Wall clock time and date at job start Tue Mar 31 2020 05:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47399 * 2 1 4 4 H 1.09005 * 109.58703 * 301.50042 * 3 2 1 5 5 C 1.53191 * 109.70305 * 61.85583 * 3 2 1 6 6 C 1.53044 * 109.31275 * 174.49085 * 5 3 2 7 7 C 1.53040 * 109.54101 * 298.63755 * 6 5 3 8 8 C 1.52761 * 109.38201 * 61.23910 * 7 6 5 9 9 N 1.46927 * 109.58826 * 181.21928 * 3 2 1 10 10 C 1.34767 * 120.63028 * 6.43837 * 9 3 2 11 11 O 1.21283 * 120.00233 * 354.86714 * 10 9 3 12 12 C 1.50704 * 120.00363 * 174.87177 * 10 9 3 13 13 N 1.46896 * 109.47327 * 180.02562 * 12 10 9 14 14 C 1.46900 * 110.99800 * 293.94714 * 13 12 10 15 15 C 1.46907 * 110.99859 * 169.99984 * 13 12 10 16 16 H 1.08996 * 109.47282 * 59.99662 * 15 13 12 17 17 C 1.53007 * 109.46906 * 299.99751 * 15 13 12 18 18 C 1.50696 * 109.47000 * 179.97438 * 15 13 12 19 19 H 1.08001 * 119.99944 * 359.97438 * 18 15 13 20 20 C 1.37874 * 120.00059 * 179.97438 * 18 15 13 21 21 N 1.31521 * 120.00033 * 359.97438 * 20 18 15 22 22 Si 1.86797 * 120.00355 * 179.97438 * 20 18 15 23 23 H 1.48504 * 109.47189 * 60.00064 * 22 20 18 24 24 H 1.48503 * 109.47413 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47192 * 300.00180 * 22 20 18 26 26 H 1.09009 * 109.46445 * 294.06053 * 1 2 3 27 27 H 1.08997 * 109.47311 * 54.05302 * 1 2 3 28 28 H 1.08992 * 109.47343 * 174.06438 * 1 2 3 29 29 H 1.09000 * 109.46758 * 240.00473 * 2 1 3 30 30 H 1.08995 * 109.47141 * 120.00474 * 2 1 3 31 31 H 1.09002 * 109.50092 * 294.44340 * 5 3 2 32 32 H 1.09004 * 109.49963 * 54.51389 * 5 3 2 33 33 H 1.08995 * 109.45874 * 58.66262 * 6 5 3 34 34 H 1.09002 * 109.45678 * 178.63006 * 6 5 3 35 35 H 1.08997 * 109.49837 * 181.31911 * 7 6 5 36 36 H 1.09001 * 109.49577 * 301.37800 * 7 6 5 37 37 H 1.09002 * 109.50815 * 185.70787 * 8 7 6 38 38 H 1.08998 * 109.43097 * 65.42238 * 8 7 6 39 39 H 1.09003 * 109.46512 * 300.00199 * 12 10 9 40 40 H 1.08997 * 109.47087 * 59.99499 * 12 10 9 41 41 H 1.08998 * 109.46810 * 60.00784 * 14 13 12 42 42 H 1.09000 * 109.47090 * 180.02562 * 14 13 12 43 43 H 1.08998 * 109.47473 * 300.00522 * 14 13 12 44 44 H 1.09003 * 109.46784 * 300.00290 * 17 15 13 45 45 H 1.09004 * 109.46973 * 59.99993 * 17 15 13 46 46 H 1.08999 * 109.46681 * 180.02562 * 17 15 13 47 47 H 0.96990 * 120.00331 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6560 1.9658 -0.8756 5 6 1.5709 2.1561 1.2717 6 6 2.1979 3.5510 1.3299 7 6 3.7223 3.4253 1.3810 8 6 4.2159 2.7253 0.1161 9 7 3.5090 1.4454 -0.0295 10 6 4.1951 0.2955 -0.1814 11 8 3.6056 -0.7642 -0.2021 12 6 5.6949 0.3262 -0.3257 13 7 6.2005 -1.0447 -0.4770 14 6 5.9834 -1.8241 0.7491 15 6 7.6200 -1.0435 -0.8556 16 1 8.2015 -0.5397 -0.0836 17 6 7.7924 -0.3074 -2.1858 18 6 8.1024 -2.4637 -1.0006 19 1 7.4226 -3.2851 -0.8284 20 6 9.4114 -2.7146 -1.3532 21 7 10.2391 -1.7143 -1.5635 22 14 10.0096 -4.4751 -1.5323 23 1 9.2170 -5.1628 -2.5832 24 1 11.4441 -4.4739 -1.9163 25 1 9.8431 -5.1884 -0.2405 26 1 -0.3632 0.4190 0.9385 27 1 -0.3634 0.6033 -0.8319 28 1 -0.3633 -1.0221 -0.1063 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.4846 2.2458 1.2589 32 1 1.8783 1.5819 2.1457 33 1 1.9096 4.1160 0.4435 34 1 1.8464 4.0702 2.2216 35 1 4.1672 4.4182 1.4460 36 1 4.0099 2.8399 2.2543 37 1 5.2878 2.5438 0.1953 38 1 4.0128 3.3554 -0.7498 39 1 5.9633 0.9113 -1.2054 40 1 6.1360 0.7808 0.5613 41 1 4.9165 -1.8673 0.9679 42 1 6.3673 -2.8347 0.6099 43 1 6.5057 -1.3486 1.5792 44 1 7.2108 -0.8112 -2.9579 45 1 7.4435 0.7200 -2.0805 46 1 8.8455 -0.3069 -2.4669 47 1 11.1599 -1.8907 -1.8119 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247729544.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:34 Heat of formation + Delta-G solvation = -37.970262 kcal Electronic energy + Delta-G solvation = -23865.836872 eV Core-core repulsion = 20662.356243 eV Total energy + Delta-G solvation = -3203.480629 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.60814 -39.01816 -37.78968 -35.31213 -34.58939 -33.77960 -31.18303 -30.36661 -29.60337 -27.07972 -25.98213 -25.19483 -24.75957 -22.40051 -21.91878 -21.16393 -19.85691 -18.40453 -17.84793 -17.01518 -16.80108 -16.61210 -15.88445 -15.62139 -15.38622 -15.35287 -15.06617 -14.54769 -14.40560 -14.32043 -14.09399 -13.81829 -13.55581 -13.31081 -13.08100 -12.93517 -12.80561 -12.64384 -12.57675 -12.45489 -12.13581 -12.03444 -11.98943 -11.89553 -11.73079 -11.66982 -11.45325 -11.36514 -10.93122 -10.51611 -9.91096 -9.45438 -8.90067 -8.11966 -6.22666 1.42145 1.44040 1.51627 1.70141 1.98607 2.43131 3.15980 3.35835 3.60834 3.86756 3.88431 4.02236 4.12703 4.27518 4.31041 4.31684 4.38011 4.44916 4.56327 4.58585 4.66371 4.68492 4.74717 4.88092 4.89988 4.92154 4.99086 5.00693 5.08245 5.10717 5.15329 5.21884 5.23826 5.29163 5.36531 5.47259 5.48976 5.51507 5.71154 5.75510 5.83225 6.24299 6.35694 6.42757 6.71080 6.89697 7.35027 7.45883 8.93934 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027872 B = 0.004062 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.368375 B = 6891.034276 C = 7512.013946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.106 4.106 3 C 0.145 3.855 4 H 0.081 0.919 5 C -0.126 4.126 6 C -0.116 4.116 7 C -0.132 4.132 8 C 0.098 3.902 9 N -0.612 5.612 10 C 0.515 3.485 11 O -0.545 6.545 12 C 0.034 3.966 13 N -0.533 5.533 14 C 0.045 3.955 15 C 0.217 3.783 16 H -0.029 1.029 17 C -0.121 4.121 18 C -0.523 4.523 19 H 0.053 0.947 20 C 0.016 3.984 21 N -0.917 5.917 22 Si 0.958 3.042 23 H -0.275 1.275 24 H -0.280 1.280 25 H -0.273 1.273 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.052 0.948 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.005 0.995 44 H 0.026 0.974 45 H 0.037 0.963 46 H 0.064 0.936 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.578 14.060 5.288 22.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C 0.043 3.957 4 H 0.099 0.901 5 C -0.164 4.164 6 C -0.153 4.153 7 C -0.170 4.170 8 C -0.024 4.024 9 N -0.347 5.347 10 C 0.304 3.696 11 O -0.423 6.423 12 C -0.097 4.097 13 N -0.258 5.258 14 C -0.103 4.103 15 C 0.111 3.889 16 H -0.012 1.012 17 C -0.179 4.179 18 C -0.561 4.561 19 H 0.071 0.929 20 C -0.183 4.183 21 N -0.556 5.556 22 Si 0.783 3.217 23 H -0.200 1.200 24 H -0.205 1.205 25 H -0.199 1.199 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.125 0.875 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.024 0.976 44 H 0.045 0.955 45 H 0.056 0.944 46 H 0.083 0.917 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.950 13.312 4.845 22.090 hybrid contribution 1.283 -0.756 0.521 1.578 sum -15.667 12.556 5.366 20.782 Atomic orbital electron populations 1.21912 0.94877 1.01738 1.02376 1.21855 0.95274 0.94816 1.02411 1.21459 0.78262 0.96972 0.98996 0.90138 1.22000 1.01631 0.96532 0.96253 1.21521 0.94426 0.96008 1.03346 1.21842 0.97055 1.01481 0.96657 1.21911 0.97096 0.83736 0.99635 1.48261 1.06992 1.06986 1.72458 1.20710 0.89669 0.83682 0.75574 1.90679 1.69643 1.31672 1.50290 1.22115 0.92185 0.92874 1.02485 1.61761 1.19897 1.10582 1.33584 1.22203 1.00375 0.98481 0.89244 1.19103 0.81743 0.95478 0.92603 1.01174 1.21682 1.01992 0.96408 0.97853 1.21361 0.95433 0.92515 1.46783 0.92883 1.25636 0.96738 1.01000 0.94957 1.69980 1.05462 1.32043 1.48157 0.85618 0.77144 0.80310 0.78588 1.20030 1.20512 1.19858 0.91590 0.91819 0.93227 0.92619 0.93663 0.89011 0.93192 0.90505 0.90347 0.88420 0.92891 0.89895 0.89485 0.87495 0.92438 0.91234 0.92531 0.97649 0.95459 0.94385 0.91686 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.44 71.98 0.68 -2.27 16 2 C -0.11 -2.83 3.85 30.59 0.12 -2.71 16 3 C 0.15 3.18 2.99 44.97 0.13 3.32 16 4 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 5 C -0.13 -2.07 4.91 30.67 0.15 -1.92 16 6 C -0.12 -1.44 5.89 30.62 0.18 -1.26 16 7 C -0.13 -1.90 6.06 30.53 0.19 -1.71 16 8 C 0.10 1.81 6.30 86.22 0.54 2.35 16 9 N -0.61 -15.59 2.98 -795.85 -2.37 -17.96 16 10 C 0.52 17.72 7.33 87.66 0.64 18.37 16 11 O -0.54 -22.18 9.71 -3.04 -0.03 -22.21 16 12 C 0.03 1.27 3.67 85.56 0.31 1.58 16 13 N -0.53 -24.72 4.36 -906.03 -3.95 -28.67 16 14 C 0.05 2.03 8.93 127.69 1.14 3.17 16 15 C 0.22 11.35 2.06 44.17 0.09 11.44 16 16 H -0.03 -1.65 8.14 -2.39 -0.02 -1.67 16 17 C -0.12 -5.94 8.77 71.98 0.63 -5.31 16 18 C -0.52 -29.82 7.88 25.60 0.20 -29.62 16 19 H 0.05 3.09 6.40 -2.91 -0.02 3.07 16 20 C 0.02 0.88 5.30 84.65 0.45 1.33 16 21 N -0.92 -52.75 11.32 21.45 0.24 -52.51 16 22 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 23 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 26 H 0.07 1.06 6.95 -2.38 -0.02 1.05 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 1.88 6.35 -2.39 -0.02 1.86 16 30 H 0.04 1.44 7.12 -2.39 -0.02 1.42 16 31 H 0.09 1.18 6.94 -2.39 -0.02 1.16 16 32 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.61 5.96 -2.39 -0.01 1.60 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.28 16 39 H 0.11 3.72 5.80 -2.39 -0.01 3.70 16 40 H 0.06 1.98 7.44 -2.39 -0.02 1.96 16 41 H 0.07 3.01 5.88 -2.39 -0.01 3.00 16 42 H 0.06 2.71 6.10 -2.39 -0.01 2.70 16 43 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 44 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.04 1.57 6.20 -2.39 -0.01 1.55 16 46 H 0.06 3.48 6.07 -2.39 -0.01 3.47 16 47 H 0.26 14.37 8.31 -92.72 -0.77 13.60 16 Total: -1.00 -66.61 345.85 2.31 -64.30 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.93 Total: 13.57 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 5.46 Total: -3.26 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -6.08 Total: -99.14 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.03 Total: -22.21 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -66.61 2.31 -64.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247729544.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.334 kcal (2) G-P(sol) polarization free energy of solvation -66.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds