Wall clock time and date at job start Tue Mar 31 2020 05:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47124 * 2 1 4 4 H 1.08991 * 109.50187 * 304.92303 * 3 2 1 5 5 C 1.53116 * 109.49896 * 65.00253 * 3 2 1 6 6 C 1.53127 * 109.15953 * 177.59502 * 5 3 2 7 7 C 1.53038 * 109.27476 * 302.34425 * 6 5 3 8 8 N 1.46846 * 109.52392 * 59.18044 * 7 6 5 9 9 C 1.46894 * 111.00347 * 174.15443 * 8 7 6 10 10 H 1.09004 * 109.47570 * 294.78745 * 9 8 7 11 11 C 1.52999 * 109.47728 * 174.77826 * 9 8 7 12 12 C 1.50707 * 109.46972 * 54.77962 * 9 8 7 13 13 O 1.21284 * 119.99826 * 28.97462 * 12 9 8 14 14 N 1.34773 * 120.00146 * 208.97895 * 12 9 8 15 15 C 1.46499 * 120.00226 * 354.58862 * 14 12 9 16 16 C 1.46502 * 120.00020 * 174.59545 * 14 12 9 17 17 C 1.50691 * 109.47583 * 89.99544 * 16 14 12 18 18 H 1.08004 * 119.99923 * 0.02562 * 17 16 14 19 19 C 1.37873 * 120.00284 * 180.02562 * 17 16 14 20 20 N 1.31513 * 119.99858 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00245 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47442 * 59.99999 * 21 19 17 23 23 H 1.48505 * 109.47287 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47166 * 299.99749 * 21 19 17 25 25 C 1.46847 * 111.19953 * 298.25489 * 8 7 6 26 26 H 1.08995 * 109.46703 * 299.99646 * 1 2 3 27 27 H 1.08997 * 109.47346 * 59.99871 * 1 2 3 28 28 H 1.09005 * 109.47189 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47618 * 120.00603 * 2 1 3 30 30 H 1.09005 * 109.47259 * 240.00469 * 2 1 3 31 31 H 1.09002 * 109.52501 * 297.49864 * 5 3 2 32 32 H 1.09004 * 109.52300 * 57.62904 * 5 3 2 33 33 H 1.08997 * 109.50102 * 62.28414 * 6 5 3 34 34 H 1.08994 * 109.50180 * 182.36834 * 6 5 3 35 35 H 1.09004 * 109.45809 * 179.19280 * 7 6 5 36 36 H 1.08996 * 109.46883 * 299.16452 * 7 6 5 37 37 H 1.09005 * 109.47035 * 61.39447 * 11 9 8 38 38 H 1.08995 * 109.47818 * 181.39624 * 11 9 8 39 39 H 1.09003 * 109.46910 * 301.40186 * 11 9 8 40 40 H 1.09000 * 109.46899 * 94.49847 * 15 14 12 41 41 H 1.09000 * 109.47416 * 214.50586 * 15 14 12 42 42 H 1.09009 * 109.47054 * 334.50300 * 15 14 12 43 43 H 1.09000 * 109.46976 * 209.99965 * 16 14 12 44 44 H 1.09004 * 109.46789 * 329.99487 * 16 14 12 45 45 H 0.97006 * 120.00261 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.46342 * 301.72652 * 25 8 7 47 47 H 1.08996 * 109.46512 * 181.75865 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9816 -0.8424 5 6 1.6353 2.1277 1.3081 6 6 2.2006 3.5507 1.3259 7 6 3.7216 3.4921 1.1667 8 7 4.0572 2.8286 -0.0996 9 6 5.5035 2.8773 -0.3523 10 1 5.8124 3.9125 -0.4974 11 6 5.8294 2.0669 -1.6085 12 6 6.2393 2.2942 0.8266 13 8 5.7125 1.4407 1.5084 14 7 7.4827 2.7214 1.1232 15 6 8.1652 3.6640 0.2334 16 6 8.1518 2.2428 2.3354 17 6 8.9294 0.9913 2.0194 18 1 8.9258 0.5924 1.0157 19 6 9.6453 0.3554 3.0114 20 7 9.6500 0.8415 4.2334 21 14 10.6097 -1.1956 2.6194 22 1 11.6261 -0.8969 1.5789 23 1 11.2869 -1.6814 3.8486 24 1 9.6822 -2.2421 2.1194 25 6 3.5656 1.4451 -0.1208 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5139 0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 0.5482 2.1668 1.3778 32 1 2.0345 1.5656 2.1524 33 1 1.7705 4.1234 0.5044 34 1 1.9515 4.0294 2.2729 35 1 4.1257 4.5044 1.1646 36 1 4.1523 2.9309 1.9959 37 1 5.3168 2.5035 -2.4657 38 1 6.9053 2.0825 -1.7820 39 1 5.4981 1.0374 -1.4727 40 1 8.0033 4.6816 0.5891 41 1 9.2334 3.4475 0.2251 42 1 7.7664 3.5644 -0.7762 43 1 8.8329 3.0110 2.7018 44 1 7.4061 2.0240 3.0998 45 1 10.1533 0.3939 4.9315 46 1 3.9970 0.8935 0.7145 47 1 3.8565 0.9706 -1.0580 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248893927.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:21 Heat of formation + Delta-G solvation = -44.218504 kcal Electronic energy + Delta-G solvation = -23987.006995 eV Core-core repulsion = 20783.255422 eV Total energy + Delta-G solvation = -3203.751573 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.20046 -38.06913 -35.21869 -34.66118 -33.02947 -32.47853 -29.75338 -29.24535 -27.74905 -25.95241 -24.70209 -24.07740 -23.02471 -21.51391 -20.76891 -19.57588 -18.26101 -16.54792 -16.47696 -16.16128 -15.08942 -14.83643 -14.71335 -14.40665 -14.32646 -13.91414 -13.55832 -13.44235 -13.21428 -12.86583 -12.61708 -12.31302 -12.13756 -12.08541 -11.97456 -11.66916 -11.43056 -11.28435 -11.24919 -11.05496 -10.92322 -10.83446 -10.68693 -10.57546 -10.43380 -10.14783 -10.04507 -9.90385 -9.66264 -9.44107 -8.44167 -7.70868 -7.60721 -6.04882 -4.09513 3.30633 3.33639 3.35371 3.40448 3.97875 4.09224 4.44103 4.83811 4.87293 4.98763 5.11677 5.21497 5.27657 5.29652 5.31873 5.37857 5.38897 5.60772 5.64450 5.67628 5.76720 5.78056 5.83633 5.91082 5.94136 5.98007 6.01188 6.06524 6.08854 6.16160 6.19761 6.20253 6.29593 6.31608 6.41359 6.47800 6.70385 7.02107 7.23875 7.32434 7.41525 7.54259 7.91115 8.23011 8.41310 8.89262 9.08012 9.55467 11.03201 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018973 B = 0.004640 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.428077 B = 6033.641828 C = 6532.068219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.080 4.080 4 H 0.070 0.930 5 C -0.116 4.116 6 C -0.110 4.110 7 C 0.042 3.958 8 N -0.511 5.511 9 C 0.060 3.940 10 H 0.096 0.904 11 C -0.142 4.142 12 C 0.479 3.521 13 O -0.538 6.538 14 N -0.601 5.601 15 C 0.080 3.920 16 C 0.246 3.754 17 C -0.524 4.524 18 H 0.056 0.944 19 C 0.061 3.939 20 N -0.896 5.896 21 Si 0.898 3.102 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 C 0.034 3.966 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.030 0.970 44 H 0.040 0.960 45 H 0.263 0.737 46 H 0.078 0.922 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.470 5.529 -10.522 17.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.099 4.099 4 H 0.088 0.912 5 C -0.153 4.153 6 C -0.148 4.148 7 C -0.086 4.086 8 N -0.234 5.234 9 C -0.052 4.052 10 H 0.114 0.886 11 C -0.200 4.200 12 C 0.265 3.735 13 O -0.416 6.416 14 N -0.333 5.333 15 C -0.064 4.064 16 C 0.127 3.873 17 C -0.563 4.563 18 H 0.074 0.926 19 C -0.141 4.141 20 N -0.535 5.535 21 Si 0.725 3.275 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.093 4.093 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.048 0.952 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.096 0.904 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.883 5.317 -10.332 18.104 hybrid contribution 1.207 -1.183 0.524 1.770 sum -12.676 4.133 -9.808 16.552 Atomic orbital electron populations 1.21789 0.96110 1.01173 1.01660 1.21526 0.95519 0.96586 1.02142 1.21166 0.95441 0.95346 0.97920 0.91166 1.21664 0.99832 0.95981 0.97867 1.21511 0.95002 0.97065 1.01250 1.22200 0.96129 0.98721 0.91536 1.62465 1.10252 1.17400 1.33307 1.21894 0.88218 1.00831 0.94259 0.88571 1.21850 1.01828 1.00511 0.95814 1.21539 0.82298 0.82941 0.86751 1.90586 1.66973 1.31380 1.52626 1.48301 1.14988 1.44141 1.25875 1.21701 0.99029 0.92305 0.93380 1.19243 0.92387 0.94394 0.81313 1.21367 1.29036 1.09926 0.95940 0.92606 1.24930 0.96694 0.97614 0.94841 1.69922 1.42062 1.40287 1.01226 0.86569 0.79932 0.83378 0.77602 1.20237 1.21156 1.20222 1.22544 0.94027 0.89619 1.03107 0.92626 0.92987 0.93128 0.91866 0.92130 0.92185 0.92018 0.91670 0.91936 0.91601 0.92733 0.91196 0.91637 0.91560 0.93745 0.90866 0.92073 0.95174 0.94224 0.92687 0.90373 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.67 37.16 0.36 -1.07 16 2 C -0.12 -1.37 5.41 -26.73 -0.14 -1.51 16 3 C -0.08 -1.00 2.35 -90.54 -0.21 -1.22 16 4 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 5 C -0.12 -1.44 4.98 -26.61 -0.13 -1.58 16 6 C -0.11 -1.38 6.09 -26.65 -0.16 -1.54 16 7 C 0.04 0.64 4.92 -3.83 -0.02 0.62 16 8 N -0.51 -7.70 4.72 -228.08 -1.08 -8.77 16 9 C 0.06 0.94 2.09 -68.86 -0.14 0.79 16 10 H 0.10 1.33 6.87 -51.93 -0.36 0.97 16 11 C -0.14 -1.94 8.46 37.16 0.31 -1.62 16 12 C 0.48 9.85 5.82 -10.98 -0.06 9.79 16 13 O -0.54 -13.15 12.13 5.55 0.07 -13.08 16 14 N -0.60 -12.77 2.86 -182.95 -0.52 -13.30 16 15 C 0.08 1.28 9.88 59.85 0.59 1.87 16 16 C 0.25 6.49 5.14 -5.20 -0.03 6.46 16 17 C -0.52 -14.98 9.39 -34.45 -0.32 -15.30 16 18 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 21 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.03 0.52 3.92 -3.83 -0.02 0.51 16 26 H 0.05 0.52 6.62 -51.93 -0.34 0.17 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.64 6.70 -51.93 -0.35 0.30 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 36 H 0.05 1.02 6.22 -51.93 -0.32 0.70 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.87 6.95 -51.93 -0.36 0.51 16 39 H 0.07 0.98 6.10 -51.93 -0.32 0.66 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 42 H 0.06 0.80 5.20 -51.92 -0.27 0.53 16 43 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 44 H 0.04 1.18 7.50 -51.93 -0.39 0.79 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.08 1.49 5.57 -51.93 -0.29 1.20 16 47 H 0.07 1.03 5.80 -51.93 -0.30 0.73 16 LS Contribution 352.77 15.07 5.32 5.32 Total: -1.00 -31.93 352.77 -8.91 -40.83 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -8.33 Total: 0.22 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -0.08 Total: -2.14 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.86 Total: -48.16 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.07 Total: -13.08 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.93 -8.91 -40.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248893927.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.384 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds