Wall clock time and date at job start Tue Mar 31 2020 06:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46738 * 2 1 4 4 H 1.09002 * 109.46735 * 296.58060 * 3 2 1 5 5 C 1.50698 * 109.46703 * 176.58171 * 3 2 1 6 6 H 1.08000 * 119.99571 * 239.99618 * 5 3 2 7 7 C 1.37878 * 120.00253 * 60.00426 * 5 3 2 8 8 N 1.31513 * 119.99800 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99945 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47439 * 89.99273 * 9 7 5 11 11 H 1.48500 * 109.47112 * 210.00041 * 9 7 5 12 12 H 1.48507 * 109.47215 * 329.99233 * 9 7 5 13 13 N 1.46502 * 109.47066 * 56.57876 * 3 2 1 14 14 C 1.34772 * 119.99735 * 244.19107 * 13 3 2 15 15 O 1.21281 * 120.00776 * 359.65889 * 14 13 3 16 16 C 1.50701 * 119.99694 * 179.65519 * 14 13 3 17 17 H 1.09000 * 109.47062 * 115.49075 * 16 14 13 18 18 C 1.52998 * 109.47274 * 355.49312 * 16 14 13 19 19 N 1.46899 * 109.47488 * 235.49438 * 16 14 13 20 20 C 1.47443 * 111.00371 * 196.03719 * 19 16 14 21 21 H 1.09003 * 109.88806 * 242.66381 * 20 19 16 22 22 C 1.53001 * 109.88780 * 3.84445 * 20 19 16 23 23 C 1.54314 * 107.23703 * 123.25639 * 20 19 16 24 24 C 1.55136 * 103.01806 * 22.28204 * 23 20 19 25 25 C 1.47843 * 110.99759 * 316.87626 * 19 16 14 26 26 H 1.08998 * 110.37440 * 332.46777 * 25 19 16 27 27 C 1.53001 * 110.37491 * 94.80556 * 25 19 16 28 28 H 1.08993 * 109.47186 * 294.71718 * 1 2 3 29 29 H 1.09006 * 109.47042 * 54.72589 * 1 2 3 30 30 H 1.08996 * 109.46693 * 174.71540 * 1 2 3 31 31 H 1.09001 * 109.47532 * 240.00195 * 2 1 3 32 32 H 1.08999 * 109.47242 * 119.99444 * 2 1 3 33 33 H 0.97004 * 119.99452 * 179.97438 * 8 7 5 34 34 H 0.96998 * 120.00024 * 64.19825 * 13 3 2 35 35 H 1.09008 * 109.47365 * 70.51850 * 18 16 14 36 36 H 1.08999 * 109.47371 * 310.52667 * 18 16 14 37 37 H 1.09004 * 109.47914 * 190.51965 * 18 16 14 38 38 H 1.09001 * 109.46945 * 62.36948 * 22 20 19 39 39 H 1.08996 * 109.47680 * 182.36504 * 22 20 19 40 40 H 1.09005 * 109.47421 * 302.37256 * 22 20 19 41 41 H 1.09004 * 110.70579 * 263.90289 * 23 20 19 42 42 H 1.08999 * 110.85768 * 140.73975 * 23 20 19 43 43 H 1.09004 * 110.98786 * 206.25885 * 24 23 20 44 44 H 1.09003 * 111.02394 * 82.45760 * 24 23 20 45 45 H 1.08998 * 109.46938 * 83.29011 * 27 25 19 46 46 H 1.09003 * 109.47421 * 203.29555 * 27 25 19 47 47 H 1.08999 * 109.47174 * 323.29506 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.7275 1.9384 -0.9191 5 6 3.5446 1.4434 0.0847 6 1 4.0384 1.9275 0.9143 7 6 4.2907 0.8265 -0.8969 8 7 3.6893 0.2368 -1.9069 9 14 6.1557 0.8282 -0.7922 10 1 6.6105 -0.3695 -0.0412 11 1 6.7285 0.8006 -2.1620 12 1 6.6110 2.0550 -0.0901 13 7 1.4854 2.1566 1.1528 14 6 0.6511 3.1978 0.9629 15 8 0.3642 3.5478 -0.1623 16 6 0.0746 3.9273 2.1489 17 1 0.4414 4.9537 2.1576 18 6 0.5012 3.2224 3.4380 19 7 -1.3914 3.9321 2.0556 20 6 -1.9754 4.9381 2.9616 21 1 -2.5980 4.4467 3.7093 22 6 -0.8606 5.7303 3.6476 23 6 -2.8378 5.8839 2.0997 24 6 -3.1503 5.0261 0.8454 25 6 -1.8335 4.2279 0.6762 26 1 -1.0874 4.8318 0.1599 27 6 -2.0926 2.9293 -0.0902 28 1 -0.3633 0.4297 0.9334 29 1 -0.3633 0.5935 -0.8390 30 1 -0.3632 -1.0233 -0.0946 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 4.2143 -0.1970 -2.5977 34 1 1.7188 1.8799 2.0528 35 1 1.5672 3.3799 3.6027 36 1 0.3010 2.1544 3.3516 37 1 -0.0604 3.6305 4.2784 38 1 -0.2814 6.2673 2.8964 39 1 -1.2983 6.4429 4.3466 40 1 -0.2076 5.0451 4.1883 41 1 -2.2749 6.7763 1.8258 42 1 -3.7564 6.1541 2.6205 43 1 -3.3382 5.6579 -0.0227 44 1 -3.9915 4.3575 1.0286 45 1 -3.0947 2.5664 0.1382 46 1 -2.0091 3.1164 -1.1608 47 1 -1.3586 2.1800 0.2060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248395896.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:50 Heat of formation + Delta-G solvation = -21.682985 kcal Electronic energy + Delta-G solvation = -24592.428713 eV Core-core repulsion = 21389.654353 eV Total energy + Delta-G solvation = -3202.774360 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.47373 -38.10566 -35.15961 -34.16254 -32.24709 -31.96008 -30.86460 -28.65718 -27.94036 -26.79395 -24.06545 -23.82281 -22.79803 -20.58047 -20.50415 -19.39778 -18.90817 -17.01136 -16.43624 -15.86619 -15.40147 -15.22665 -14.59085 -14.07600 -13.90700 -13.48362 -13.20442 -13.02247 -12.94845 -12.80932 -12.59177 -12.29608 -12.00837 -11.66357 -11.65864 -11.41172 -11.24653 -11.16577 -11.05216 -10.99526 -10.93837 -10.72445 -10.54614 -10.46844 -10.32187 -10.14699 -9.86862 -9.72583 -9.16734 -8.68582 -8.38905 -8.06135 -7.75248 -6.06349 -4.14023 3.26767 3.32314 3.34421 3.37066 4.08733 4.26420 4.42977 4.71384 4.79711 4.88584 5.16731 5.24819 5.28629 5.30539 5.33526 5.39152 5.57139 5.62365 5.74395 5.81169 5.84266 5.94680 6.01324 6.03349 6.08150 6.18898 6.27212 6.28135 6.31518 6.41629 6.42908 6.54113 6.59863 6.82631 6.99937 7.11107 7.26854 7.28085 7.29906 7.51907 7.64205 7.75569 8.04420 8.22586 8.69264 8.86413 9.20298 9.53168 10.98864 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025218 B = 0.004924 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.050544 B = 5684.703789 C = 6150.889070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.262 3.738 4 H 0.062 0.938 5 C -0.530 4.530 6 H 0.058 0.942 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.702 5.702 14 C 0.511 3.489 15 O -0.549 6.549 16 C 0.048 3.952 17 H 0.078 0.922 18 C -0.157 4.157 19 N -0.507 5.507 20 C 0.072 3.928 21 H 0.084 0.916 22 C -0.190 4.190 23 C -0.138 4.138 24 C -0.129 4.129 25 C 0.068 3.932 26 H 0.084 0.916 27 C -0.122 4.122 28 H 0.038 0.962 29 H 0.046 0.954 30 H 0.031 0.969 31 H 0.097 0.903 32 H 0.035 0.965 33 H 0.263 0.737 34 H 0.387 0.613 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.036 0.964 46 H 0.052 0.948 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.726 7.479 10.369 16.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.160 3.840 4 H 0.080 0.920 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.524 5.524 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.350 5.350 14 C 0.296 3.704 15 O -0.428 6.428 16 C -0.064 4.064 17 H 0.095 0.905 18 C -0.214 4.214 19 N -0.233 5.233 20 C -0.037 4.037 21 H 0.102 0.898 22 C -0.247 4.247 23 C -0.177 4.177 24 C -0.167 4.167 25 C -0.039 4.039 26 H 0.102 0.898 27 C -0.180 4.180 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.116 0.884 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.221 0.779 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.055 0.945 46 H 0.071 0.929 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.018 7.096 9.507 16.191 hybrid contribution 1.462 0.629 0.273 1.615 sum -9.557 7.725 9.780 15.705 Atomic orbital electron populations 1.21843 0.98898 0.99044 1.00359 1.21896 0.91966 0.99876 1.02672 1.18863 0.92002 0.88126 0.85032 0.92018 1.21365 0.90916 1.35782 1.08821 0.92387 1.24882 0.98699 0.95039 0.95062 1.69887 1.35332 1.35878 1.11263 0.86514 0.85292 0.78329 0.77338 1.20635 1.21158 1.20006 1.46463 1.45757 1.31430 1.11353 1.20096 0.79600 0.81052 0.89700 1.90637 1.60438 1.66698 1.25055 1.21972 0.89709 0.99711 0.94997 0.90485 1.22176 1.01126 1.01756 0.96383 1.63813 1.05786 1.46868 1.06850 1.22369 0.95404 0.90908 0.94979 0.89848 1.22761 0.99779 1.01066 1.01081 1.22865 0.99788 0.98193 0.96817 1.22864 0.98302 0.98295 0.97248 1.22790 0.95198 0.97349 0.88584 0.89785 1.21772 1.00183 0.97079 0.98972 0.94273 0.93501 0.95002 0.88430 0.94614 0.92731 0.77914 0.91690 0.91262 0.90829 0.92371 0.92451 0.89882 0.91617 0.91267 0.91266 0.91120 0.94518 0.92902 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.79 37.16 0.33 -2.60 16 2 C -0.13 -2.92 5.40 -26.73 -0.14 -3.06 16 3 C 0.26 6.46 2.41 -69.08 -0.17 6.30 16 4 H 0.06 1.78 6.91 -51.93 -0.36 1.42 16 5 C -0.53 -14.13 8.84 -34.44 -0.30 -14.44 16 6 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 7 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 8 N -0.89 -24.87 11.35 55.43 0.63 -24.24 16 9 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.70 -14.26 3.89 -54.93 -0.21 -14.48 16 14 C 0.51 10.02 5.88 -10.99 -0.06 9.95 16 15 O -0.55 -12.51 11.32 5.56 0.06 -12.45 16 16 C 0.05 0.72 2.13 -68.87 -0.15 0.57 16 17 H 0.08 1.14 5.52 -51.93 -0.29 0.86 16 18 C -0.16 -1.94 7.42 37.16 0.28 -1.66 16 19 N -0.51 -7.30 4.68 -209.05 -0.98 -8.28 16 20 C 0.07 0.82 3.71 -66.73 -0.25 0.57 16 21 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 22 C -0.19 -1.91 7.66 37.16 0.28 -1.63 16 23 C -0.14 -1.48 6.47 -24.91 -0.16 -1.64 16 24 C -0.13 -1.59 6.48 -24.59 -0.16 -1.75 16 25 C 0.07 1.06 2.33 -66.19 -0.15 0.91 16 26 H 0.08 1.53 6.04 -51.93 -0.31 1.22 16 27 C -0.12 -2.09 8.25 37.16 0.31 -1.78 16 28 H 0.04 0.75 7.10 -51.93 -0.37 0.38 16 29 H 0.05 1.00 7.56 -51.93 -0.39 0.61 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.10 2.55 6.17 -51.93 -0.32 2.23 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 34 H 0.39 6.95 6.50 -40.82 -0.27 6.69 16 35 H 0.06 0.75 7.98 -51.92 -0.41 0.33 16 36 H 0.07 0.90 7.28 -51.93 -0.38 0.52 16 37 H 0.07 0.77 5.40 -51.93 -0.28 0.49 16 38 H 0.06 0.64 6.64 -51.93 -0.34 0.30 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.81 4.12 -51.93 -0.21 0.60 16 41 H 0.07 0.70 7.81 -51.93 -0.41 0.30 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.84 7.73 -51.93 -0.40 0.44 16 45 H 0.04 0.55 7.64 -51.93 -0.40 0.16 16 46 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.07 1.38 4.03 -51.93 -0.21 1.17 16 LS Contribution 340.73 15.07 5.13 5.13 Total: -1.00 -28.85 340.73 -8.69 -37.54 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -7.85 Total: 9.44 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -0.45 Total: -8.58 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.56 Total: -47.00 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.06 Total: -12.45 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.85 -8.69 -37.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248395896.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.858 kcal (2) G-P(sol) polarization free energy of solvation -28.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds