Wall clock time and date at job start Tue Mar 31 2020 06:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47094 * 2 1 4 4 N 1.46504 * 109.47039 * 179.97438 * 3 2 1 5 5 C 1.36930 * 120.00185 * 272.13981 * 4 3 2 6 6 H 1.08000 * 119.99988 * 8.56269 * 5 4 3 7 7 C 1.38813 * 119.99972 * 188.57189 * 5 4 3 8 8 N 1.31617 * 120.00291 * 24.82225 * 7 5 4 9 9 Si 1.86802 * 119.99833 * 204.82762 * 7 5 4 10 10 H 1.48503 * 109.47150 * 89.99428 * 9 7 5 11 11 H 1.48503 * 109.47322 * 209.99331 * 9 7 5 12 12 H 1.48497 * 109.47012 * 329.99872 * 9 7 5 13 13 C 1.46508 * 119.99757 * 92.13602 * 4 3 2 14 14 C 1.50697 * 109.46925 * 89.99941 * 13 4 3 15 15 O 1.21289 * 120.00349 * 359.97438 * 14 13 4 16 16 N 1.34776 * 120.00102 * 179.97438 * 14 13 4 17 17 C 1.46931 * 120.63033 * 359.71885 * 16 14 13 18 18 C 1.53617 * 108.54177 * 126.36900 * 17 16 14 19 19 H 1.09004 * 109.66253 * 294.85280 * 18 17 16 20 20 C 1.53000 * 109.43021 * 174.72746 * 18 17 16 21 21 C 1.53042 * 109.24178 * 54.85788 * 18 17 16 22 22 C 1.53039 * 109.53767 * 298.50944 * 21 18 17 23 23 H 1.09002 * 109.52212 * 181.32898 * 22 21 18 24 24 C 1.52997 * 109.49971 * 301.40967 * 22 21 18 25 25 C 1.46924 * 120.63360 * 180.02562 * 16 14 13 26 26 H 1.09003 * 109.47109 * 59.99862 * 1 2 3 27 27 H 1.09000 * 109.47521 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47350 * 300.00518 * 1 2 3 29 29 H 1.08996 * 109.47181 * 239.99599 * 2 1 3 30 30 H 1.09003 * 109.46771 * 119.99711 * 2 1 3 31 31 H 1.08996 * 109.47434 * 59.99754 * 3 2 1 32 32 H 1.09003 * 109.47076 * 299.99525 * 3 2 1 33 33 H 0.96999 * 120.00299 * 180.02562 * 8 7 5 34 34 H 1.08996 * 109.46919 * 330.00394 * 13 4 3 35 35 H 1.08996 * 109.47093 * 210.00300 * 13 4 3 36 36 H 1.08993 * 109.58812 * 246.20532 * 17 16 14 37 37 H 1.09001 * 109.58087 * 6.63165 * 17 16 14 38 38 H 1.08994 * 109.47081 * 300.28862 * 20 18 17 39 39 H 1.08994 * 109.47228 * 60.29341 * 20 18 17 40 40 H 1.09006 * 109.46867 * 180.28673 * 20 18 17 41 41 H 1.09005 * 109.45911 * 178.48628 * 21 18 17 42 42 H 1.09005 * 109.44744 * 58.52798 * 21 18 17 43 43 H 1.08994 * 109.47028 * 179.83310 * 24 22 21 44 44 H 1.08996 * 109.47498 * 299.84153 * 24 22 21 45 45 H 1.09002 * 109.46511 * 59.84321 * 24 22 21 46 46 H 1.09005 * 109.58684 * 353.36809 * 25 16 14 47 47 H 1.09001 * 109.59272 * 113.65240 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3984 1.1859 6 1 3.6578 1.2247 2.1100 7 6 5.5657 1.5772 1.1998 8 7 6.1519 2.2489 0.2316 9 14 6.5861 0.8643 2.5927 10 1 7.0178 -0.5111 2.2364 11 1 7.7818 1.7161 2.8166 12 1 5.7698 0.8213 3.8325 13 6 4.2380 1.4896 -1.2670 14 6 4.4893 2.9256 -1.6489 15 8 4.0945 3.8215 -0.9330 16 7 5.1527 3.2143 -2.7860 17 6 5.6424 2.1399 -3.6604 18 6 5.1142 2.3877 -5.0815 19 1 4.0279 2.2990 -5.0896 20 6 5.7181 1.3556 -6.0360 21 6 5.5152 3.7948 -5.5304 22 6 4.8847 4.8294 -4.5954 23 1 5.1510 5.8322 -4.9292 24 6 3.3628 4.6728 -4.6125 25 6 5.4058 4.6093 -3.1714 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 7.1138 2.3735 0.2411 34 1 3.6492 1.0044 -2.0454 35 1 5.1903 0.9713 -1.1555 36 1 6.7323 2.1424 -3.6671 37 1 5.2794 1.1787 -3.2965 38 1 6.8044 1.4440 -6.0267 39 1 5.4322 0.3537 -5.7160 40 1 5.3476 1.5340 -7.0456 41 1 5.1653 3.9645 -6.5487 42 1 6.6006 3.8903 -5.4987 43 1 2.9145 5.4079 -3.9442 44 1 2.9928 4.8294 -5.6257 45 1 3.0971 3.6695 -4.2796 46 1 4.8866 5.2781 -2.4848 47 1 6.4767 4.8096 -3.1366 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250201584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:24 Heat of formation + Delta-G solvation = -26.088021 kcal Electronic energy + Delta-G solvation = -24395.525565 eV Core-core repulsion = 21192.560188 eV Total energy + Delta-G solvation = -3202.965377 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.49103 -37.19469 -35.50371 -33.12264 -32.79835 -32.65909 -30.50387 -27.67210 -26.52527 -26.17171 -25.49333 -24.45636 -22.17081 -21.20336 -20.24468 -19.20080 -17.99984 -16.62586 -16.00795 -15.16684 -15.02280 -14.57203 -14.37943 -14.27547 -13.80859 -13.68101 -13.50457 -13.03748 -12.83118 -12.72231 -12.40319 -12.26574 -11.87147 -11.65260 -11.52907 -11.39952 -11.30055 -11.18967 -10.93332 -10.74607 -10.70234 -10.64191 -10.49670 -10.27422 -10.14456 -10.05154 -9.98808 -9.75230 -9.71972 -8.67341 -8.13980 -7.55440 -6.84046 -5.75003 -3.00363 3.42917 3.50411 3.51767 4.02264 4.32438 4.58277 4.86106 4.99044 5.05245 5.24999 5.34840 5.43747 5.47745 5.59589 5.65716 5.72608 5.74260 5.76857 5.80900 5.88476 5.91951 6.01883 6.04646 6.12375 6.17913 6.25225 6.26064 6.29676 6.34556 6.36668 6.42493 6.46241 6.51229 6.59624 6.60932 6.67536 6.80111 6.94407 7.12297 7.23895 7.57371 7.83550 8.31834 8.66443 9.22231 9.78070 9.95372 10.34010 11.34773 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014113 B = 0.006400 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.456335 B = 4373.801139 C = 5292.186619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.153 3.847 4 N -0.576 5.576 5 C -0.242 4.242 6 H 0.077 0.923 7 C -0.003 4.003 8 N -0.897 5.897 9 Si 0.900 3.100 10 H -0.290 1.290 11 H -0.295 1.295 12 H -0.282 1.282 13 C 0.166 3.834 14 C 0.537 3.463 15 O -0.533 6.533 16 N -0.624 5.624 17 C 0.127 3.873 18 C -0.112 4.112 19 H 0.075 0.925 20 C -0.144 4.144 21 C -0.104 4.104 22 C -0.106 4.106 23 H 0.070 0.930 24 C -0.140 4.140 25 C 0.122 3.878 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.034 0.966 33 H 0.251 0.749 34 H 0.032 0.968 35 H 0.101 0.899 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.051 0.949 44 H 0.045 0.955 45 H 0.060 0.940 46 H 0.083 0.917 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.946 -1.141 -13.104 13.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.182 4.182 3 C 0.026 3.974 4 N -0.295 5.295 5 C -0.371 4.371 6 H 0.095 0.905 7 C -0.200 4.200 8 N -0.543 5.543 9 Si 0.730 3.270 10 H -0.217 1.217 11 H -0.222 1.222 12 H -0.207 1.207 13 C 0.036 3.964 14 C 0.326 3.674 15 O -0.406 6.406 16 N -0.362 5.362 17 C 0.002 3.998 18 C -0.131 4.131 19 H 0.093 0.907 20 C -0.202 4.202 21 C -0.142 4.142 22 C -0.126 4.126 23 H 0.088 0.912 24 C -0.197 4.197 25 C -0.002 4.002 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.119 0.881 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.079 0.921 46 H 0.102 0.898 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.030 -0.616 -12.615 12.988 hybrid contribution 0.926 -0.164 0.644 1.140 sum -2.103 -0.780 -11.971 12.180 Atomic orbital electron populations 1.21722 0.97278 1.00396 1.01081 1.22118 0.93715 1.00736 1.01639 1.20755 0.84423 0.93041 0.99154 1.43930 0.99670 1.83823 1.02109 1.19240 0.89679 1.41745 0.86391 0.90541 1.24674 0.97327 0.99852 0.98162 1.69920 1.09345 1.40135 1.34896 0.86293 0.79936 0.78827 0.81899 1.21734 1.22178 1.20719 1.20712 0.97755 0.91500 0.86439 1.22015 0.74495 0.93711 0.77227 1.90486 1.51857 1.49059 1.49231 1.48232 1.59458 1.04606 1.23878 1.21559 0.98229 0.91462 0.88529 1.21688 1.01000 0.94883 0.95549 0.90663 1.21767 1.00842 0.98846 0.98724 1.21552 1.00157 0.94335 0.98120 1.21505 0.96154 0.98536 0.96395 0.91212 1.21773 0.95095 1.02525 1.00347 1.21285 0.99140 0.85667 0.94063 0.93451 0.93725 0.93216 0.93062 0.92085 0.93733 0.94786 0.93812 0.94975 0.88100 0.92710 0.90206 0.92730 0.92519 0.92938 0.92521 0.92184 0.93002 0.93587 0.92131 0.89843 0.93336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.15 0.37 -1.75 16 2 C -0.14 -2.54 6.25 -26.73 -0.17 -2.71 16 3 C 0.15 3.29 5.67 -4.04 -0.02 3.27 16 4 N -0.58 -14.51 2.02 -174.61 -0.35 -14.87 16 5 C -0.24 -6.69 9.70 -15.06 -0.15 -6.83 16 6 H 0.08 2.10 7.94 -52.49 -0.42 1.69 16 7 C 0.00 -0.09 4.90 -17.43 -0.09 -0.17 16 8 N -0.90 -25.58 8.96 55.49 0.50 -25.08 16 9 Si 0.90 22.07 29.62 -169.99 -5.04 17.03 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.17 3.90 3.77 -5.19 -0.02 3.88 16 14 C 0.54 12.85 5.76 -10.99 -0.06 12.79 16 15 O -0.53 -15.15 15.57 5.55 0.09 -15.06 16 16 N -0.62 -12.11 2.40 -172.48 -0.41 -12.53 16 17 C 0.13 1.99 5.65 -3.49 -0.02 1.97 16 18 C -0.11 -1.40 2.54 -90.28 -0.23 -1.63 16 19 H 0.08 0.99 6.33 -51.93 -0.33 0.66 16 20 C -0.14 -1.46 9.20 37.16 0.34 -1.12 16 21 C -0.10 -1.24 4.71 -26.69 -0.13 -1.37 16 22 C -0.11 -1.45 3.21 -90.48 -0.29 -1.74 16 23 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 24 C -0.14 -1.94 8.71 37.16 0.32 -1.62 16 25 C 0.12 2.16 5.83 -3.69 -0.02 2.14 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.04 0.99 8.06 -51.93 -0.42 0.57 16 32 H 0.03 0.71 8.06 -51.93 -0.42 0.29 16 33 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.03 0.66 7.63 -51.93 -0.40 0.27 16 35 H 0.10 2.54 6.09 -51.93 -0.32 2.22 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.08 1.27 5.93 -51.93 -0.31 0.96 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.93 5.97 -51.93 -0.31 0.62 16 46 H 0.08 1.69 7.01 -51.93 -0.36 1.33 16 47 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 359.16 15.07 5.41 5.41 Total: -1.00 -31.62 359.16 -8.72 -40.34 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -8.75 Total: -0.36 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -0.16 Total: 5.11 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.27 Total: -52.47 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.09 Total: -15.06 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.04 Total: 17.03 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.62 -8.72 -40.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250201584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.248 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds