Wall clock time and date at job start Tue Mar 31 2020 06:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47310 * 2 1 4 4 H 1.09006 * 109.47435 * 304.75836 * 3 2 1 5 5 C 1.50707 * 109.47442 * 184.75604 * 3 2 1 6 6 H 1.07993 * 120.00027 * 245.34879 * 5 3 2 7 7 C 1.37875 * 119.99568 * 65.34097 * 5 3 2 8 8 N 1.31513 * 119.99746 * 186.49944 * 7 5 3 9 9 Si 1.86803 * 120.00148 * 6.22857 * 7 5 3 10 10 H 1.48495 * 109.47215 * 270.27053 * 9 7 5 11 11 H 1.48496 * 109.47118 * 30.27695 * 9 7 5 12 12 H 1.48500 * 109.46939 * 150.27285 * 9 7 5 13 13 N 1.46503 * 109.47006 * 64.75780 * 3 2 1 14 14 C 1.34780 * 119.99822 * 275.00134 * 13 3 2 15 15 O 1.21276 * 120.00211 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99529 * 180.02562 * 14 13 3 17 17 H 1.08996 * 109.47452 * 50.38518 * 16 14 13 18 18 C 1.52999 * 109.47123 * 290.37856 * 16 14 13 19 19 N 1.46901 * 109.46681 * 170.38320 * 16 14 13 20 20 C 1.47849 * 110.99828 * 168.52440 * 19 16 14 21 21 H 1.08999 * 110.37356 * 27.53380 * 20 19 16 22 22 C 1.53002 * 110.37122 * 265.18997 * 20 19 16 23 23 C 1.54904 * 104.79604 * 146.36550 * 20 19 16 24 24 C 1.55141 * 101.65347 * 322.92369 * 23 20 19 25 25 C 1.47449 * 111.00149 * 289.36201 * 19 16 14 26 26 H 1.08998 * 109.88292 * 117.33694 * 25 19 16 27 27 C 1.53003 * 109.88320 * 356.15207 * 25 19 16 28 28 H 1.08996 * 109.47239 * 59.99746 * 1 2 3 29 29 H 1.09002 * 109.47300 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47228 * 299.99693 * 1 2 3 31 31 H 1.09007 * 109.47060 * 239.99782 * 2 1 3 32 32 H 1.09002 * 109.46984 * 120.00619 * 2 1 3 33 33 H 0.96995 * 120.00118 * 354.69282 * 8 7 5 34 34 H 0.96998 * 120.00017 * 95.00279 * 13 3 2 35 35 H 1.09002 * 109.46983 * 181.34099 * 18 16 14 36 36 H 1.08995 * 109.47502 * 301.34561 * 18 16 14 37 37 H 1.08998 * 109.46580 * 61.34718 * 18 16 14 38 38 H 1.09001 * 109.47003 * 65.38257 * 22 20 19 39 39 H 1.08995 * 109.46981 * 185.37731 * 22 20 19 40 40 H 1.08993 * 109.47118 * 305.38139 * 22 20 19 41 41 H 1.09005 * 110.98899 * 204.84212 * 23 20 19 42 42 H 1.08999 * 111.02761 * 81.03252 * 23 20 19 43 43 H 1.08990 * 110.71063 * 277.27658 * 24 23 20 44 44 H 1.08999 * 110.70911 * 154.03624 * 24 23 20 45 45 H 1.09001 * 109.47438 * 61.63653 * 27 25 19 46 46 H 1.09003 * 109.46538 * 181.62568 * 27 25 19 47 47 H 1.08991 * 109.47351 * 301.62753 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6087 1.9804 -0.8443 5 6 3.5424 1.4441 -0.1178 6 1 4.1476 1.8111 0.6978 7 6 4.1443 0.9768 -1.2669 8 7 5.4529 0.8582 -1.3223 9 14 3.1004 0.5051 -2.7425 10 1 2.7258 -0.9286 -2.6459 11 1 1.8710 1.3376 -2.7656 12 1 3.8748 0.7314 -3.9892 13 7 1.6474 2.0992 1.2494 14 6 0.4296 2.6662 1.3588 15 8 -0.3410 2.6332 0.4230 16 6 0.0261 3.3423 2.6438 17 1 0.8057 4.0410 2.9472 18 6 -0.1673 2.2882 3.7358 19 7 -1.2324 4.0717 2.4390 20 6 -1.8024 4.5173 3.7284 21 1 -1.0109 4.6598 4.4641 22 6 -2.8276 3.5018 4.2369 23 6 -2.4926 5.8672 3.4104 24 6 -1.5129 6.4845 2.3779 25 6 -1.0244 5.2547 1.5838 26 1 -1.6014 5.1537 0.6646 27 6 0.4624 5.4043 1.2552 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 5.9998 1.1710 -0.5848 34 1 2.2639 2.1259 1.9977 35 1 -0.4822 2.7749 4.6589 36 1 -0.9301 1.5757 3.4221 37 1 0.7729 1.7631 3.9044 38 1 -2.3247 2.5628 4.4686 39 1 -3.3069 3.8886 5.1361 40 1 -3.5812 3.3304 3.4685 41 1 -2.5627 6.4896 4.3025 42 1 -3.4765 5.7089 2.9689 43 1 -0.6795 6.9736 2.8820 44 1 -2.0330 7.1840 1.7235 45 1 0.8026 4.5277 0.7038 46 1 0.6120 6.2965 0.6471 47 1 1.0316 5.4953 2.1801 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248395895.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:42 Heat of formation + Delta-G solvation = -30.121103 kcal Electronic energy + Delta-G solvation = -24499.617771 eV Core-core repulsion = 21296.477507 eV Total energy + Delta-G solvation = -3203.140264 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.54169 -38.42779 -35.20551 -33.56911 -32.84219 -32.31848 -31.24954 -28.85689 -28.05968 -27.10409 -24.56127 -23.43159 -22.25477 -21.00148 -20.55955 -19.45812 -18.95351 -17.66909 -16.52947 -16.27809 -15.86210 -15.35227 -14.95774 -14.08448 -13.79812 -13.53776 -13.40465 -13.14399 -13.05410 -12.66622 -12.56821 -12.29035 -12.19721 -12.10695 -11.92365 -11.80242 -11.66199 -11.41176 -11.24600 -10.98103 -10.87329 -10.72730 -10.64350 -10.60480 -10.55866 -10.41510 -9.78030 -9.65011 -8.99189 -8.83239 -8.51613 -8.10030 -7.98138 -6.53891 -4.21926 3.35649 3.38715 3.46618 3.60612 3.65186 4.21855 4.42325 4.53576 4.63499 4.83968 5.09272 5.13214 5.19827 5.22733 5.27781 5.34571 5.37163 5.49301 5.60171 5.64729 5.66170 5.69073 5.77429 5.83527 5.84517 5.98256 6.01837 6.08059 6.11641 6.18173 6.27796 6.31535 6.35851 6.43160 6.73823 6.79620 6.95820 7.05907 7.12556 7.13865 7.38703 7.49237 7.68486 8.24357 8.56285 8.73664 9.10675 9.48767 10.86256 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026243 B = 0.004948 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.699142 B = 5656.945676 C = 5948.434543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.244 3.756 4 H 0.047 0.953 5 C -0.607 4.607 6 H 0.061 0.939 7 C 0.036 3.964 8 N -0.906 5.906 9 Si 1.048 2.952 10 H -0.280 1.280 11 H -0.273 1.273 12 H -0.288 1.288 13 N -0.708 5.708 14 C 0.514 3.486 15 O -0.531 6.531 16 C 0.050 3.950 17 H 0.067 0.933 18 C -0.148 4.148 19 N -0.495 5.495 20 C 0.068 3.932 21 H 0.052 0.948 22 C -0.142 4.142 23 C -0.124 4.124 24 C -0.140 4.140 25 C 0.079 3.921 26 H 0.090 0.910 27 C -0.180 4.180 28 H 0.052 0.948 29 H 0.029 0.971 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.268 0.732 34 H 0.389 0.611 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.548 7.993 11.778 19.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.140 3.860 4 H 0.065 0.935 5 C -0.646 4.646 6 H 0.079 0.921 7 C -0.170 4.170 8 N -0.540 5.540 9 Si 0.877 3.123 10 H -0.207 1.207 11 H -0.199 1.199 12 H -0.215 1.215 13 N -0.357 5.357 14 C 0.299 3.701 15 O -0.408 6.408 16 C -0.062 4.062 17 H 0.084 0.916 18 C -0.205 4.205 19 N -0.220 5.220 20 C -0.041 4.041 21 H 0.070 0.930 22 C -0.200 4.200 23 C -0.162 4.162 24 C -0.179 4.179 25 C -0.029 4.029 26 H 0.108 0.892 27 C -0.238 4.238 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.221 0.779 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.097 0.903 46 H 0.079 0.921 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.342 6.963 9.305 18.460 hybrid contribution 1.033 1.174 2.366 2.836 sum -13.310 8.137 11.671 19.483 Atomic orbital electron populations 1.21887 0.97026 0.98846 1.02331 1.22240 0.94102 0.99991 1.01134 1.19183 0.95533 0.88402 0.82851 0.93537 1.22177 0.89800 1.48236 1.04352 0.92123 1.25679 0.97325 0.93677 1.00287 1.70833 1.04642 1.42664 1.35895 0.83953 0.75344 0.77209 0.75796 1.20727 1.19856 1.21480 1.46256 1.14849 1.56645 1.17908 1.20026 0.82349 0.78961 0.88813 1.90671 1.51381 1.59137 1.39604 1.21894 0.92760 0.96445 0.95061 0.91566 1.22035 1.02850 0.98553 0.97111 1.63495 1.24359 1.22105 1.12064 1.22560 0.96316 0.94209 0.90966 0.92974 1.21932 0.98888 0.98951 1.00224 1.22725 0.99202 0.95464 0.98795 1.22919 0.98991 0.97878 0.98078 1.22315 0.95931 0.87630 0.97001 0.89224 1.22564 0.96186 1.03580 1.01480 0.92932 0.95178 0.92897 0.92474 0.92865 0.92205 0.77862 0.91536 0.91173 0.91704 0.91889 0.92879 0.91829 0.91180 0.90575 0.91601 0.90910 0.90325 0.92140 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.51 37.16 0.32 -2.62 16 2 C -0.14 -3.04 5.21 -26.74 -0.14 -3.18 16 3 C 0.24 5.80 1.82 -69.08 -0.13 5.67 16 4 H 0.05 1.23 6.06 -51.93 -0.31 0.91 16 5 C -0.61 -16.37 9.09 -34.44 -0.31 -16.69 16 6 H 0.06 1.71 7.95 -52.49 -0.42 1.29 16 7 C 0.04 1.01 5.43 -17.82 -0.10 0.92 16 8 N -0.91 -27.21 13.69 55.43 0.76 -26.46 16 9 Si 1.05 25.69 25.37 -169.99 -4.31 21.38 16 10 H -0.28 -6.54 6.74 56.52 0.38 -6.16 16 11 H -0.27 -6.51 6.37 56.52 0.36 -6.15 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 N -0.71 -14.06 5.02 -54.93 -0.28 -14.33 16 14 C 0.51 9.58 2.94 -10.98 -0.03 9.55 16 15 O -0.53 -11.61 12.55 5.56 0.07 -11.54 16 16 C 0.05 0.73 1.91 -68.86 -0.13 0.60 16 17 H 0.07 0.92 5.77 -51.93 -0.30 0.62 16 18 C -0.15 -1.82 7.68 37.16 0.29 -1.53 16 19 N -0.50 -6.96 4.33 -209.03 -0.91 -7.86 16 20 C 0.07 0.74 2.37 -66.18 -0.16 0.59 16 21 H 0.05 0.55 6.99 -51.93 -0.36 0.19 16 22 C -0.14 -1.43 9.10 37.16 0.34 -1.09 16 23 C -0.12 -1.19 6.49 -24.59 -0.16 -1.35 16 24 C -0.14 -1.48 6.47 -24.91 -0.16 -1.64 16 25 C 0.08 1.09 3.35 -66.72 -0.22 0.87 16 26 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 27 C -0.18 -2.64 7.73 37.16 0.29 -2.35 16 28 H 0.05 1.13 7.83 -51.93 -0.41 0.73 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 1.08 5.65 -51.93 -0.29 0.78 16 31 H 0.06 1.33 4.43 -51.92 -0.23 1.10 16 32 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.27 7.95 8.72 -40.82 -0.36 7.59 16 34 H 0.39 7.01 8.53 -40.82 -0.35 6.66 16 35 H 0.07 0.68 5.47 -51.93 -0.28 0.39 16 36 H 0.07 0.94 7.54 -51.93 -0.39 0.55 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.64 5.28 -51.93 -0.27 0.37 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.74 8.06 -51.93 -0.42 0.32 16 43 H 0.07 0.66 7.85 -51.93 -0.41 0.25 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.08 1.43 4.67 -51.93 -0.24 1.19 16 46 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.05 0.71 6.46 -51.93 -0.34 0.38 16 LS Contribution 339.82 15.07 5.12 5.12 Total: -1.00 -30.44 339.82 -7.90 -38.34 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -8.04 Total: 7.63 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -0.31 Total: -12.27 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.42 Total: -48.65 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.07 Total: -11.54 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -4.31 Total: 21.38 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.44 -7.90 -38.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248395895.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.221 kcal (2) G-P(sol) polarization free energy of solvation -30.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds