 15 C 0.212 3.788 16 H -0.002 1.002 17 C -0.134 4.134 18 C -0.501 4.501 19 H 0.064 0.936 20 C 0.059 3.941 21 N -0.896 5.896 22 Si 0.898 3.102 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.278 1.278 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.046 0.954 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.002 0.998 44 H 0.036 0.964 45 H 0.006 0.994 46 H 0.087 0.913 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.267 12.197 5.077 20.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.150 4.150 3 C 0.046 3.954 4 H 0.083 0.917 5 C -0.170 4.170 6 C -0.157 4.157 7 C -0.174 4.174 8 C -0.016 4.016 9 N -0.356 5.356 10 C 0.306 3.694 11 O -0.385 6.385 12 C -0.099 4.099 13 N -0.244 5.244 14 C -0.114 4.114 15 C 0.106 3.894 16 H 0.016 0.984 17 C -0.192 4.192 18 C -0.539 4.539 19 H 0.083 0.917 20 C -0.142 4.142 21 N -0.535 5.535 22 Si 0.726 3.274 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.203 1.203 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.020 0.980 44 H 0.055 0.945 45 H 0.025 0.975 46 H 0.105 0.895 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.618 11.398 4.622 19.880 hybrid contribution 0.922 -0.244 0.573 1.112 sum -14.697 11.154 5.195 19.167 Atomic orbital electron populations 1.21991 0.97362 1.01488 1.00859 1.22085 0.93196 0.94190 1.05489 1.21278 0.79456 0.97703 0.96937 0.91698 1.22042 1.00382 0.96076 0.98541 1.21512 0.95272 0.96978 1.01895 1.21849 0.96276 1.00825 0.98475 1.21619 0.97455 0.84878 0.97636 1.48237 1.06069 1.07088 1.74210 1.20965 0.90255 0.82937 0.75200 1.90667 1.69316 1.30150 1.48364 1.22095 0.90887 0.95240 1.01666 1.61876 1.21747 1.07810 1.32923 1.22351 1.00171 0.99577 0.89342 1.19293 0.80481 0.96724 0.92861 0.98441 1.21878 1.03594 0.94740 0.98976 1.21113 0.95029 0.91540 1.46245 0.91747 1.24918 0.96686 0.97236 0.95384 1.69875 1.05256 1.30392 1.47980 0.86563 0.77442 0.84815 0.78608 1.20184 1.21396 1.20333 0.93294 0.93313 0.92707 0.89123 0.90879 0.90945 0.91597 0.91891 0.91915 0.90764 0.91506 0.89428 0.91566 0.88178 0.93626 0.91899 0.90569 0.97977 0.94522 0.97536 0.89477 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.44 37.16 0.35 -1.32 16 2 C -0.11 -1.50 3.85 -26.73 -0.10 -1.60 16 3 C 0.15 1.76 2.99 -67.60 -0.20 1.56 16 4 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 5 C -0.13 -1.26 4.91 -26.61 -0.13 -1.39 16 6 C -0.12 -0.97 5.89 -26.69 -0.16 -1.12 16 7 C -0.14 -1.18 6.06 -26.83 -0.16 -1.34 16 8 C 0.11 1.12 6.30 -3.93 -0.02 1.10 16 9 N -0.62 -8.27 2.98 -165.48 -0.49 -8.76 16 10 C 0.52 8.89 7.33 -10.99 -0.08 8.81 16 11 O -0.51 -10.08 9.71 5.55 0.05 -10.02 16 12 C 0.03 0.60 3.67 -4.98 -0.02 0.58 16 13 N -0.52 -11.79 4.36 -237.73 -1.04 -12.82 16 14 C 0.03 0.74 8.93 60.06 0.54 1.27 16 15 C 0.21 5.43 2.06 -68.86 -0.14 5.28 16 16 H 0.00 -0.05 8.14 -51.93 -0.42 -0.48 16 17 C -0.13 -3.26 8.77 37.16 0.33 -2.93 16 18 C -0.50 -13.97 7.88 -34.44 -0.27 -14.24 16 19 H 0.06 1.82 6.40 -52.49 -0.34 1.48 16 20 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 21 N -0.90 -25.51 11.32 55.43 0.63 -24.89 16 22 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H 0.05 0.45 6.95 -51.92 -0.36 0.09 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.09 1.48 6.35 -51.93 -0.33 1.15 16 30 H 0.07 1.13 7.12 -51.93 -0.37 0.76 16 31 H 0.07 0.60 6.94 -51.93 -0.36 0.24 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.93 5.96 -51.93 -0.31 0.62 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.10 1.78 5.80 -51.93 -0.30 1.48 16 40 H 0.05 0.80 7.44 -51.93 -0.39 0.41 16 41 H 0.06 1.32 5.88 -51.93 -0.31 1.01 16 42 H 0.08 1.76 6.10 -51.93 -0.32 1.44 16 43 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 44 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.01 0.12 6.20 -51.93 -0.32 -0.20 16 46 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 47 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 345.85 15.07 5.21 5.21 Total: -1.00 -30.14 345.85 -9.05 -39.19 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -8.22 Total: -0.70 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -0.17 Total: -3.81 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -0.90 Total: -46.47 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.05 Total: -10.02 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.14 -9.05 -39.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247729544.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.387 kcal (2) G-P(sol) polarization free energy of solvation -30.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds